Wall clock time and date at job start Mon Mar 30 2020 05:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31053 * 1 3 3 Si 1.86794 * 119.99885 * 2 1 4 4 H 1.48506 * 109.47275 * 240.00266 * 3 2 1 5 5 H 1.48502 * 109.47530 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46938 * 120.00666 * 3 2 1 7 7 C 1.39531 * 119.99901 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00365 * 179.97438 * 7 2 1 9 9 N 1.36173 * 120.00176 * 359.97438 * 7 2 1 10 10 C 1.34775 * 120.00095 * 180.02562 * 9 7 2 11 11 O 1.21533 * 120.00079 * 359.97438 * 10 9 7 12 12 C 1.48569 * 120.00356 * 179.97438 * 10 9 7 13 13 O 1.21563 * 119.99527 * 0.02562 * 12 10 9 14 14 N 1.34775 * 120.00356 * 179.97438 * 12 10 9 15 15 C 1.39447 * 119.99896 * 175.51483 * 14 12 10 16 16 C 1.32598 * 121.70947 * 186.10549 * 15 14 12 17 17 S 1.77524 * 106.88103 * 180.21209 * 16 15 14 18 18 N 1.78444 * 96.63553 * 14.98699 * 17 16 15 19 19 C 1.48460 * 101.39284 * 335.42875 * 18 17 16 20 20 H 0.96994 * 120.00071 * 359.97438 * 1 2 3 21 21 H 0.97002 * 119.99736 * 359.97438 * 9 7 2 22 22 H 0.97000 * 119.99985 * 355.23552 * 14 12 10 23 23 H 1.08005 * 126.55912 * 0.23134 * 16 15 14 24 24 H 1.00900 * 111.00063 * 217.62799 * 18 17 16 25 25 H 1.08994 * 109.41543 * 267.40151 * 19 18 17 26 26 H 1.08996 * 109.14838 * 148.01959 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3105 0.0000 0.0000 3 14 2.2445 1.6177 0.0000 4 1 3.0982 1.6964 -1.2126 5 1 1.2795 2.7465 0.0006 6 1 3.0983 1.6963 1.2124 7 6 2.0082 -1.2084 -0.0005 8 1 3.0882 -1.2085 -0.0010 9 7 1.3273 -2.3877 -0.0005 10 6 2.0012 -3.5549 -0.0005 11 8 3.2165 -3.5549 -0.0010 12 6 1.2584 -4.8416 0.0000 13 8 0.0428 -4.8415 0.0000 14 7 1.9323 -6.0088 -0.0005 15 6 1.2383 -7.2145 0.0945 16 6 1.8695 -8.3742 0.2170 17 16 0.6217 -9.6343 0.2974 18 7 -0.7278 -8.6261 -0.2913 19 6 -0.2565 -7.2654 0.0698 20 1 -0.4850 0.8400 0.0004 21 1 0.3573 -2.3877 0.0002 22 1 2.8997 -6.0102 -0.0710 23 1 2.9383 -8.5235 0.2599 24 1 -1.5843 -8.8499 0.1928 25 1 -0.6411 -6.9980 1.0539 26 1 -0.6280 -6.5515 -0.6654 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725636100.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:04 Heat of formation + Delta-G solvation = -29.444816 kcal Electronic energy + Delta-G solvation = -14875.329879 eV Core-core repulsion = 12081.347996 eV Total energy + Delta-G solvation = -2793.981883 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 243.046 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.34277 -37.99370 -36.60270 -34.70742 -33.88261 -31.64122 -30.41942 -26.32119 -25.35833 -23.67718 -20.33734 -19.65219 -18.57904 -17.87216 -17.27144 -16.06784 -15.76007 -15.41898 -15.02660 -14.79901 -14.08519 -13.79397 -13.41689 -13.12923 -12.82931 -12.58454 -11.93238 -11.53664 -11.29994 -11.07167 -10.74250 -10.60412 -10.53537 -9.93950 -9.87957 -9.21455 -8.52602 -8.42630 -6.96160 -6.87167 -4.17740 1.39940 1.65286 1.93402 2.38031 3.04915 3.06657 3.08044 3.22654 3.86913 4.03179 4.12142 4.83138 4.88510 4.98926 5.17910 5.55514 5.67789 5.81896 5.97812 6.29093 6.51684 7.12079 7.33703 7.58917 8.01953 8.27167 8.74003 9.07754 9.62413 10.26623 Molecular weight = 243.05amu Principal moments of inertia in cm(-1) A = 0.069906 B = 0.004749 C = 0.004465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.443236 B = 5895.173489 C = 6269.570349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.033 3.967 3 Si 0.943 3.057 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.302 4.302 8 H 0.116 0.884 9 N -0.487 5.487 10 C 0.386 3.614 11 O -0.597 6.597 12 C 0.512 3.488 13 O -0.527 6.527 14 N -0.634 5.634 15 C 0.124 3.876 16 C -0.229 4.229 17 S -0.006 6.006 18 N -0.584 5.584 19 C 0.054 3.946 20 H 0.285 0.715 21 H 0.406 0.594 22 H 0.427 0.573 23 H 0.173 0.827 24 H 0.365 0.635 25 H 0.080 0.920 26 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.510 -10.595 1.233 10.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.176 4.176 3 Si 0.768 3.232 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.433 4.433 8 H 0.134 0.866 9 N -0.120 5.120 10 C 0.171 3.829 11 O -0.486 6.486 12 C 0.299 3.701 13 O -0.403 6.403 14 N -0.279 5.279 15 C 0.015 3.985 16 C -0.366 4.366 17 S 0.119 5.881 18 N -0.307 5.307 19 C -0.077 4.077 20 H 0.095 0.905 21 H 0.241 0.759 22 H 0.265 0.735 23 H 0.190 0.810 24 H 0.182 0.818 25 H 0.098 0.902 26 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.864 -11.420 0.728 11.476 hybrid contribution 0.251 2.014 0.643 2.129 sum -0.614 -9.406 1.371 9.525 Atomic orbital electron populations 1.69482 1.06622 1.29969 1.43681 1.25667 0.95700 1.00773 0.95419 0.85713 0.78916 0.78835 0.79732 1.19145 1.20405 1.19168 1.19935 0.94183 0.81674 1.47514 0.86649 1.41597 1.10587 1.04224 1.55641 1.18491 0.87769 0.83663 0.93020 1.90622 1.12502 1.86148 1.59306 1.21077 0.87641 0.85936 0.75494 1.90682 1.13974 1.87482 1.48145 1.43152 1.11879 1.02782 1.70067 1.20090 0.92992 0.85925 0.99464 1.24634 1.02375 0.93126 1.16455 1.85921 1.00157 1.18203 1.83859 1.67537 1.04760 1.03596 1.54839 1.21957 0.90537 0.90583 1.04588 0.90495 0.75889 0.73459 0.80995 0.81783 0.90226 0.84492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -21.80 13.03 55.53 0.72 -21.08 15 2 C 0.03 0.81 5.51 -17.40 -0.10 0.71 15 3 Si 0.94 19.04 29.56 -169.99 -5.02 14.02 15 4 H -0.27 -5.34 7.11 56.52 0.40 -4.93 15 5 H -0.28 -5.48 7.11 56.52 0.40 -5.08 15 6 H -0.27 -5.34 7.11 56.52 0.40 -4.94 15 7 C -0.30 -7.89 9.67 -15.14 -0.15 -8.03 15 8 H 0.12 3.07 7.15 -52.48 -0.38 2.69 15 9 N -0.49 -12.23 5.25 -11.66 -0.06 -12.29 15 10 C 0.39 9.13 7.81 -12.00 -0.09 9.04 15 11 O -0.60 -15.18 16.04 5.34 0.09 -15.09 15 12 C 0.51 10.31 7.82 -12.00 -0.09 10.22 15 13 O -0.53 -10.96 13.20 5.31 0.07 -10.89 15 14 N -0.63 -10.57 5.39 -9.13 -0.05 -10.62 15 15 C 0.12 1.88 6.71 -81.56 -0.55 1.34 15 16 C -0.23 -3.05 11.30 28.83 0.33 -2.72 15 17 S -0.01 -0.08 23.84 -107.50 -2.56 -2.64 15 18 N -0.58 -7.58 8.35 -10.90 -0.09 -7.67 15 19 C 0.05 0.80 5.29 -4.65 -0.02 0.77 15 20 H 0.28 6.69 8.30 -40.82 -0.34 6.35 15 21 H 0.41 10.17 7.34 -40.82 -0.30 9.87 15 22 H 0.43 6.53 8.20 -40.82 -0.33 6.19 15 23 H 0.17 1.88 8.06 -52.48 -0.42 1.45 15 24 H 0.37 3.75 9.00 -36.89 -0.33 3.42 15 25 H 0.08 1.15 8.09 -51.93 -0.42 0.73 15 26 H 0.14 2.29 6.21 -51.93 -0.32 1.97 15 LS Contribution 252.42 15.07 3.80 3.80 Total: -1.00 -27.98 252.42 -5.42 -33.40 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: -1.64 Total: 17.73 kcal Atomic # 6 Polarization: 12.00 SS G_CDS: -0.68 Total: 11.32 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: 0.52 Total: -51.65 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: 0.16 Total: -25.98 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.02 Total: 14.02 kcal Atomic # 16 Polarization: -0.08 SS G_CDS: -2.56 Total: -2.64 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -27.98 -5.42 -33.40 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725636100.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.958 kcal (2) G-P(sol) polarization free energy of solvation -27.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds