Wall clock time and date at job start Mon Mar 30 2020 05:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31012 * 1 3 3 Si 1.86800 * 120.00070 * 2 1 4 4 H 1.48500 * 109.47213 * 270.00149 * 3 2 1 5 5 H 1.48504 * 109.47159 * 29.99808 * 3 2 1 6 6 H 1.48501 * 109.47579 * 150.00259 * 3 2 1 7 7 C 1.39585 * 120.00158 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99624 * 359.97438 * 7 2 1 9 9 N 1.36124 * 119.99962 * 180.02562 * 7 2 1 10 10 C 1.34777 * 119.99618 * 180.02562 * 9 7 2 11 11 O 1.21503 * 120.00322 * 359.97438 * 10 9 7 12 12 C 1.48826 * 119.99709 * 179.72255 * 10 9 7 13 13 O 1.21443 * 120.00345 * 0.27351 * 12 10 9 14 14 N 1.34777 * 120.00107 * 180.27489 * 12 10 9 15 15 C 1.46499 * 120.00065 * 179.97438 * 14 12 10 16 16 H 1.09004 * 109.23737 * 347.01178 * 15 14 12 17 17 C 1.49581 * 109.24421 * 227.65681 * 15 14 12 18 18 C 1.31741 * 116.78586 * 259.33533 * 17 15 14 19 19 S 1.77526 * 106.95090 * 359.75754 * 18 17 15 20 20 N 1.48312 * 109.24286 * 106.45192 * 15 14 12 21 21 H 0.96995 * 120.00104 * 0.02562 * 1 2 3 22 22 H 0.97000 * 119.99899 * 359.97438 * 9 7 2 23 23 H 0.97000 * 120.00140 * 359.97438 * 14 12 10 24 24 H 1.07995 * 121.61054 * 79.31249 * 17 15 14 25 25 H 1.07998 * 126.52322 * 179.77977 * 18 17 15 26 26 H 1.00903 * 111.00056 * 210.99711 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6177 0.0000 4 1 2.4916 2.0464 -1.4001 5 1 1.4416 2.6527 0.7000 6 1 3.5418 1.4402 0.7000 7 6 2.0081 -1.2088 0.0005 8 1 1.4680 -2.1441 0.0014 9 7 3.3693 -1.2088 0.0011 10 6 4.0432 -2.3760 0.0011 11 8 3.4357 -3.4283 0.0011 12 6 5.5314 -2.3760 -0.0046 13 8 6.1387 -1.3243 -0.0042 14 7 6.2053 -3.5432 -0.0102 15 6 7.6703 -3.5431 -0.0163 16 1 8.0285 -2.5397 -0.2468 17 6 8.1589 -4.4919 -1.0645 18 6 8.5619 -5.6763 -0.6518 19 16 8.3676 -5.7033 1.1126 20 7 8.1647 -3.9429 1.3236 21 1 -0.4850 0.8400 -0.0004 22 1 3.8543 -0.3687 0.0007 23 1 5.7204 -4.3832 -0.0102 24 1 8.1801 -4.2192 -2.1092 25 1 8.9389 -6.4781 -1.2693 26 1 9.0471 -3.4994 1.5305 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725635947.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:10 Heat of formation + Delta-G solvation = -19.688903 kcal Electronic energy + Delta-G solvation = -14911.398523 eV Core-core repulsion = 12117.839688 eV Total energy + Delta-G solvation = -2793.558835 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 243.046 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.96006 -38.05022 -36.86282 -34.43737 -32.81903 -31.88581 -31.40751 -26.50701 -24.99752 -22.48136 -20.31804 -19.85960 -19.14135 -18.05032 -17.02067 -16.60765 -15.97062 -15.45064 -14.95198 -14.68501 -14.41750 -13.56012 -13.08218 -12.90155 -12.66406 -12.57784 -12.44821 -11.55892 -11.31004 -10.79875 -10.65914 -10.57873 -10.16267 -10.13406 -9.80130 -9.28726 -8.51671 -8.45046 -7.77418 -6.61861 -4.03059 1.18418 1.45977 1.69516 2.24267 3.01503 3.05358 3.08018 3.20383 3.92841 3.99147 4.08623 4.59649 4.67963 5.02923 5.09553 5.27792 5.56278 5.63034 5.73677 6.09573 6.49803 7.22075 7.53452 7.87622 8.15632 8.42801 8.69732 9.15396 9.57557 10.48000 Molecular weight = 243.05amu Principal moments of inertia in cm(-1) A = 0.052656 B = 0.005321 C = 0.005078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.624257 B = 5261.356007 C = 5512.421906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.053 3.947 3 Si 0.876 3.124 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.259 1.259 7 C -0.308 4.308 8 H 0.128 0.872 9 N -0.524 5.524 10 C 0.405 3.595 11 O -0.575 6.575 12 C 0.524 3.476 13 O -0.549 6.549 14 N -0.684 5.684 15 C 0.301 3.699 16 H 0.130 0.870 17 C -0.207 4.207 18 C -0.138 4.138 19 S 0.012 5.988 20 N -0.582 5.582 21 H 0.282 0.718 22 H 0.384 0.616 23 H 0.416 0.584 24 H 0.154 0.846 25 H 0.175 0.825 26 H 0.366 0.634 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.193 -5.947 -1.642 18.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.156 4.156 3 Si 0.701 3.299 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.184 1.184 7 C -0.437 4.437 8 H 0.146 0.854 9 N -0.161 5.161 10 C 0.189 3.811 11 O -0.461 6.461 12 C 0.309 3.691 13 O -0.426 6.426 14 N -0.339 5.339 15 C 0.104 3.896 16 H 0.147 0.853 17 C -0.241 4.241 18 C -0.271 4.271 19 S 0.139 5.861 20 N -0.306 5.306 21 H 0.093 0.907 22 H 0.218 0.782 23 H 0.254 0.746 24 H 0.172 0.828 25 H 0.192 0.808 26 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 16.336 -6.343 -0.249 17.526 hybrid contribution 1.204 1.708 -1.483 2.563 sum 17.540 -4.635 -1.732 18.225 Atomic orbital electron populations 1.69437 1.06128 1.28726 1.44085 1.25241 0.95557 0.98619 0.96153 0.86667 0.80451 0.83006 0.79777 1.18883 1.19477 1.18423 1.19584 0.79051 0.97157 1.47936 0.85397 1.41817 1.07593 1.06838 1.59870 1.18652 0.86002 0.85387 0.91042 1.90643 1.68473 1.30259 1.56686 1.20782 0.90074 0.83183 0.75054 1.90664 1.70752 1.31304 1.49895 1.45479 1.04193 1.10129 1.74050 1.20882 0.83564 1.01260 0.83855 0.85297 1.23801 1.02786 0.95682 1.01797 1.25969 1.01439 1.00022 0.99689 1.86977 1.89886 1.05501 1.03750 1.66684 1.33217 1.00882 1.29830 0.90705 0.78154 0.74650 0.82836 0.80775 0.81535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.44 13.94 55.53 0.77 -22.66 15 2 C 0.05 1.41 5.51 -17.40 -0.10 1.31 15 3 Si 0.88 19.19 27.74 -169.99 -4.72 14.48 15 4 H -0.26 -5.64 7.11 56.52 0.40 -5.24 15 5 H -0.27 -5.77 7.11 56.52 0.40 -5.36 15 6 H -0.26 -5.52 6.53 56.52 0.37 -5.15 15 7 C -0.31 -8.57 10.16 -15.14 -0.15 -8.72 15 8 H 0.13 3.97 7.37 -52.49 -0.39 3.58 15 9 N -0.52 -13.19 5.06 -11.59 -0.06 -13.25 15 10 C 0.40 9.82 7.82 -11.88 -0.09 9.73 15 11 O -0.57 -15.30 16.03 5.36 0.09 -15.21 15 12 C 0.52 10.74 7.87 -11.88 -0.09 10.64 15 13 O -0.55 -11.68 15.84 5.42 0.09 -11.59 15 14 N -0.68 -11.41 5.12 -58.36 -0.30 -11.71 15 15 C 0.30 3.93 3.68 -127.33 -0.47 3.46 15 16 H 0.13 1.70 6.99 -51.93 -0.36 1.34 15 17 C -0.21 -2.10 9.96 -36.73 -0.37 -2.46 15 18 C -0.14 -1.25 11.42 28.85 0.33 -0.92 15 19 S 0.01 0.13 23.85 -107.50 -2.56 -2.43 15 20 N -0.58 -7.24 8.18 -7.97 -0.07 -7.31 15 21 H 0.28 7.11 8.30 -40.82 -0.34 6.77 15 22 H 0.38 9.03 5.22 -40.82 -0.21 8.82 15 23 H 0.42 7.01 8.27 -40.82 -0.34 6.68 15 24 H 0.15 1.30 8.06 -52.49 -0.42 0.88 15 25 H 0.17 1.07 8.06 -52.49 -0.42 0.65 15 26 H 0.37 3.57 9.00 -36.91 -0.33 3.24 15 LS Contribution 254.17 15.07 3.83 3.83 Total: -1.00 -31.11 254.17 -5.51 -36.62 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -1.64 Total: 16.21 kcal Atomic # 6 Polarization: 13.97 SS G_CDS: -0.94 Total: 13.03 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: 0.35 Total: -54.93 kcal Atomic # 8 Polarization: -26.98 SS G_CDS: 0.17 Total: -26.80 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -4.72 Total: 14.48 kcal Atomic # 16 Polarization: 0.13 SS G_CDS: -2.56 Total: -2.43 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -31.11 -5.51 -36.62 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725635947.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.929 kcal (2) G-P(sol) polarization free energy of solvation -31.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds