Wall clock time and date at job start Mon Mar 30 2020 05:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00155 * 2 1 4 4 H 1.48498 * 109.47123 * 270.00356 * 3 2 1 5 5 H 1.48506 * 109.46940 * 30.00478 * 3 2 1 6 6 H 1.48497 * 109.47329 * 150.00191 * 3 2 1 7 7 C 1.37875 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 179.97438 * 7 2 1 10 10 C 1.50706 * 109.47294 * 180.02562 * 9 7 2 11 11 N 1.31791 * 119.11016 * 269.73496 * 10 9 7 12 12 C 1.32325 * 120.82368 * 179.75826 * 11 10 9 13 13 C 1.38682 * 119.09382 * 0.50547 * 12 11 10 14 14 Br 1.89102 * 120.81229 * 179.73007 * 13 12 11 15 15 C 1.38687 * 118.38021 * 359.74588 * 13 12 11 16 16 N 1.31799 * 119.10817 * 90.00284 * 10 9 7 17 17 H 0.97006 * 119.99727 * 359.97438 * 1 2 3 18 18 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 19 19 H 1.09000 * 109.47722 * 300.00831 * 9 7 2 20 20 H 1.08005 * 120.45352 * 180.25063 * 12 11 10 21 21 H 1.08001 * 120.45489 * 179.97438 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 6 4.0138 -2.6149 -0.0023 11 7 4.2330 -3.2184 1.1487 12 6 4.6696 -4.4670 1.1873 13 6 4.9060 -5.1358 -0.0044 14 35 5.5375 -6.9183 -0.0060 15 6 4.6683 -4.4654 -1.1950 16 7 4.2272 -3.2186 -1.1543 17 1 -0.4850 0.8401 0.0004 18 1 3.8751 -0.6805 0.8889 19 1 3.8746 -0.6799 -0.8910 20 1 4.8434 -4.9571 2.1339 21 1 4.8415 -4.9541 -2.1424 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001525640938.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:03 Heat of formation + Delta-G solvation = 24.623446 kcal Electronic energy + Delta-G solvation = -9857.150537 eV Core-core repulsion = 7778.634654 eV Total energy + Delta-G solvation = -2078.515883 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 241.975 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.08871 -35.74964 -34.87072 -34.25610 -32.13710 -29.76290 -25.77037 -25.70426 -22.99531 -19.11331 -18.84378 -17.97126 -16.44824 -16.09144 -15.77467 -14.92335 -14.78555 -14.13592 -13.76494 -13.07603 -12.53850 -12.41258 -12.04531 -11.85595 -11.79647 -11.65773 -11.63717 -10.81788 -10.28249 -10.05469 -8.33541 -6.41314 -0.38471 0.02315 0.33712 1.39932 1.42165 1.53690 2.34984 2.59700 2.97761 3.00116 3.18168 3.42745 3.76176 4.22770 4.50458 4.85381 5.09476 5.19001 5.44170 5.85204 6.12818 6.58928 7.04964 7.20591 8.83033 Molecular weight = 241.97amu Principal moments of inertia in cm(-1) A = 0.085512 B = 0.005688 C = 0.005636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 327.359427 B = 4921.621144 C = 4966.829018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.013 3.987 3 Si 0.956 3.044 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.242 1.242 7 C -0.521 4.521 8 H 0.020 0.980 9 C 0.048 3.952 10 C 0.355 3.645 11 N -0.534 5.534 12 C 0.176 3.824 13 C -0.223 4.223 14 Br 0.005 6.995 15 C 0.177 3.823 16 N -0.534 5.534 17 H 0.271 0.729 18 H 0.055 0.945 19 H 0.053 0.947 20 H 0.204 0.796 21 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.749 -13.433 -0.005 19.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.185 4.185 3 Si 0.777 3.223 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.166 1.166 7 C -0.559 4.559 8 H 0.038 0.962 9 C 0.009 3.991 10 C 0.090 3.910 11 N -0.248 5.248 12 C 0.009 3.991 13 C -0.307 4.307 14 Br 0.089 6.911 15 C 0.009 3.991 16 N -0.248 5.248 17 H 0.080 0.920 18 H 0.073 0.927 19 H 0.072 0.928 20 H 0.221 0.779 21 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 14.501 -13.026 -0.002 19.492 hybrid contribution -0.207 0.061 -0.017 0.216 sum 14.295 -12.964 -0.019 19.298 Atomic orbital electron populations 1.70036 1.08357 1.28663 1.51310 1.25938 0.95723 1.03481 0.93338 0.85584 0.79563 0.77471 0.79649 1.18578 1.20399 1.16554 1.20725 0.89549 0.93186 1.52473 0.96183 1.18525 0.95062 0.86157 0.99345 1.23588 0.86250 0.97876 0.83299 1.68470 1.14608 1.11133 1.30639 1.23900 0.87452 0.88780 0.98994 1.23770 1.11503 0.96790 0.98601 1.96714 1.86443 1.08778 1.99201 1.23899 0.87426 0.88786 0.99010 1.68472 1.14613 1.11181 1.30584 0.91985 0.92714 0.92847 0.77923 0.77921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.16 13.96 21.45 0.30 -58.87 14 2 C 0.01 0.77 5.47 84.65 0.46 1.23 14 3 Si 0.96 43.30 27.47 68.60 1.88 45.19 14 4 H -0.26 -11.27 7.11 99.48 0.71 -10.57 14 5 H -0.28 -12.29 7.11 99.48 0.71 -11.58 14 6 H -0.24 -10.08 6.54 99.48 0.65 -9.43 14 7 C -0.52 -30.80 9.65 25.60 0.25 -30.56 14 8 H 0.02 1.34 7.98 -2.91 -0.02 1.31 14 9 C 0.05 2.36 4.48 29.10 0.13 2.49 14 10 C 0.35 15.80 6.83 138.75 0.95 16.75 14 11 N -0.53 -21.60 10.33 -187.77 -1.94 -23.54 14 12 C 0.18 5.36 11.09 84.72 0.94 6.30 14 13 C -0.22 -6.05 6.27 22.48 0.14 -5.91 14 14 Br 0.01 0.10 33.77 -20.37 -0.69 -0.59 14 15 C 0.18 5.35 11.09 84.73 0.94 6.29 14 16 N -0.53 -21.58 10.33 -187.78 -1.94 -23.52 14 17 H 0.27 15.67 8.31 -92.70 -0.77 14.90 14 18 H 0.05 2.60 7.20 -2.39 -0.02 2.58 14 19 H 0.05 2.50 7.57 -2.39 -0.02 2.48 14 20 H 0.20 4.50 8.06 -2.91 -0.02 4.47 14 21 H 0.20 4.49 8.06 -2.91 -0.02 4.47 14 Total: -1.00 -68.72 218.67 2.61 -66.11 By element: Atomic # 1 Polarization: -2.56 SS G_CDS: 1.19 Total: -1.37 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: 3.81 Total: -3.41 kcal Atomic # 7 Polarization: -102.35 SS G_CDS: -3.58 Total: -105.93 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 1.88 Total: 45.19 kcal Atomic # 35 Polarization: 0.10 SS G_CDS: -0.69 Total: -0.59 kcal Total: -68.72 2.61 -66.11 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525640938.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.731 kcal (2) G-P(sol) polarization free energy of solvation -68.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds