Wall clock time and date at job start Mon Mar 30 2020 05:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31012 * 1 3 3 Si 1.86800 * 120.00070 * 2 1 4 4 H 1.48500 * 109.47213 * 270.00149 * 3 2 1 5 5 H 1.48504 * 109.47159 * 29.99808 * 3 2 1 6 6 H 1.48501 * 109.47579 * 150.00259 * 3 2 1 7 7 C 1.39585 * 120.00158 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99624 * 359.97438 * 7 2 1 9 9 N 1.36124 * 119.99962 * 180.02562 * 7 2 1 10 10 C 1.34777 * 119.99618 * 180.02562 * 9 7 2 11 11 O 1.21503 * 120.00322 * 359.97438 * 10 9 7 12 12 C 1.48826 * 119.99709 * 179.72255 * 10 9 7 13 13 O 1.21443 * 120.00345 * 0.27351 * 12 10 9 14 14 N 1.34777 * 120.00107 * 180.27489 * 12 10 9 15 15 C 1.46499 * 120.00065 * 179.97438 * 14 12 10 16 16 H 1.09004 * 109.23737 * 347.01178 * 15 14 12 17 17 C 1.49581 * 109.24421 * 227.65681 * 15 14 12 18 18 C 1.31741 * 116.78586 * 259.33533 * 17 15 14 19 19 S 1.77526 * 106.95090 * 359.75754 * 18 17 15 20 20 N 1.48312 * 109.24286 * 106.45192 * 15 14 12 21 21 H 0.96995 * 120.00104 * 0.02562 * 1 2 3 22 22 H 0.97000 * 119.99899 * 359.97438 * 9 7 2 23 23 H 0.97000 * 120.00140 * 359.97438 * 14 12 10 24 24 H 1.07995 * 121.61054 * 79.31249 * 17 15 14 25 25 H 1.07998 * 126.52322 * 179.77977 * 18 17 15 26 26 H 1.00903 * 111.00056 * 210.99711 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6177 0.0000 4 1 2.4916 2.0464 -1.4001 5 1 1.4416 2.6527 0.7000 6 1 3.5418 1.4402 0.7000 7 6 2.0081 -1.2088 0.0005 8 1 1.4680 -2.1441 0.0014 9 7 3.3693 -1.2088 0.0011 10 6 4.0432 -2.3760 0.0011 11 8 3.4357 -3.4283 0.0011 12 6 5.5314 -2.3760 -0.0046 13 8 6.1387 -1.3243 -0.0042 14 7 6.2053 -3.5432 -0.0102 15 6 7.6703 -3.5431 -0.0163 16 1 8.0285 -2.5397 -0.2468 17 6 8.1589 -4.4919 -1.0645 18 6 8.5619 -5.6763 -0.6518 19 16 8.3676 -5.7033 1.1126 20 7 8.1647 -3.9429 1.3236 21 1 -0.4850 0.8400 -0.0004 22 1 3.8543 -0.3687 0.0007 23 1 5.7204 -4.3832 -0.0102 24 1 8.1801 -4.2192 -2.1092 25 1 8.9389 -6.4781 -1.2693 26 1 9.0471 -3.4994 1.5305 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725635947.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:10 Heat of formation + Delta-G solvation = -46.031512 kcal Electronic energy + Delta-G solvation = -14912.540824 eV Core-core repulsion = 12117.839688 eV Total energy + Delta-G solvation = -2794.701136 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 243.046 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.58834 -39.66435 -38.28636 -36.42065 -34.30829 -33.79963 -32.33156 -28.30111 -26.41302 -24.04229 -21.52698 -21.28181 -21.03860 -19.29255 -18.56036 -17.94686 -17.31625 -17.03488 -16.57712 -16.35534 -15.58306 -15.27660 -14.76013 -14.67239 -14.42946 -13.76496 -13.51228 -13.09897 -12.72942 -12.57272 -12.28664 -11.99015 -11.72490 -11.50801 -11.03376 -10.69482 -10.49181 -10.41009 -8.66972 -8.63894 -6.18149 0.28134 0.39382 0.66254 0.95662 1.28691 1.32986 1.39053 1.74735 2.09510 2.24220 2.96846 3.04370 3.11086 3.68341 3.80036 4.07839 4.57274 4.83095 4.87839 5.05821 5.24326 5.39526 5.71664 5.99174 6.30672 6.54497 6.79303 7.11001 7.59275 8.50505 Molecular weight = 243.05amu Principal moments of inertia in cm(-1) A = 0.052656 B = 0.005321 C = 0.005078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.624257 B = 5261.356007 C = 5512.421906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.011 3.989 3 Si 0.950 3.050 4 H -0.250 1.250 5 H -0.257 1.257 6 H -0.248 1.248 7 C -0.340 4.340 8 H 0.078 0.922 9 N -0.528 5.528 10 C 0.405 3.595 11 O -0.602 6.602 12 C 0.536 3.464 13 O -0.554 6.554 14 N -0.671 5.671 15 C 0.298 3.702 16 H 0.129 0.871 17 C -0.217 4.217 18 C -0.113 4.113 19 S -0.006 6.006 20 N -0.599 5.599 21 H 0.291 0.709 22 H 0.394 0.606 23 H 0.416 0.584 24 H 0.175 0.825 25 H 0.210 0.790 26 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.831 -5.483 -2.214 20.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.194 4.194 3 Si 0.769 3.231 4 H -0.174 1.174 5 H -0.181 1.181 6 H -0.172 1.172 7 C -0.469 4.469 8 H 0.096 0.904 9 N -0.166 5.166 10 C 0.190 3.810 11 O -0.489 6.489 12 C 0.319 3.681 13 O -0.432 6.432 14 N -0.325 5.325 15 C 0.102 3.898 16 H 0.147 0.853 17 C -0.250 4.250 18 C -0.246 4.246 19 S 0.121 5.879 20 N -0.325 5.325 21 H 0.102 0.898 22 H 0.230 0.770 23 H 0.252 0.748 24 H 0.193 0.807 25 H 0.227 0.773 26 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 19.005 -5.902 -0.813 19.916 hybrid contribution 0.457 1.334 -1.278 1.903 sum 19.462 -4.568 -2.091 20.100 Atomic orbital electron populations 1.69544 1.07933 1.30468 1.44771 1.26104 0.96384 1.02274 0.94625 0.85572 0.79348 0.77487 0.80701 1.17361 1.18111 1.17201 1.19188 0.80358 0.96124 1.51256 0.90411 1.41675 1.06637 1.07605 1.60694 1.19508 0.88080 0.84679 0.88735 1.90620 1.69967 1.31339 1.57013 1.19901 0.88057 0.84359 0.75794 1.90666 1.70242 1.31673 1.50613 1.45498 1.06184 1.08629 1.72161 1.21177 0.80901 1.02568 0.85135 0.85304 1.23748 1.03855 0.95495 1.01863 1.26319 0.99887 1.00321 0.98039 1.87085 1.89957 1.04657 1.06211 1.66445 1.34592 1.01863 1.29628 0.89836 0.77012 0.74750 0.80741 0.77283 0.79776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.48 13.94 21.76 0.30 -50.18 15 2 C 0.01 0.62 5.51 85.14 0.47 1.09 15 3 Si 0.95 38.94 27.74 68.60 1.90 40.85 15 4 H -0.25 -9.67 7.11 99.48 0.71 -8.96 15 5 H -0.26 -9.98 7.11 99.48 0.71 -9.27 15 6 H -0.25 -9.63 6.53 99.48 0.65 -8.98 15 7 C -0.34 -19.66 10.16 84.35 0.86 -18.80 15 8 H 0.08 5.17 7.37 -2.91 -0.02 5.15 15 9 N -0.53 -26.84 5.06 -308.87 -1.56 -28.41 15 10 C 0.41 19.86 7.82 87.08 0.68 20.54 15 11 O -0.60 -32.92 16.03 -3.73 -0.06 -32.98 15 12 C 0.54 21.40 7.87 87.08 0.69 22.08 15 13 O -0.55 -22.57 15.84 -3.54 -0.06 -22.62 15 14 N -0.67 -21.43 5.12 -456.88 -2.34 -23.77 15 15 C 0.30 7.09 3.68 127.78 0.47 7.56 15 16 H 0.13 3.10 6.99 -2.39 -0.02 3.09 15 17 C -0.22 -3.67 9.96 24.62 0.25 -3.43 15 18 C -0.11 -1.63 11.42 67.10 0.77 -0.86 15 19 S -0.01 -0.13 23.85 -56.49 -1.35 -1.48 15 20 N -0.60 -13.75 8.18 -179.13 -1.47 -15.22 15 21 H 0.29 14.85 8.30 -92.71 -0.77 14.08 15 22 H 0.39 18.18 5.22 -92.71 -0.48 17.70 15 23 H 0.42 13.52 8.27 -92.71 -0.77 12.76 15 24 H 0.18 2.28 8.06 -2.91 -0.02 2.26 15 25 H 0.21 1.55 8.06 -2.91 -0.02 1.53 15 26 H 0.38 6.68 9.00 -91.21 -0.82 5.86 15 Total: -1.00 -69.11 254.17 -1.31 -70.42 By element: Atomic # 1 Polarization: 36.07 SS G_CDS: -0.86 Total: 35.20 kcal Atomic # 6 Polarization: 24.00 SS G_CDS: 4.17 Total: 28.18 kcal Atomic # 7 Polarization: -112.50 SS G_CDS: -5.06 Total: -117.57 kcal Atomic # 8 Polarization: -55.49 SS G_CDS: -0.12 Total: -55.60 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 1.90 Total: 40.85 kcal Atomic # 16 Polarization: -0.13 SS G_CDS: -1.35 Total: -1.48 kcal Total: -69.11 -1.31 -70.42 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725635947.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.387 kcal (2) G-P(sol) polarization free energy of solvation -69.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds