Wall clock time and date at job start Mon Mar 30 2020 05:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 113.99562 * 2 1 4 4 C 1.50704 * 109.46510 * 180.02562 * 3 2 1 5 5 C 1.37398 * 123.36545 * 0.21203 * 4 3 2 6 6 C 1.33880 * 115.11371 * 180.29722 * 5 4 3 7 7 S 1.70618 * 110.97107 * 359.72804 * 6 5 4 8 8 C 1.36818 * 123.35598 * 180.02562 * 4 3 2 9 9 C 1.46337 * 125.46812 * 359.97438 * 8 4 3 10 10 O 1.21660 * 119.99766 * 359.45191 * 9 8 4 11 11 O 1.34904 * 120.00079 * 179.72164 * 9 8 4 12 12 C 1.34854 * 117.00005 * 179.72981 * 11 9 8 13 13 H 1.08004 * 120.00029 * 359.97438 * 12 11 9 14 14 C 1.38784 * 119.99905 * 180.02562 * 12 11 9 15 15 N 1.31432 * 120.00283 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99867 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.46805 * 60.00352 * 16 14 12 18 18 H 1.48501 * 109.46991 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47474 * 300.00249 * 16 14 12 20 20 H 1.09000 * 109.47255 * 300.00049 * 1 2 3 21 21 H 1.09000 * 109.47312 * 60.00550 * 1 2 3 22 22 H 1.09007 * 109.47080 * 180.02562 * 1 2 3 23 23 H 1.08994 * 109.47482 * 59.99978 * 3 2 1 24 24 H 1.09003 * 109.46811 * 299.99429 * 3 2 1 25 25 H 1.07993 * 122.44121 * 0.02562 * 5 4 3 26 26 H 1.07999 * 124.51179 * 179.74714 * 6 5 4 27 27 H 0.96992 * 120.00737 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.1752 -0.0172 -0.0054 6 6 5.5111 0.0697 0.0011 7 16 6.0171 1.6991 0.0062 8 6 4.3527 2.2663 -0.0003 9 6 3.9335 3.6683 0.0002 10 8 2.7499 3.9493 -0.0097 11 8 4.8596 4.6492 0.0062 12 6 4.4063 5.9193 0.0007 13 1 3.3439 6.1134 -0.0086 14 6 5.3049 6.9769 0.0058 15 7 6.5978 6.7407 0.0166 16 14 4.6769 8.7362 -0.0026 17 1 3.8416 8.9693 1.2029 18 1 5.8291 9.6730 0.0054 19 1 3.8609 8.9647 -1.2220 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.6885 1.8464 0.8899 24 1 1.6885 1.8463 -0.8901 25 1 3.6561 -0.9642 -0.0094 26 1 6.1795 -0.7786 0.0026 27 1 7.2259 7.4798 0.0198 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000778928715.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:13:50 Heat of formation + Delta-G solvation = -112.454269 kcal Electronic energy + Delta-G solvation = -14835.892958 eV Core-core repulsion = 12071.444674 eV Total energy + Delta-G solvation = -2764.448283 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 242.045 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.13263 -39.69868 -37.97567 -37.09353 -34.35217 -31.61554 -29.53597 -27.57312 -26.47916 -24.58613 -23.06495 -20.07192 -19.78814 -19.31890 -17.64519 -17.21446 -17.07539 -16.48997 -16.48959 -16.22250 -15.74170 -14.98375 -14.38490 -14.35798 -13.67909 -13.39659 -13.24687 -13.12240 -13.05289 -12.42886 -12.28660 -12.17880 -12.11918 -11.75807 -11.16730 -10.84191 -10.73584 -9.85061 -9.44023 -8.58309 -6.35738 -0.56184 0.50979 1.04065 1.29295 1.33255 1.47323 1.49652 2.01800 2.07407 2.68651 2.72473 2.96655 3.85694 4.18158 4.32239 4.35202 4.48595 4.56161 4.58580 4.65878 4.82530 5.01759 5.08698 5.29830 5.35537 5.76572 6.10789 6.51586 6.85235 7.65028 8.61934 Molecular weight = 242.04amu Principal moments of inertia in cm(-1) A = 0.028824 B = 0.006966 C = 0.005634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.169942 B = 4018.312779 C = 4969.017102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.397 6.397 3 C 0.135 3.865 4 C -0.035 4.035 5 C -0.139 4.139 6 C -0.218 4.218 7 S 0.248 5.752 8 C -0.276 4.276 9 C 0.462 3.538 10 O -0.568 6.568 11 O -0.232 6.232 12 C -0.420 4.420 13 H 0.086 0.914 14 C -0.002 4.002 15 N -0.896 5.896 16 Si 1.020 2.980 17 H -0.261 1.261 18 H -0.258 1.258 19 H -0.261 1.261 20 H 0.045 0.955 21 H 0.045 0.955 22 H 0.114 0.886 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.172 0.828 26 H 0.213 0.787 27 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.821 -12.679 -0.015 13.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.317 6.317 3 C 0.057 3.943 4 C -0.052 4.052 5 C -0.169 4.169 6 C -0.355 4.355 7 S 0.517 5.483 8 C -0.394 4.394 9 C 0.311 3.689 10 O -0.468 6.468 11 O -0.140 6.140 12 C -0.496 4.496 13 H 0.103 0.897 14 C -0.203 4.203 15 N -0.533 5.533 16 Si 0.838 3.162 17 H -0.185 1.185 18 H -0.182 1.182 19 H -0.185 1.185 20 H 0.064 0.936 21 H 0.064 0.936 22 H 0.132 0.868 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.189 0.811 26 H 0.230 0.770 27 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.302 -11.953 -0.008 12.173 hybrid contribution -1.871 0.470 -0.007 1.929 sum -4.173 -11.483 -0.015 12.218 Atomic orbital electron populations 1.22987 0.79008 1.04429 1.00684 1.87748 1.21739 1.26551 1.95635 1.20726 0.88137 0.84513 1.00972 1.19430 0.95674 0.91753 0.98328 1.19842 0.93259 0.98480 1.05280 1.25924 1.00218 1.03001 1.06375 1.83510 1.02297 0.96586 1.65863 1.23467 1.00362 0.93232 1.22330 1.20150 0.84526 0.86208 0.77988 1.90600 1.19039 1.84543 1.52667 1.83957 1.37539 1.15962 1.76585 1.21483 0.94437 0.78768 1.54906 0.89675 1.26589 0.94912 1.04298 0.94481 1.70057 1.02321 1.35078 1.45805 0.84655 0.78326 0.73331 0.79847 1.18535 1.18190 1.18525 0.93643 0.93636 0.86775 0.92324 0.92314 0.81085 0.76989 0.90914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 11.01 113.37 1.25 1.77 15 2 O -0.40 -11.49 9.62 -148.98 -1.43 -12.93 15 3 C 0.13 4.78 4.91 71.24 0.35 5.13 15 4 C -0.04 -1.31 5.90 -20.39 -0.12 -1.43 15 5 C -0.14 -3.98 9.48 21.08 0.20 -3.78 15 6 C -0.22 -5.48 10.92 66.83 0.73 -4.75 15 7 S 0.25 8.55 22.92 -56.49 -1.29 7.25 15 8 C -0.28 -11.98 6.45 24.05 0.16 -11.83 15 9 C 0.46 25.16 7.86 69.93 0.55 25.70 15 10 O -0.57 -32.26 14.13 19.31 0.27 -31.99 15 11 O -0.23 -14.15 9.60 9.57 0.09 -14.06 15 12 C -0.42 -25.89 9.65 67.95 0.66 -25.23 15 13 H 0.09 5.27 6.86 -2.91 -0.02 5.25 15 14 C 0.00 -0.10 5.49 84.88 0.47 0.37 15 15 N -0.90 -52.88 13.67 21.63 0.30 -52.58 15 16 Si 1.02 43.35 29.55 68.60 2.03 45.38 15 17 H -0.26 -10.67 7.11 99.48 0.71 -9.97 15 18 H -0.26 -10.05 7.11 99.48 0.71 -9.34 15 19 H -0.26 -10.67 7.11 99.48 0.71 -9.96 15 20 H 0.04 0.93 8.14 -2.39 -0.02 0.91 15 21 H 0.04 0.93 8.14 -2.39 -0.02 0.91 15 22 H 0.11 1.72 8.14 -2.38 -0.02 1.70 15 23 H 0.06 2.23 7.85 -2.39 -0.02 2.21 15 24 H 0.06 2.23 7.83 -2.39 -0.02 2.22 15 25 H 0.17 4.07 7.46 -2.91 -0.02 4.05 15 26 H 0.21 3.32 8.06 -2.91 -0.02 3.30 15 27 H 0.28 15.00 8.31 -92.71 -0.77 14.23 15 Total: -1.00 -72.86 263.29 5.38 -67.48 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: 1.19 Total: 5.50 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: 4.23 Total: -14.05 kcal Atomic # 7 Polarization: -52.88 SS G_CDS: 0.30 Total: -52.58 kcal Atomic # 8 Polarization: -57.91 SS G_CDS: -1.07 Total: -58.97 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Atomic # 16 Polarization: 8.55 SS G_CDS: -1.29 Total: 7.25 kcal Total: -72.86 5.38 -67.48 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000778928715.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.977 kcal (2) G-P(sol) polarization free energy of solvation -72.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds