Wall clock time and date at job start Mon Mar 30 2020 03:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46901 * 109.47047 * 2 1 4 4 C 1.46900 * 110.99786 * 193.75363 * 3 2 1 5 5 C 1.53001 * 109.46906 * 78.32201 * 4 3 2 6 6 H 1.08993 * 109.47567 * 53.20189 * 5 4 3 7 7 O 1.42901 * 109.46915 * 293.20027 * 5 4 3 8 8 C 1.50701 * 109.46901 * 173.20620 * 5 4 3 9 9 H 1.07995 * 120.00370 * 359.97438 * 8 5 4 10 10 C 1.37882 * 119.99892 * 179.97438 * 8 5 4 11 11 N 1.31506 * 120.00076 * 179.97438 * 10 8 5 12 12 Si 1.86803 * 119.99826 * 359.97438 * 10 8 5 13 13 H 1.48496 * 109.47125 * 90.00314 * 12 10 8 14 14 H 1.48495 * 109.47122 * 210.00277 * 12 10 8 15 15 H 1.48499 * 109.46955 * 330.00270 * 12 10 8 16 16 C 1.46909 * 110.99819 * 69.80368 * 3 2 1 17 17 C 1.53776 * 113.61341 * 19.31217 * 16 3 2 18 18 C 1.53964 * 87.01776 * 220.04819 * 17 16 3 19 19 C 1.52997 * 113.53566 * 270.81294 * 18 17 16 20 20 C 1.52998 * 113.74123 * 139.94202 * 18 17 16 21 21 C 1.53781 * 113.61331 * 281.70046 * 16 3 2 22 22 H 1.08995 * 109.47415 * 285.21427 * 1 2 3 23 23 H 1.09005 * 109.46662 * 45.20956 * 1 2 3 24 24 H 1.08998 * 109.47383 * 165.20786 * 1 2 3 25 25 H 1.09000 * 109.47072 * 240.00157 * 2 1 3 26 26 H 1.08994 * 109.46813 * 119.99774 * 2 1 3 27 27 H 1.09000 * 109.47457 * 318.32021 * 4 3 2 28 28 H 1.09006 * 109.46855 * 198.31826 * 4 3 2 29 29 H 0.96701 * 114.00334 * 300.00612 * 7 5 4 30 30 H 0.96994 * 120.00204 * 179.97438 * 11 10 8 31 31 H 1.08997 * 112.84550 * 150.50664 * 16 3 2 32 32 H 1.09002 * 113.61843 * 334.56365 * 17 16 3 33 33 H 1.09000 * 113.61524 * 105.47478 * 17 16 3 34 34 H 1.08994 * 109.47258 * 157.49518 * 19 18 17 35 35 H 1.09003 * 109.47309 * 277.49260 * 19 18 17 36 36 H 1.09003 * 109.47280 * 37.49068 * 19 18 17 37 37 H 1.08994 * 109.47710 * 322.40244 * 20 18 17 38 38 H 1.09005 * 109.46851 * 82.40472 * 20 18 17 39 39 H 1.09001 * 109.46948 * 202.40067 * 20 18 17 40 40 H 1.08998 * 113.61672 * 254.53393 * 21 16 3 41 41 H 1.09002 * 113.60962 * 25.43534 * 21 16 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4511 1.4373 -0.3261 5 6 3.6363 1.2765 -1.8363 6 1 3.0195 2.0081 -2.3580 7 8 3.2449 -0.0413 -2.2265 8 6 5.0844 1.4960 -2.1909 9 1 5.8009 1.7275 -1.4168 10 6 5.4947 1.4013 -3.5039 11 7 6.7582 1.5934 -3.8135 12 14 4.2555 1.0002 -4.8429 13 1 3.6762 2.2599 -5.3747 14 1 4.9334 0.2651 -5.9407 15 1 3.1717 0.1568 -4.2778 16 6 1.7487 2.0392 1.2872 17 6 1.4786 1.0521 2.4350 18 6 0.3800 2.0233 2.9044 19 6 0.8845 3.0936 3.8743 20 6 -0.8895 1.3258 3.3969 21 6 0.2920 2.5053 1.4467 22 1 -0.3634 0.2697 0.9916 23 1 -0.3633 0.7241 -0.7294 24 1 -0.3634 -0.9936 -0.2624 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.9714 0.6314 0.1916 28 1 3.8610 2.3966 -0.0098 29 1 3.7529 -0.7450 -1.8001 30 1 7.0469 1.5264 -4.7371 31 1 2.4823 2.8064 1.5347 32 1 1.0952 0.0880 2.1007 33 1 2.3086 0.9590 3.1353 34 1 0.2092 3.9489 3.8548 35 1 0.9203 2.6820 4.8830 36 1 1.8833 3.4124 3.5763 37 1 -1.0879 0.4517 2.7768 38 1 -0.7540 1.0135 4.4325 39 1 -1.7312 2.0155 3.3327 40 1 0.1655 3.5836 1.3502 41 1 -0.4162 1.9393 0.8416 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930731248.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:58 Heat of formation + Delta-G solvation = -38.559088 kcal Electronic energy + Delta-G solvation = -18656.926835 eV Core-core repulsion = 15958.147961 eV Total energy + Delta-G solvation = -2698.778873 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.49109 -38.52205 -36.07978 -34.41708 -32.28019 -31.02736 -29.42499 -28.20448 -26.80014 -25.96871 -23.73003 -22.31195 -21.02956 -19.33855 -19.16562 -17.16712 -16.81495 -16.69842 -16.21239 -15.66704 -15.40041 -14.99220 -14.75237 -14.34169 -14.14745 -13.98336 -13.61738 -13.45607 -13.28752 -12.97296 -12.84029 -12.63669 -12.54602 -12.28504 -12.24207 -11.96558 -11.83775 -11.55679 -11.16252 -11.06758 -10.95355 -10.86162 -10.78445 -9.94181 -8.96021 -8.34867 -6.49258 1.41756 1.46148 1.76751 2.45309 3.03399 3.08464 3.61177 3.71660 3.92002 4.02195 4.06020 4.28184 4.36352 4.41658 4.44920 4.54780 4.69802 4.75885 4.80261 4.81568 4.87395 4.91509 4.97321 5.01246 5.02310 5.13748 5.18018 5.25139 5.30078 5.38316 5.42665 5.48878 5.55135 5.60752 5.72654 6.07928 6.36621 6.43641 6.63757 7.18959 7.34791 8.79481 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.041871 B = 0.005899 C = 0.005496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.553462 B = 4745.517377 C = 5093.552742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.030 3.970 3 N -0.531 5.531 4 C 0.056 3.944 5 C 0.213 3.787 6 H 0.049 0.951 7 O -0.573 6.573 8 C -0.566 4.566 9 H 0.034 0.966 10 C 0.029 3.971 11 N -0.941 5.941 12 Si 0.941 3.059 13 H -0.289 1.289 14 H -0.298 1.298 15 H -0.203 1.203 16 C 0.050 3.950 17 C -0.167 4.167 18 C -0.079 4.079 19 C -0.128 4.128 20 C -0.132 4.132 21 C -0.129 4.129 22 H 0.073 0.927 23 H 0.051 0.949 24 H 0.063 0.937 25 H 0.087 0.913 26 H 0.040 0.960 27 H 0.027 0.973 28 H 0.058 0.942 29 H 0.364 0.636 30 H 0.267 0.733 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.046 0.954 37 H 0.057 0.943 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.200 -2.136 14.047 21.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.097 4.097 3 N -0.254 5.254 4 C -0.072 4.072 5 C 0.155 3.845 6 H 0.067 0.933 7 O -0.380 6.380 8 C -0.604 4.604 9 H 0.053 0.947 10 C -0.170 4.170 11 N -0.581 5.581 12 Si 0.765 3.235 13 H -0.215 1.215 14 H -0.225 1.225 15 H -0.125 1.125 16 C -0.058 4.058 17 C -0.206 4.206 18 C -0.079 4.079 19 C -0.185 4.185 20 C -0.189 4.189 21 C -0.167 4.167 22 H 0.092 0.908 23 H 0.070 0.930 24 H 0.082 0.918 25 H 0.105 0.895 26 H 0.058 0.942 27 H 0.045 0.955 28 H 0.076 0.924 29 H 0.212 0.788 30 H 0.075 0.925 31 H 0.098 0.902 32 H 0.119 0.881 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -16.759 -1.543 13.200 21.389 hybrid contribution 1.436 -0.411 0.077 1.496 sum -15.322 -1.955 13.277 20.369 Atomic orbital electron populations 1.22108 0.94409 1.01713 1.02377 1.22586 0.96744 0.88587 1.01760 1.62080 1.15297 1.17861 1.30158 1.22464 0.87711 0.99821 0.97204 1.19485 0.91626 0.82129 0.91246 0.93289 1.86607 1.63418 1.16760 1.71204 1.21859 0.94897 1.49905 0.93704 0.94735 1.25847 0.96772 0.92834 1.01564 1.70081 1.17844 1.50360 1.19770 0.85959 0.81358 0.79168 0.76990 1.21532 1.22495 1.12453 1.23330 0.98005 0.97207 0.87298 1.23952 0.99238 0.99438 0.97952 1.21653 0.95767 0.96085 0.94438 1.21607 1.00607 0.97793 0.98484 1.21721 0.95989 1.00042 1.01190 1.23532 0.96227 1.00893 0.96023 0.90843 0.92952 0.91785 0.89476 0.94222 0.95475 0.92364 0.78845 0.92474 0.90186 0.88080 0.92504 0.91686 0.91650 0.93460 0.92382 0.92014 0.91893 0.92086 0.88384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 8.08 71.98 0.58 -2.99 16 2 C 0.03 0.88 5.00 86.30 0.43 1.32 16 3 N -0.53 -17.66 4.51 -867.88 -3.91 -21.57 16 4 C 0.06 2.23 4.75 86.30 0.41 2.64 16 5 C 0.21 9.92 2.53 29.85 0.08 10.00 16 6 H 0.05 2.44 7.57 -2.39 -0.02 2.42 16 7 O -0.57 -24.54 7.44 -148.98 -1.11 -25.65 16 8 C -0.57 -32.05 9.34 25.60 0.24 -31.81 16 9 H 0.03 2.15 7.99 -2.91 -0.02 2.13 16 10 C 0.03 1.72 5.47 84.66 0.46 2.18 16 11 N -0.94 -59.05 13.96 21.45 0.30 -58.75 16 12 Si 0.94 45.87 26.99 68.60 1.85 47.72 16 13 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 14 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 15 H -0.20 -9.36 5.30 99.48 0.53 -8.83 16 16 C 0.05 1.40 3.63 45.44 0.17 1.57 16 17 C -0.17 -3.84 5.64 31.18 0.18 -3.67 16 18 C -0.08 -1.52 1.33 -51.59 -0.07 -1.59 16 19 C -0.13 -2.26 9.07 71.98 0.65 -1.60 16 20 C -0.13 -2.07 9.07 71.98 0.65 -1.42 16 21 C -0.13 -3.00 6.44 31.12 0.20 -2.80 16 22 H 0.07 1.52 2.95 -2.39 -0.01 1.51 16 23 H 0.05 1.39 7.71 -2.38 -0.02 1.37 16 24 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.09 2.87 5.05 -2.39 -0.01 2.86 16 26 H 0.04 1.09 5.81 -2.39 -0.01 1.07 16 27 H 0.03 1.06 7.96 -2.39 -0.02 1.04 16 28 H 0.06 2.40 7.54 -2.38 -0.02 2.38 16 29 H 0.36 13.85 8.89 -74.06 -0.66 13.19 16 30 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 31 H 0.08 2.38 7.06 -2.39 -0.02 2.36 16 32 H 0.10 2.28 4.02 -2.39 -0.01 2.27 16 33 H 0.06 1.33 8.10 -2.39 -0.02 1.31 16 34 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.05 0.92 7.34 -2.39 -0.02 0.91 16 37 H 0.06 0.90 6.37 -2.39 -0.02 0.89 16 38 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 39 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.06 1.42 8.10 -2.39 -0.02 1.40 16 41 H 0.10 2.29 4.61 -2.39 -0.01 2.28 16 Total: -1.00 -64.26 298.84 1.29 -62.98 By element: Atomic # 1 Polarization: 23.28 SS G_CDS: 0.18 Total: 23.46 kcal Atomic # 6 Polarization: -32.17 SS G_CDS: 3.98 Total: -28.19 kcal Atomic # 7 Polarization: -76.71 SS G_CDS: -3.61 Total: -80.32 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: -1.11 Total: -25.65 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 1.85 Total: 47.72 kcal Total: -64.26 1.29 -62.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930731248.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.418 kcal (2) G-P(sol) polarization free energy of solvation -64.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds