Wall clock time and date at job start Mon Mar 30 2020 05:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31937 * 119.01511 * 2 1 4 4 C 1.32158 * 121.07935 * 179.97438 * 3 2 1 5 5 C 1.38952 * 119.13041 * 0.02562 * 4 3 2 6 6 Cl 1.73600 * 120.88860 * 179.97438 * 5 4 3 7 7 C 1.39744 * 118.22047 * 359.97438 * 5 4 3 8 8 C 1.48153 * 120.56877 * 180.02562 * 7 5 4 9 9 O 1.21454 * 120.00521 * 359.97438 * 8 7 5 10 10 O 1.34662 * 119.99662 * 179.97438 * 8 7 5 11 11 C 1.34794 * 116.99820 * 179.97438 * 10 8 7 12 12 H 1.07995 * 120.00016 * 359.72945 * 11 10 8 13 13 C 1.38898 * 119.99969 * 179.97438 * 11 10 8 14 14 N 1.31357 * 119.99599 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99849 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47028 * 60.00910 * 15 13 11 17 17 H 1.48503 * 109.46851 * 180.02562 * 15 13 11 18 18 H 1.48492 * 109.47412 * 300.00519 * 15 13 11 19 19 N 1.31504 * 119.01166 * 180.25326 * 2 1 3 20 20 H 1.09004 * 109.46735 * 90.00301 * 1 2 3 21 21 H 1.09005 * 109.47359 * 210.00103 * 1 2 3 22 22 H 1.08999 * 109.47440 * 330.00346 * 1 2 3 23 23 H 1.07998 * 120.43398 * 179.97438 * 4 3 2 24 24 H 0.97005 * 119.99716 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1470 1.1538 0.0000 4 6 3.4677 1.2014 0.0005 5 6 4.1874 0.0128 0.0005 6 17 5.9234 0.0220 0.0005 7 6 3.4763 -1.1903 0.0005 8 6 4.1911 -2.4880 0.0011 9 8 5.4054 -2.5125 0.0011 10 8 3.4944 -3.6403 0.0016 11 6 4.2056 -4.7854 0.0016 12 1 5.2850 -4.7506 -0.0033 13 6 3.5502 -6.0100 0.0026 14 7 2.2373 -6.0522 0.0032 15 14 4.5358 -7.5968 0.0018 16 1 5.3929 -7.6477 1.2135 17 1 3.6076 -8.7560 0.0026 18 1 5.3903 -7.6482 -1.2115 19 7 2.1448 -1.1500 -0.0051 20 1 -0.3633 -0.0001 -1.0277 21 1 -0.3634 -0.8900 0.5139 22 1 -0.3634 0.8900 0.5138 23 1 3.9808 2.1517 0.0001 24 1 1.7796 -6.9074 0.0035 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745379676.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:11:22 Heat of formation + Delta-G solvation = -47.986994 kcal Electronic energy + Delta-G solvation = -14675.433146 eV Core-core repulsion = 11808.196323 eV Total energy + Delta-G solvation = -2867.236822 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 242.024 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.43609 -40.85584 -37.94348 -37.28926 -35.19314 -34.38699 -34.09647 -29.42854 -28.31560 -26.59898 -24.40365 -22.42667 -20.09440 -19.67029 -18.67264 -17.50239 -17.13715 -17.04725 -16.23514 -16.09081 -15.92616 -14.71659 -14.43278 -14.05438 -13.69467 -13.28127 -13.23567 -12.87839 -12.58430 -12.52287 -12.47167 -12.15478 -12.10725 -12.06623 -11.33136 -10.77350 -10.36736 -10.34466 -8.63092 -6.39029 -0.94613 -0.38338 0.78890 1.30613 1.32265 1.49743 1.60827 1.87402 2.31339 2.45515 2.74827 2.86080 2.94700 3.33142 3.62206 4.09256 4.55276 4.70314 4.78073 4.80691 5.06811 5.24001 5.49437 5.70209 6.42329 6.72484 6.78618 7.61067 8.56063 Molecular weight = 242.02amu Principal moments of inertia in cm(-1) A = 0.027427 B = 0.007787 C = 0.006085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.646355 B = 3594.741547 C = 4600.242815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.308 3.692 3 N -0.492 5.492 4 C 0.186 3.814 5 C -0.119 4.119 6 Cl -0.004 7.004 7 C 0.163 3.837 8 C 0.420 3.580 9 O -0.535 6.535 10 O -0.208 6.208 11 C -0.419 4.419 12 H 0.093 0.907 13 C -0.001 4.001 14 N -0.885 5.885 15 Si 1.024 2.976 16 H -0.258 1.258 17 H -0.258 1.258 18 H -0.259 1.259 19 N -0.498 5.498 20 H 0.106 0.894 21 H 0.085 0.915 22 H 0.116 0.884 23 H 0.233 0.767 24 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.811 12.414 -0.021 12.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.042 3.958 3 N -0.207 5.207 4 C 0.017 3.983 5 C -0.152 4.152 6 Cl 0.025 6.975 7 C 0.017 3.983 8 C 0.267 3.733 9 O -0.432 6.432 10 O -0.114 6.114 11 C -0.494 4.494 12 H 0.110 0.890 13 C -0.203 4.203 14 N -0.520 5.520 15 Si 0.842 3.158 16 H -0.183 1.183 17 H -0.181 1.181 18 H -0.183 1.183 19 N -0.216 5.216 20 H 0.124 0.876 21 H 0.104 0.896 22 H 0.134 0.866 23 H 0.249 0.751 24 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.546 12.180 -0.028 12.278 hybrid contribution 1.505 -0.855 -0.012 1.731 sum -0.041 11.325 -0.040 11.325 Atomic orbital electron populations 1.20792 0.81989 1.05592 1.05607 1.24245 1.00382 0.82155 0.89064 1.68451 1.09141 1.29425 1.13691 1.24081 0.88788 0.97448 0.87984 1.22953 0.89733 0.95509 1.06961 1.98409 1.04433 1.98571 1.96060 1.20591 0.90068 0.91574 0.96035 1.20819 0.85913 0.85166 0.81418 1.90686 1.13992 1.87503 1.51018 1.83980 1.40019 1.13537 1.73853 1.21713 0.92317 0.81131 1.54285 0.88951 1.26754 0.97320 1.02169 0.94102 1.70073 1.09112 1.28912 1.43927 0.84601 0.77441 0.73722 0.80059 1.18271 1.18144 1.18289 1.68570 1.07571 1.32264 1.13189 0.87575 0.89581 0.86579 0.75077 0.90667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.83 10.31 71.24 0.73 -1.10 14 2 C 0.31 9.80 7.64 138.79 1.06 10.86 14 3 N -0.49 -13.55 10.31 -187.79 -1.94 -15.49 14 4 C 0.19 4.75 11.14 84.82 0.94 5.70 14 5 C -0.12 -4.11 6.40 22.81 0.15 -3.96 14 6 Cl 0.00 -0.12 26.25 -2.72 -0.07 -0.20 14 7 C 0.16 7.18 6.79 41.93 0.28 7.47 14 8 C 0.42 22.71 7.90 70.46 0.56 23.27 14 9 O -0.54 -29.24 13.39 19.99 0.27 -28.98 14 10 O -0.21 -12.86 9.59 12.66 0.12 -12.74 14 11 C -0.42 -25.56 9.65 67.98 0.66 -24.90 14 12 H 0.09 5.58 6.86 -2.91 -0.02 5.56 14 13 C 0.00 -0.04 5.50 84.92 0.47 0.43 14 14 N -0.88 -52.28 13.67 21.65 0.30 -51.99 14 15 Si 1.02 42.62 29.55 68.60 2.03 44.65 14 16 H -0.26 -10.31 7.11 99.48 0.71 -9.60 14 17 H -0.26 -9.82 7.11 99.48 0.71 -9.12 14 18 H -0.26 -10.32 7.11 99.48 0.71 -9.61 14 19 N -0.50 -20.95 10.14 -177.12 -1.80 -22.74 14 20 H 0.11 2.03 8.14 -2.38 -0.02 2.01 14 21 H 0.09 2.06 8.14 -2.38 -0.02 2.04 14 22 H 0.12 1.90 8.14 -2.39 -0.02 1.88 14 23 H 0.23 3.42 8.06 -2.91 -0.02 3.39 14 24 H 0.28 15.06 8.31 -92.70 -0.77 14.29 14 Total: -1.00 -73.89 247.20 5.01 -68.88 By element: Atomic # 1 Polarization: -0.41 SS G_CDS: 1.25 Total: 0.84 kcal Atomic # 6 Polarization: 12.91 SS G_CDS: 4.85 Total: 17.76 kcal Atomic # 7 Polarization: -86.78 SS G_CDS: -3.44 Total: -90.22 kcal Atomic # 8 Polarization: -42.10 SS G_CDS: 0.39 Total: -41.72 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Atomic # 17 Polarization: -0.12 SS G_CDS: -0.07 Total: -0.20 kcal Total: -73.89 5.01 -68.88 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745379676.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.893 kcal (2) G-P(sol) polarization free energy of solvation -73.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds