Wall clock time and date at job start Mon Mar 30 2020 05:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 113.99562 * 2 1 4 4 C 1.50704 * 109.46510 * 180.02562 * 3 2 1 5 5 C 1.37398 * 123.36545 * 0.21203 * 4 3 2 6 6 C 1.33880 * 115.11371 * 180.29722 * 5 4 3 7 7 S 1.70618 * 110.97107 * 359.72804 * 6 5 4 8 8 C 1.36818 * 123.35598 * 180.02562 * 4 3 2 9 9 C 1.46337 * 125.46812 * 359.97438 * 8 4 3 10 10 O 1.21660 * 119.99766 * 359.45191 * 9 8 4 11 11 O 1.34904 * 120.00079 * 179.72164 * 9 8 4 12 12 C 1.34854 * 117.00005 * 179.72981 * 11 9 8 13 13 H 1.08004 * 120.00029 * 359.97438 * 12 11 9 14 14 C 1.38784 * 119.99905 * 180.02562 * 12 11 9 15 15 N 1.31432 * 120.00283 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99867 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.46805 * 60.00352 * 16 14 12 18 18 H 1.48501 * 109.46991 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47474 * 300.00249 * 16 14 12 20 20 H 1.09000 * 109.47255 * 300.00049 * 1 2 3 21 21 H 1.09000 * 109.47312 * 60.00550 * 1 2 3 22 22 H 1.09007 * 109.47080 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47482 * 59.99978 * 3 2 1 24 24 H 1.09003 * 109.46811 * 299.99429 * 3 2 1 25 25 H 1.07993 * 122.44121 * 0.02562 * 5 4 3 26 26 H 1.07999 * 124.51179 * 179.74714 * 6 5 4 27 27 H 0.96992 * 120.00737 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.1752 -0.0172 -0.0054 6 6 5.5111 0.0697 0.0011 7 16 6.0171 1.6991 0.0062 8 6 4.3527 2.2663 -0.0003 9 6 3.9335 3.6683 0.0002 10 8 2.7499 3.9493 -0.0097 11 8 4.8596 4.6492 0.0062 12 6 4.4063 5.9193 0.0007 13 1 3.3439 6.1134 -0.0086 14 6 5.3049 6.9769 0.0058 15 7 6.5978 6.7407 0.0166 16 14 4.6769 8.7362 -0.0026 17 1 3.8416 8.9693 1.2029 18 1 5.8291 9.6730 0.0054 19 1 3.8609 8.9647 -1.2220 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.6885 1.8464 0.8899 24 1 1.6885 1.8463 -0.8901 25 1 3.6561 -0.9642 -0.0094 26 1 6.1795 -0.7786 0.0026 27 1 7.2259 7.4798 0.0198 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000778928715.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:50 Heat of formation + Delta-G solvation = -91.297431 kcal Electronic energy + Delta-G solvation = -14834.975529 eV Core-core repulsion = 12071.444674 eV Total energy + Delta-G solvation = -2763.530854 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 242.045 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.24435 -38.18474 -36.65126 -35.07548 -32.24832 -30.17532 -28.08823 -25.92708 -24.94505 -23.15868 -21.32519 -18.18990 -18.04518 -17.61574 -16.13760 -15.71325 -15.52298 -15.15041 -14.59535 -14.40447 -14.07016 -13.78171 -13.00913 -12.49134 -12.13427 -11.92153 -11.75762 -11.65296 -11.25921 -11.13145 -10.51804 -10.51244 -10.43453 -9.91160 -9.63552 -9.15997 -8.67182 -8.36942 -8.02390 -6.51261 -4.13899 0.93747 1.96859 2.40961 2.77843 3.14344 3.14516 3.18562 3.86787 3.88845 3.94554 4.52666 5.07716 5.15761 5.37035 5.41652 5.58338 5.67524 5.76540 5.86482 5.88218 6.25688 6.40013 6.66254 6.85547 7.29799 7.34928 7.84293 8.59121 8.96196 9.72835 10.65874 Molecular weight = 242.04amu Principal moments of inertia in cm(-1) A = 0.028824 B = 0.006966 C = 0.005634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.169942 B = 4018.312779 C = 4969.017102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.395 6.395 3 C 0.130 3.870 4 C -0.056 4.056 5 C -0.125 4.125 6 C -0.269 4.269 7 S 0.247 5.753 8 C -0.210 4.210 9 C 0.459 3.541 10 O -0.546 6.546 11 O -0.203 6.203 12 C -0.374 4.374 13 H 0.099 0.901 14 C 0.042 3.958 15 N -0.856 5.856 16 Si 0.947 3.053 17 H -0.268 1.268 18 H -0.278 1.278 19 H -0.268 1.268 20 H 0.041 0.959 21 H 0.041 0.959 22 H 0.082 0.918 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.144 0.856 26 H 0.163 0.837 27 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.850 -10.854 -0.011 11.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.315 6.315 3 C 0.052 3.948 4 C -0.071 4.071 5 C -0.156 4.156 6 C -0.407 4.407 7 S 0.517 5.483 8 C -0.330 4.330 9 C 0.307 3.693 10 O -0.446 6.446 11 O -0.110 6.110 12 C -0.450 4.450 13 H 0.117 0.883 14 C -0.163 4.163 15 N -0.491 5.491 16 Si 0.771 3.229 17 H -0.193 1.193 18 H -0.202 1.202 19 H -0.193 1.193 20 H 0.059 0.941 21 H 0.059 0.941 22 H 0.101 0.899 23 H 0.090 0.910 24 H 0.090 0.910 25 H 0.162 0.838 26 H 0.181 0.819 27 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.325 -10.104 -0.004 10.368 hybrid contribution -1.796 0.231 -0.009 1.811 sum -4.121 -9.873 -0.013 10.699 Atomic orbital electron populations 1.22682 0.81097 1.02211 1.00227 1.87772 1.19542 1.28505 1.95634 1.20945 0.88180 0.83372 1.02258 1.19031 0.95214 0.91271 1.01540 1.19632 0.92736 0.98799 1.04444 1.25366 1.00102 1.03519 1.11677 1.83511 1.04344 0.94427 1.66047 1.23666 0.97555 0.95208 1.16543 1.19332 0.84914 0.84751 0.80303 1.90654 1.18194 1.83578 1.52154 1.83938 1.36573 1.15578 1.74906 1.21278 0.94459 0.77694 1.51563 0.88347 1.25401 0.94869 0.99997 0.96073 1.69976 1.01061 1.33191 1.44922 0.85684 0.78227 0.79480 0.79472 1.19341 1.20245 1.19337 0.94059 0.94050 0.89907 0.91010 0.90988 0.83801 0.81913 0.91724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.51 15 2 O -0.40 -6.10 9.62 -35.23 -0.34 -6.44 15 3 C 0.13 2.31 4.91 36.01 0.18 2.49 15 4 C -0.06 -1.06 5.90 -105.44 -0.62 -1.68 15 5 C -0.12 -2.00 9.48 -41.42 -0.39 -2.40 15 6 C -0.27 -3.96 10.92 29.20 0.32 -3.65 15 7 S 0.25 4.40 22.92 -107.50 -2.46 1.93 15 8 C -0.21 -4.51 6.45 -36.84 -0.24 -4.74 15 9 C 0.46 11.90 7.86 33.99 0.27 12.17 15 10 O -0.55 -14.70 14.13 -19.39 -0.27 -14.97 15 11 O -0.20 -5.86 9.60 -22.11 -0.21 -6.08 15 12 C -0.37 -10.95 9.65 30.93 0.30 -10.65 15 13 H 0.10 2.87 6.86 -52.48 -0.36 2.51 15 14 C 0.04 1.16 5.49 -17.52 -0.10 1.07 15 15 N -0.86 -24.59 13.67 55.49 0.76 -23.83 15 16 Si 0.95 20.90 29.55 -169.99 -5.02 15.88 15 17 H -0.27 -5.79 7.11 56.52 0.40 -5.39 15 18 H -0.28 -5.86 7.11 56.52 0.40 -5.46 15 19 H -0.27 -5.79 7.11 56.52 0.40 -5.39 15 20 H 0.04 0.45 8.14 -51.93 -0.42 0.03 15 21 H 0.04 0.45 8.14 -51.93 -0.42 0.03 15 22 H 0.08 0.76 8.14 -51.93 -0.42 0.33 15 23 H 0.07 1.33 7.85 -51.93 -0.41 0.92 15 24 H 0.07 1.33 7.83 -51.93 -0.41 0.93 15 25 H 0.14 2.06 7.46 -52.49 -0.39 1.67 15 26 H 0.16 1.83 8.06 -52.49 -0.42 1.41 15 27 H 0.27 7.17 8.31 -40.82 -0.34 6.83 15 LS Contribution 263.29 15.07 3.97 3.97 Total: -1.00 -31.86 263.29 -5.15 -37.01 By element: Atomic # 1 Polarization: 0.80 SS G_CDS: -2.39 Total: -1.59 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: 0.82 Total: -5.88 kcal Atomic # 7 Polarization: -24.59 SS G_CDS: 0.76 Total: -23.83 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -0.83 Total: -27.49 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: 4.40 SS G_CDS: -2.46 Total: 1.93 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -31.86 -5.15 -37.01 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778928715.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.287 kcal (2) G-P(sol) polarization free energy of solvation -31.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds