Wall clock time and date at job start Mon Mar 30 2020 03:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.70546 * 2 1 4 4 C 1.53293 * 109.68442 * 120.53627 * 2 1 3 5 5 O 1.42959 * 109.26632 * 171.99859 * 4 2 1 6 6 C 1.42956 * 114.17131 * 297.51008 * 5 4 2 7 7 C 1.53295 * 109.26740 * 62.49393 * 6 5 4 8 8 N 1.47153 * 108.38636 * 307.72126 * 7 6 5 9 9 C 1.34774 * 120.98672 * 230.51420 * 8 7 6 10 10 O 1.21437 * 120.00019 * 186.63563 * 9 8 7 11 11 C 1.48832 * 119.99699 * 6.63603 * 9 8 7 12 12 O 1.21501 * 120.00191 * 6.78645 * 11 9 8 13 13 N 1.34777 * 119.99502 * 186.78852 * 11 9 8 14 14 C 1.36122 * 119.99819 * 180.02562 * 13 11 9 15 15 H 1.07999 * 119.99737 * 359.97438 * 14 13 11 16 16 C 1.39587 * 120.00272 * 180.02562 * 14 13 11 17 17 N 1.31007 * 119.99792 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99984 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47262 * 60.00201 * 18 16 14 20 20 H 1.48499 * 109.46646 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47130 * 299.99792 * 18 16 14 22 22 H 1.09005 * 109.47175 * 292.68284 * 1 2 3 23 23 H 1.08994 * 109.47451 * 52.68458 * 1 2 3 24 24 H 1.09001 * 109.47104 * 172.68416 * 1 2 3 25 25 H 1.08996 * 109.51430 * 291.95235 * 4 2 1 26 26 H 1.09006 * 109.50832 * 52.05098 * 4 2 1 27 27 H 1.09005 * 109.47285 * 302.56808 * 6 5 4 28 28 H 1.09003 * 109.51620 * 182.44638 * 6 5 4 29 29 H 1.09007 * 109.68256 * 188.00468 * 7 6 5 30 30 H 1.08999 * 109.71630 * 67.46889 * 7 6 5 31 31 H 0.96999 * 120.00398 * 359.97438 * 13 11 9 32 32 H 0.96998 * 120.00371 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0262 0.0000 4 6 2.0463 -0.7333 1.2432 5 8 3.4635 -0.8921 1.1425 6 6 3.8860 -1.6894 0.0337 7 6 3.4639 -1.0049 -1.2714 8 7 2.0256 -0.7039 -1.1935 9 6 1.1870 -1.0618 -2.1860 10 8 0.0279 -0.7005 -2.1615 11 6 1.6816 -1.9000 -3.3120 12 8 2.8039 -2.3641 -3.2766 13 7 0.8845 -2.1441 -4.3710 14 6 1.3366 -2.9111 -5.4007 15 1 2.3342 -3.3237 -5.3692 16 6 0.5113 -3.1635 -6.4978 17 7 -0.6986 -2.6627 -6.5362 18 14 1.1321 -4.2155 -7.9111 19 1 1.4807 -5.5677 -7.4058 20 1 0.0719 -4.3319 -8.9443 21 1 2.3369 -3.5837 -8.5064 22 1 -0.3634 0.3963 0.9482 23 1 -0.3634 0.6229 -0.8172 24 1 -0.3633 -1.0193 -0.1309 25 1 1.8074 -0.1525 2.1340 26 1 1.5740 -1.7135 1.3100 27 1 3.4211 -2.6734 0.0956 28 1 4.9705 -1.7964 0.0544 29 1 3.6544 -1.6705 -2.1134 30 1 4.0261 -0.0800 -1.4001 31 1 -0.0116 -1.7739 -4.3992 32 1 -1.2723 -2.8383 -7.2984 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035776951.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:02 Heat of formation + Delta-G solvation = -85.797078 kcal Electronic energy + Delta-G solvation = -18070.627737 eV Core-core repulsion = 15032.708370 eV Total energy + Delta-G solvation = -3037.919366 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.35682 -38.38749 -37.27618 -34.93449 -34.04604 -32.44931 -31.52056 -28.48245 -26.19663 -25.86833 -23.44637 -22.60898 -20.86947 -19.01093 -18.10854 -16.81676 -16.27508 -16.03715 -15.41164 -15.05175 -14.82416 -14.69438 -14.35489 -14.01214 -13.72695 -12.97248 -12.55796 -12.43091 -12.13259 -11.91247 -11.59373 -11.49407 -11.24635 -10.96880 -10.67352 -10.54086 -10.47975 -10.00289 -9.82608 -9.56485 -8.35667 -8.17344 -7.78000 -6.77448 -4.10451 2.34526 3.06634 3.11674 3.11990 3.21066 3.92707 3.98422 4.16483 4.70427 4.89002 5.08116 5.11102 5.26009 5.36281 5.43381 5.57639 5.69814 5.78095 5.82107 5.92778 6.09369 6.31520 6.50184 6.61974 6.93768 7.20482 7.25346 7.61504 7.75073 8.26011 8.53891 8.85979 9.20174 9.74339 10.36464 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.042390 B = 0.006237 C = 0.005552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.378434 B = 4487.951360 C = 5042.278903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.106 3.894 3 H 0.075 0.925 4 C 0.054 3.946 5 O -0.389 6.389 6 C 0.051 3.949 7 C 0.016 3.984 8 N -0.593 5.593 9 C 0.517 3.483 10 O -0.540 6.540 11 C 0.388 3.612 12 O -0.586 6.586 13 N -0.488 5.488 14 C -0.308 4.308 15 H 0.115 0.885 16 C 0.033 3.967 17 N -0.864 5.864 18 Si 0.941 3.059 19 H -0.268 1.268 20 H -0.280 1.280 21 H -0.268 1.268 22 H 0.044 0.956 23 H 0.085 0.915 24 H 0.064 0.936 25 H 0.100 0.900 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.101 0.899 29 H 0.180 0.820 30 H 0.059 0.941 31 H 0.406 0.594 32 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.649 2.754 9.262 10.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.002 3.998 3 H 0.093 0.907 4 C -0.024 4.024 5 O -0.308 6.308 6 C -0.026 4.026 7 C -0.105 4.105 8 N -0.329 5.329 9 C 0.304 3.696 10 O -0.418 6.418 11 C 0.174 3.826 12 O -0.478 6.478 13 N -0.121 5.121 14 C -0.439 4.439 15 H 0.132 0.868 16 C -0.175 4.175 17 N -0.502 5.502 18 Si 0.766 3.234 19 H -0.193 1.193 20 H -0.205 1.205 21 H -0.193 1.193 22 H 0.063 0.937 23 H 0.104 0.896 24 H 0.083 0.917 25 H 0.118 0.882 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.119 0.881 29 H 0.195 0.805 30 H 0.077 0.923 31 H 0.241 0.759 32 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.662 2.737 9.271 10.337 hybrid contribution -0.436 -0.241 -0.711 0.868 sum 3.226 2.496 8.560 9.482 Atomic orbital electron populations 1.22123 0.92172 1.04144 1.01203 1.21959 0.96454 0.96005 0.85372 0.90720 1.23025 0.81883 1.00077 0.97389 1.87882 1.21690 1.72476 1.48736 1.23015 1.00355 0.93719 0.85555 1.24033 0.79331 1.03570 1.03581 1.47904 1.08961 1.57532 1.18498 1.20481 0.85279 0.80322 0.83494 1.90706 1.18148 1.55251 1.77652 1.18987 0.87644 0.90298 0.85682 1.90018 1.19980 1.58417 1.79337 1.41573 1.15583 1.40314 1.14595 1.19887 1.01793 1.26543 0.95663 0.86773 1.25632 0.94921 0.97461 0.99444 1.69468 1.07329 1.41477 1.31887 0.85749 0.78571 0.79917 0.79119 1.19271 1.20516 1.19251 0.93706 0.89609 0.91746 0.88235 0.92823 0.92773 0.88077 0.80454 0.92265 0.75852 0.90661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 7.64 37.16 0.28 -1.84 16 2 C 0.11 1.63 3.68 -67.42 -0.25 1.38 16 3 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 4 C 0.05 0.73 6.28 37.31 0.23 0.96 16 5 O -0.39 -5.80 10.74 -35.23 -0.38 -6.17 16 6 C 0.05 0.74 6.98 37.31 0.26 1.00 16 7 C 0.02 0.27 6.50 -3.53 -0.02 0.25 16 8 N -0.59 -10.96 3.02 -165.48 -0.50 -11.46 16 9 C 0.52 11.24 7.50 -11.88 -0.09 11.15 16 10 O -0.54 -12.15 12.29 5.42 0.07 -12.08 16 11 C 0.39 9.43 7.71 -11.87 -0.09 9.34 16 12 O -0.59 -14.59 12.68 5.36 0.07 -14.52 16 13 N -0.49 -12.60 5.24 -11.59 -0.06 -12.66 16 14 C -0.31 -8.16 9.67 -15.14 -0.15 -8.31 16 15 H 0.11 3.05 7.15 -52.49 -0.38 2.68 16 16 C 0.03 0.84 5.51 -17.40 -0.10 0.74 16 17 N -0.86 -22.47 13.03 55.53 0.72 -21.75 16 18 Si 0.94 19.39 29.56 -169.99 -5.02 14.37 16 19 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 20 H -0.28 -5.63 7.11 56.52 0.40 -5.22 16 21 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 22 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.09 1.48 6.52 -51.93 -0.34 1.14 16 24 H 0.06 1.10 7.08 -51.93 -0.37 0.73 16 25 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.18 3.49 3.83 -56.58 -0.22 3.28 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.41 10.59 7.37 -40.82 -0.30 10.29 16 32 H 0.28 6.83 8.30 -40.82 -0.34 6.49 16 LS Contribution 266.60 15.07 4.02 4.02 Total: -1.00 -28.17 266.60 -4.69 -32.86 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: -3.69 Total: 12.73 kcal Atomic # 6 Polarization: 14.58 SS G_CDS: 0.08 Total: 14.66 kcal Atomic # 7 Polarization: -46.03 SS G_CDS: 0.16 Total: -45.87 kcal Atomic # 8 Polarization: -32.53 SS G_CDS: -0.24 Total: -32.78 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.02 Total: 14.37 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -28.17 -4.69 -32.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035776951.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.933 kcal (2) G-P(sol) polarization free energy of solvation -28.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds