Wall clock time and date at job start Mon Mar 30 2020 03:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86798 * 120.00323 * 2 1 4 4 H 1.48499 * 109.46851 * 359.97438 * 3 2 1 5 5 H 1.48499 * 109.47227 * 120.00118 * 3 2 1 6 6 H 1.48500 * 109.47296 * 240.00192 * 3 2 1 7 7 C 1.39964 * 120.00337 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00645 * 154.93657 * 7 2 1 9 9 C 1.41362 * 119.99272 * 334.93973 * 7 2 1 10 10 C 1.41058 * 121.05804 * 334.73704 * 9 7 2 11 11 N 1.31953 * 118.78787 * 179.74130 * 10 9 7 12 12 C 1.32023 * 121.12874 * 0.52749 * 11 10 9 13 13 C 1.50696 * 118.80532 * 179.72557 * 12 11 10 14 14 C 1.52999 * 109.47026 * 270.01601 * 13 12 11 15 15 C 1.53002 * 109.47350 * 180.02562 * 14 13 12 16 16 O 1.42897 * 109.47414 * 180.02562 * 15 14 13 17 17 N 1.31956 * 122.38960 * 359.74425 * 12 11 10 18 18 C 1.32115 * 121.06011 * 359.97438 * 17 12 11 19 19 Cl 1.73602 * 120.62804 * 179.97438 * 18 17 12 20 20 H 0.96997 * 119.99714 * 174.23147 * 1 2 3 21 21 H 1.07990 * 120.60306 * 359.97438 * 10 9 7 22 22 H 1.09003 * 109.47715 * 30.02250 * 13 12 11 23 23 H 1.09006 * 109.46967 * 150.02239 * 13 12 11 24 24 H 1.08997 * 109.47824 * 300.00308 * 14 13 12 25 25 H 1.09006 * 109.46727 * 60.00491 * 14 13 12 26 26 H 1.09004 * 109.46824 * 300.00416 * 15 14 13 27 27 H 1.08996 * 109.47066 * 59.99604 * 15 14 13 28 28 H 0.96694 * 114.00421 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 1.2774 2.7464 -0.0006 5 1 3.0961 1.6963 1.2125 6 1 3.0961 1.6963 -1.2125 7 6 2.0082 -1.2121 -0.0005 8 1 3.0119 -1.2560 -0.3967 9 6 1.4011 -2.3789 0.5175 10 6 0.3759 -2.2984 1.4831 11 7 -0.1631 -3.4160 1.9322 12 6 0.2488 -4.5938 1.5009 13 6 -0.3993 -5.8368 2.0540 14 6 0.3638 -6.3001 3.2965 15 6 -0.2937 -7.5625 3.8577 16 8 0.4186 -7.9948 5.0186 17 7 1.2075 -4.7222 0.6033 18 6 1.8059 -3.6627 0.0889 19 17 3.0665 -3.8446 -1.0908 20 1 -0.4849 -0.8358 -0.0844 21 1 0.0358 -1.3396 1.8452 22 1 -1.4330 -5.6190 2.3225 23 1 -0.3779 -6.6239 1.3001 24 1 1.3975 -6.5180 3.0280 25 1 0.3424 -5.5130 4.0504 26 1 -1.3275 -7.3449 4.1262 27 1 -0.2721 -8.3493 3.1037 28 1 0.0561 -8.7921 5.4283 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260808607.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:36 Heat of formation + Delta-G solvation = -48.908813 kcal Electronic energy + Delta-G solvation = -14698.022508 eV Core-core repulsion = 11966.578807 eV Total energy + Delta-G solvation = -2731.443701 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 242.056 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.48593 -37.03872 -35.61129 -35.03014 -33.22917 -32.09662 -30.14455 -27.05801 -24.55733 -22.97116 -21.94612 -20.74390 -18.36523 -17.32039 -16.70884 -15.76078 -15.30186 -14.52907 -14.13379 -13.98995 -13.61663 -13.06059 -12.58209 -12.39554 -12.09269 -11.82315 -11.37643 -11.01712 -10.91035 -10.69718 -10.65713 -10.57845 -10.37311 -9.86310 -9.66801 -9.27028 -9.16301 -8.27983 -8.08592 -7.60976 -4.89008 2.21441 2.33931 2.99412 3.01366 3.07288 3.20790 3.74998 4.18005 4.36615 5.10944 5.16315 5.19571 5.42224 5.52779 5.64370 5.95083 6.00557 6.07436 6.18945 6.46919 6.54559 6.63915 6.95093 7.17688 7.46532 7.55896 7.66112 7.86132 8.23410 8.42956 9.42876 9.58540 Molecular weight = 242.06amu Principal moments of inertia in cm(-1) A = 0.030117 B = 0.006281 C = 0.005554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.475976 B = 4456.581534 C = 5040.539369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.035 3.965 3 Si 1.070 2.930 4 H -0.269 1.269 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.462 4.462 8 H 0.096 0.904 9 C 0.008 3.992 10 C 0.035 3.965 11 N -0.479 5.479 12 C 0.155 3.845 13 C -0.016 4.016 14 C -0.111 4.111 15 C 0.077 3.923 16 O -0.576 6.576 17 N -0.475 5.475 18 C 0.090 3.910 19 Cl -0.067 7.067 20 H 0.301 0.699 21 H 0.153 0.847 22 H 0.073 0.927 23 H 0.071 0.929 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.045 0.955 27 H 0.044 0.956 28 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.105 -5.003 2.583 5.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.388 5.388 2 C -0.190 4.190 3 Si 0.892 3.108 4 H -0.193 1.193 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.490 4.490 8 H 0.114 0.886 9 C 0.000 4.000 10 C -0.139 4.139 11 N -0.191 5.191 12 C -0.107 4.107 13 C -0.055 4.055 14 C -0.149 4.149 15 C 0.000 4.000 16 O -0.381 6.381 17 N -0.190 5.190 18 C -0.087 4.087 19 Cl -0.039 7.039 20 H 0.115 0.885 21 H 0.170 0.830 22 H 0.091 0.909 23 H 0.089 0.911 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -0.373 -3.759 2.759 4.678 hybrid contribution 0.382 -1.484 -0.495 1.611 sum 0.009 -5.243 2.264 5.711 Atomic orbital electron populations 1.70510 1.08227 1.34615 1.25496 1.27398 0.95562 1.04963 0.91090 0.83541 0.75718 0.72936 0.78631 1.19341 1.19408 1.19497 1.20775 1.03045 0.92890 1.32277 0.88629 1.18951 0.94563 0.92808 0.93721 1.23067 0.98306 0.95865 0.96653 1.67463 1.27086 0.98873 1.25678 1.21483 0.97674 0.92135 0.99381 1.19709 0.97794 0.92538 0.95495 1.21475 1.00324 0.95832 0.97300 1.22249 0.94615 0.96552 0.86600 1.86511 1.58563 1.48464 1.44583 1.66688 1.07835 1.34863 1.09583 1.21622 0.98231 0.89612 0.99249 1.98258 1.51021 1.97977 1.56666 0.88485 0.82968 0.90883 0.91077 0.91392 0.91299 0.93708 0.93735 0.77987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.46 12.36 55.55 0.69 -17.77 15 2 C 0.03 0.79 4.99 -17.33 -0.09 0.70 15 3 Si 1.07 19.31 30.00 -169.99 -5.10 14.21 15 4 H -0.27 -4.83 7.11 56.52 0.40 -4.43 15 5 H -0.27 -4.69 7.11 56.52 0.40 -4.29 15 6 H -0.27 -4.64 7.11 56.52 0.40 -4.24 15 7 C -0.46 -11.18 8.54 -37.75 -0.32 -11.50 15 8 H 0.10 2.25 7.29 -52.49 -0.38 1.87 15 9 C 0.01 0.20 5.32 -106.49 -0.57 -0.37 15 10 C 0.03 0.87 9.24 -16.43 -0.15 0.72 15 11 N -0.48 -11.66 10.30 -10.10 -0.10 -11.76 15 12 C 0.15 3.59 6.90 -156.86 -1.08 2.51 15 13 C -0.02 -0.29 5.63 -27.89 -0.16 -0.45 15 14 C -0.11 -1.88 5.57 -26.73 -0.15 -2.03 15 15 C 0.08 1.02 7.05 37.16 0.26 1.28 15 16 O -0.58 -7.70 13.66 -35.23 -0.48 -8.18 15 17 N -0.48 -11.66 10.30 -7.23 -0.07 -11.74 15 18 C 0.09 2.24 7.41 -16.28 -0.12 2.12 15 19 Cl -0.07 -1.47 27.95 -51.86 -1.45 -2.92 15 20 H 0.30 7.54 6.65 -40.82 -0.27 7.27 15 21 H 0.15 3.74 6.59 -52.49 -0.35 3.39 15 22 H 0.07 1.23 8.14 -51.93 -0.42 0.81 15 23 H 0.07 1.21 8.14 -51.93 -0.42 0.78 15 24 H 0.07 1.26 8.14 -51.93 -0.42 0.84 15 25 H 0.07 1.27 8.14 -51.93 -0.42 0.84 15 26 H 0.04 0.52 8.14 -51.93 -0.42 0.10 15 27 H 0.04 0.52 8.14 -51.93 -0.42 0.10 15 28 H 0.37 2.92 9.12 45.56 0.42 3.34 15 LS Contribution 265.02 15.07 3.99 3.99 Total: -1.00 -27.97 265.02 -6.82 -34.79 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -1.92 Total: 6.38 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: -2.37 Total: -7.01 kcal Atomic # 7 Polarization: -41.78 SS G_CDS: 0.51 Total: -41.27 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: -0.48 Total: -8.18 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.10 Total: 14.21 kcal Atomic # 17 Polarization: -1.47 SS G_CDS: -1.45 Total: -2.92 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -27.97 -6.82 -34.79 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260808607.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.120 kcal (2) G-P(sol) polarization free energy of solvation -27.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds