Wall clock time and date at job start Mon Mar 30 2020 05:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31053 * 1 3 3 Si 1.86794 * 119.99885 * 2 1 4 4 H 1.48506 * 109.47275 * 240.00266 * 3 2 1 5 5 H 1.48502 * 109.47530 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46938 * 120.00666 * 3 2 1 7 7 C 1.39531 * 119.99901 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00365 * 179.97438 * 7 2 1 9 9 N 1.36173 * 120.00176 * 359.97438 * 7 2 1 10 10 C 1.34775 * 120.00095 * 180.02562 * 9 7 2 11 11 O 1.21533 * 120.00079 * 359.97438 * 10 9 7 12 12 C 1.48569 * 120.00356 * 179.97438 * 10 9 7 13 13 O 1.21563 * 119.99527 * 0.02562 * 12 10 9 14 14 N 1.34775 * 120.00356 * 179.97438 * 12 10 9 15 15 C 1.39447 * 119.99896 * 175.51483 * 14 12 10 16 16 C 1.32598 * 121.70947 * 186.10549 * 15 14 12 17 17 S 1.77524 * 106.88103 * 180.21209 * 16 15 14 18 18 N 1.78444 * 96.63553 * 14.98699 * 17 16 15 19 19 C 1.48460 * 101.39284 * 335.42875 * 18 17 16 20 20 H 0.96994 * 120.00071 * 359.97438 * 1 2 3 21 21 H 0.97002 * 119.99736 * 359.97438 * 9 7 2 22 22 H 0.97000 * 119.99985 * 355.23552 * 14 12 10 23 23 H 1.08005 * 126.55912 * 0.23134 * 16 15 14 24 24 H 1.00900 * 111.00063 * 217.62799 * 18 17 16 25 25 H 1.08994 * 109.41543 * 267.40151 * 19 18 17 26 26 H 1.08996 * 109.14838 * 148.01959 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3105 0.0000 0.0000 3 14 2.2445 1.6177 0.0000 4 1 3.0982 1.6964 -1.2126 5 1 1.2795 2.7465 0.0006 6 1 3.0983 1.6963 1.2124 7 6 2.0082 -1.2084 -0.0005 8 1 3.0882 -1.2085 -0.0010 9 7 1.3273 -2.3877 -0.0005 10 6 2.0012 -3.5549 -0.0005 11 8 3.2165 -3.5549 -0.0010 12 6 1.2584 -4.8416 0.0000 13 8 0.0428 -4.8415 0.0000 14 7 1.9323 -6.0088 -0.0005 15 6 1.2383 -7.2145 0.0945 16 6 1.8695 -8.3742 0.2170 17 16 0.6217 -9.6343 0.2974 18 7 -0.7278 -8.6261 -0.2913 19 6 -0.2565 -7.2654 0.0698 20 1 -0.4850 0.8400 0.0004 21 1 0.3573 -2.3877 0.0002 22 1 2.8997 -6.0102 -0.0710 23 1 2.9383 -8.5235 0.2599 24 1 -1.5843 -8.8499 0.1928 25 1 -0.6411 -6.9980 1.0539 26 1 -0.6280 -6.5515 -0.6654 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725636100.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:03 Heat of formation + Delta-G solvation = -51.842758 kcal Electronic energy + Delta-G solvation = -14876.301127 eV Core-core repulsion = 12081.347996 eV Total energy + Delta-G solvation = -2794.953131 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 243.046 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.89221 -39.71670 -38.04708 -36.47507 -35.30818 -33.54177 -31.65982 -28.10053 -26.58202 -25.34274 -21.90500 -21.01966 -20.48206 -19.02099 -18.92457 -17.65412 -17.18680 -16.75032 -16.66983 -16.33645 -15.78873 -15.21974 -14.91416 -14.60011 -14.38123 -13.76342 -13.70455 -13.00287 -12.84237 -12.63564 -12.29965 -12.15308 -12.11982 -11.70002 -11.04615 -10.44568 -10.34910 -10.33538 -8.72508 -8.05997 -6.16211 0.00652 0.57261 0.75210 0.92811 1.41319 1.48860 1.53619 1.79541 2.25063 2.27472 2.79049 3.08981 3.33305 3.77616 3.89856 4.05847 4.42859 4.58936 4.77753 5.15260 5.20345 5.38340 5.60640 5.96931 6.24300 6.62013 6.85004 7.17460 7.70644 8.42354 Molecular weight = 243.05amu Principal moments of inertia in cm(-1) A = 0.069906 B = 0.004749 C = 0.004465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 400.443236 B = 5895.173489 C = 6269.570349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C -0.001 4.001 3 Si 1.010 2.990 4 H -0.263 1.263 5 H -0.267 1.267 6 H -0.263 1.263 7 C -0.342 4.342 8 H 0.102 0.898 9 N -0.500 5.500 10 C 0.386 3.614 11 O -0.615 6.615 12 C 0.521 3.479 13 O -0.536 6.536 14 N -0.618 5.618 15 C 0.085 3.915 16 C -0.199 4.199 17 S 0.017 5.983 18 N -0.588 5.588 19 C 0.059 3.941 20 H 0.291 0.709 21 H 0.403 0.597 22 H 0.433 0.567 23 H 0.200 0.800 24 H 0.380 0.620 25 H 0.078 0.922 26 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.041 -11.699 1.401 11.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.207 4.207 3 Si 0.830 3.170 4 H -0.188 1.188 5 H -0.191 1.191 6 H -0.188 1.188 7 C -0.472 4.472 8 H 0.120 0.880 9 N -0.133 5.133 10 C 0.171 3.829 11 O -0.506 6.506 12 C 0.306 3.694 13 O -0.413 6.413 14 N -0.263 5.263 15 C -0.022 4.022 16 C -0.335 4.335 17 S 0.143 5.857 18 N -0.313 5.313 19 C -0.071 4.071 20 H 0.101 0.899 21 H 0.238 0.762 22 H 0.273 0.727 23 H 0.217 0.783 24 H 0.199 0.801 25 H 0.096 0.904 26 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.413 -12.589 0.902 12.628 hybrid contribution 0.112 2.056 0.597 2.144 sum -0.301 -10.532 1.499 10.643 Atomic orbital electron populations 1.69541 1.07805 1.31176 1.44088 1.26551 0.96503 1.03524 0.94092 0.84749 0.77800 0.74687 0.79742 1.18787 1.19116 1.18770 1.20009 0.93892 0.82866 1.50455 0.87982 1.41653 1.10376 1.04676 1.56631 1.19115 0.87773 0.84685 0.91292 1.90589 1.13532 1.86923 1.59526 1.20323 0.87253 0.85759 0.76092 1.90695 1.14066 1.87646 1.48884 1.42851 1.12048 1.02304 1.69138 1.20168 0.93273 0.85639 1.03144 1.25166 1.04043 0.92558 1.11730 1.85953 0.99423 1.17109 1.83180 1.67454 1.05642 1.02838 1.55386 1.21750 0.90518 0.91050 1.03809 0.89854 0.76232 0.72672 0.78265 0.80073 0.90379 0.86727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -45.55 13.03 21.76 0.28 -45.27 15 2 C 0.00 -0.06 5.51 85.12 0.47 0.41 15 3 Si 1.01 38.85 29.56 68.60 2.03 40.88 15 4 H -0.26 -9.92 7.11 99.48 0.71 -9.22 15 5 H -0.27 -9.65 7.11 99.48 0.71 -8.94 15 6 H -0.26 -9.90 7.11 99.48 0.71 -9.19 15 7 C -0.34 -18.33 9.67 84.33 0.82 -17.51 15 8 H 0.10 5.60 7.15 -2.91 -0.02 5.58 15 9 N -0.50 -25.84 5.25 -309.10 -1.62 -27.47 15 10 C 0.39 18.60 7.81 87.00 0.68 19.28 15 11 O -0.62 -31.68 16.04 -3.82 -0.06 -31.75 15 12 C 0.52 21.02 7.82 87.00 0.68 21.70 15 13 O -0.54 -22.47 13.20 -3.91 -0.05 -22.52 15 14 N -0.62 -19.94 5.39 -301.07 -1.62 -21.56 15 15 C 0.09 2.44 6.71 39.84 0.27 2.71 15 16 C -0.20 -4.65 11.30 66.66 0.75 -3.90 15 17 S 0.02 0.39 23.84 -56.49 -1.35 -0.95 15 18 N -0.59 -14.08 8.35 -188.41 -1.57 -15.66 15 19 C 0.06 1.69 5.29 84.91 0.45 2.14 15 20 H 0.29 13.69 8.30 -92.71 -0.77 12.92 15 21 H 0.40 20.88 7.34 -92.71 -0.68 20.20 15 22 H 0.43 12.66 8.20 -92.71 -0.76 11.90 15 23 H 0.20 3.50 8.06 -2.91 -0.02 3.47 15 24 H 0.38 7.05 9.00 -91.22 -0.82 6.22 15 25 H 0.08 2.20 8.09 -2.39 -0.02 2.18 15 26 H 0.12 3.82 6.21 -2.39 -0.01 3.80 15 Total: -1.00 -59.71 252.42 -0.84 -60.55 By element: Atomic # 1 Polarization: 39.91 SS G_CDS: -0.99 Total: 38.92 kcal Atomic # 6 Polarization: 20.71 SS G_CDS: 4.11 Total: 24.82 kcal Atomic # 7 Polarization: -105.42 SS G_CDS: -4.53 Total: -109.95 kcal Atomic # 8 Polarization: -54.15 SS G_CDS: -0.11 Total: -54.27 kcal Atomic # 14 Polarization: 38.85 SS G_CDS: 2.03 Total: 40.88 kcal Atomic # 16 Polarization: 0.39 SS G_CDS: -1.35 Total: -0.95 kcal Total: -59.71 -0.84 -60.55 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725636100.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.703 kcal (2) G-P(sol) polarization free energy of solvation -59.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds