Wall clock time and date at job start Mon Mar 30 2020 03:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.70546 * 2 1 4 4 C 1.53293 * 109.68442 * 120.53627 * 2 1 3 5 5 O 1.42959 * 109.26632 * 171.99859 * 4 2 1 6 6 C 1.42956 * 114.17131 * 297.51008 * 5 4 2 7 7 C 1.53295 * 109.26740 * 62.49393 * 6 5 4 8 8 N 1.47153 * 108.38636 * 307.72126 * 7 6 5 9 9 C 1.34774 * 120.98672 * 230.51420 * 8 7 6 10 10 O 1.21437 * 120.00019 * 186.63563 * 9 8 7 11 11 C 1.48832 * 119.99699 * 6.63603 * 9 8 7 12 12 O 1.21501 * 120.00191 * 6.78645 * 11 9 8 13 13 N 1.34777 * 119.99502 * 186.78852 * 11 9 8 14 14 C 1.36122 * 119.99819 * 180.02562 * 13 11 9 15 15 H 1.07999 * 119.99737 * 359.97438 * 14 13 11 16 16 C 1.39587 * 120.00272 * 180.02562 * 14 13 11 17 17 N 1.31007 * 119.99792 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99984 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47262 * 60.00201 * 18 16 14 20 20 H 1.48499 * 109.46646 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47130 * 299.99792 * 18 16 14 22 22 H 1.09005 * 109.47175 * 292.68284 * 1 2 3 23 23 H 1.08994 * 109.47451 * 52.68458 * 1 2 3 24 24 H 1.09001 * 109.47104 * 172.68416 * 1 2 3 25 25 H 1.08996 * 109.51430 * 291.95235 * 4 2 1 26 26 H 1.09006 * 109.50832 * 52.05098 * 4 2 1 27 27 H 1.09005 * 109.47285 * 302.56808 * 6 5 4 28 28 H 1.09003 * 109.51620 * 182.44638 * 6 5 4 29 29 H 1.09007 * 109.68256 * 188.00468 * 7 6 5 30 30 H 1.08999 * 109.71630 * 67.46889 * 7 6 5 31 31 H 0.96999 * 120.00398 * 359.97438 * 13 11 9 32 32 H 0.96998 * 120.00371 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0262 0.0000 4 6 2.0463 -0.7333 1.2432 5 8 3.4635 -0.8921 1.1425 6 6 3.8860 -1.6894 0.0337 7 6 3.4639 -1.0049 -1.2714 8 7 2.0256 -0.7039 -1.1935 9 6 1.1870 -1.0618 -2.1860 10 8 0.0279 -0.7005 -2.1615 11 6 1.6816 -1.9000 -3.3120 12 8 2.8039 -2.3641 -3.2766 13 7 0.8845 -2.1441 -4.3710 14 6 1.3366 -2.9111 -5.4007 15 1 2.3342 -3.3237 -5.3692 16 6 0.5113 -3.1635 -6.4978 17 7 -0.6986 -2.6627 -6.5362 18 14 1.1321 -4.2155 -7.9111 19 1 1.4807 -5.5677 -7.4058 20 1 0.0719 -4.3319 -8.9443 21 1 2.3369 -3.5837 -8.5064 22 1 -0.3634 0.3963 0.9482 23 1 -0.3634 0.6229 -0.8172 24 1 -0.3633 -1.0193 -0.1309 25 1 1.8074 -0.1525 2.1340 26 1 1.5740 -1.7135 1.3100 27 1 3.4211 -2.6734 0.0956 28 1 4.9705 -1.7964 0.0544 29 1 3.6544 -1.6705 -2.1134 30 1 4.0261 -0.0800 -1.4001 31 1 -0.0116 -1.7739 -4.3992 32 1 -1.2723 -2.8383 -7.2984 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035776951.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:01 Heat of formation + Delta-G solvation = -106.937395 kcal Electronic energy + Delta-G solvation = -18071.544450 eV Core-core repulsion = 15032.708370 eV Total energy + Delta-G solvation = -3038.836079 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.93402 -39.94878 -38.96384 -36.67324 -35.64731 -33.80973 -33.43425 -29.86361 -27.77695 -27.38325 -25.10685 -23.92612 -22.37613 -20.80278 -19.89697 -18.47619 -17.77425 -17.30151 -17.08740 -16.71288 -16.20042 -16.08159 -15.89434 -15.69925 -15.38759 -14.68579 -14.09380 -13.76813 -13.71905 -13.54789 -12.99019 -12.95007 -12.67685 -12.57205 -12.18878 -12.12203 -11.86600 -11.67326 -11.26694 -11.19579 -10.30791 -9.59799 -9.53289 -8.67827 -6.13019 0.55746 1.40459 1.49118 1.52541 1.65223 2.25287 2.33193 2.82659 3.03343 3.13479 3.68198 3.84364 3.97451 4.07154 4.11035 4.21571 4.41894 4.55916 4.70152 4.81815 4.84669 5.05494 5.07022 5.21108 5.27809 5.56050 5.66914 6.06577 6.13886 6.34069 6.77360 6.95527 7.25794 7.78604 8.47030 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.042390 B = 0.006237 C = 0.005552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.378434 B = 4487.951360 C = 5042.278903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.099 3.901 3 H 0.091 0.909 4 C 0.056 3.944 5 O -0.391 6.391 6 C 0.058 3.942 7 C 0.013 3.987 8 N -0.588 5.588 9 C 0.517 3.483 10 O -0.553 6.553 11 C 0.386 3.614 12 O -0.596 6.596 13 N -0.504 5.504 14 C -0.345 4.345 15 H 0.104 0.896 16 C -0.003 4.003 17 N -0.895 5.895 18 Si 1.010 2.990 19 H -0.263 1.263 20 H -0.269 1.269 21 H -0.263 1.263 22 H 0.085 0.915 23 H 0.061 0.939 24 H 0.040 0.960 25 H 0.138 0.862 26 H 0.050 0.950 27 H 0.046 0.954 28 H 0.130 0.870 29 H 0.154 0.846 30 H 0.074 0.926 31 H 0.400 0.600 32 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.447 3.037 10.488 11.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.003 4.003 3 H 0.109 0.891 4 C -0.021 4.021 5 O -0.309 6.309 6 C -0.019 4.019 7 C -0.108 4.108 8 N -0.322 5.322 9 C 0.302 3.698 10 O -0.432 6.432 11 C 0.172 3.828 12 O -0.487 6.487 13 N -0.136 5.136 14 C -0.475 4.475 15 H 0.121 0.879 16 C -0.208 4.208 17 N -0.532 5.532 18 Si 0.831 3.169 19 H -0.188 1.188 20 H -0.193 1.193 21 H -0.187 1.187 22 H 0.103 0.897 23 H 0.080 0.920 24 H 0.059 0.941 25 H 0.155 0.845 26 H 0.068 0.932 27 H 0.065 0.935 28 H 0.148 0.852 29 H 0.170 0.830 30 H 0.092 0.908 31 H 0.235 0.765 32 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.485 3.032 10.535 11.845 hybrid contribution -0.642 -0.247 -0.946 1.170 sum 3.843 2.785 9.589 10.699 Atomic orbital electron populations 1.21980 0.92112 1.02383 1.02437 1.22304 0.96603 0.96769 0.84616 0.89113 1.23174 0.81108 1.00311 0.97513 1.87894 1.22401 1.72306 1.48297 1.23001 1.02001 0.92841 0.84107 1.23962 0.78630 1.03978 1.04249 1.48033 1.09243 1.56497 1.18454 1.20053 0.85517 0.80541 0.83713 1.90717 1.18643 1.55870 1.78003 1.19648 0.87355 0.89847 0.85974 1.90062 1.20222 1.58567 1.79886 1.41674 1.15539 1.41088 1.15340 1.20003 1.02039 1.28332 0.97078 0.87858 1.26560 0.94808 0.98090 1.01351 1.69540 1.08314 1.42423 1.32918 0.84742 0.78299 0.78046 0.75804 1.18809 1.19289 1.18718 0.89669 0.91992 0.94077 0.84454 0.93163 0.93521 0.85248 0.82983 0.90755 0.76506 0.90038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.81 7.64 71.98 0.55 -3.26 16 2 C 0.10 2.82 3.68 44.96 0.17 2.98 16 3 H 0.09 2.35 8.14 -2.38 -0.02 2.33 16 4 C 0.06 1.32 6.28 72.08 0.45 1.77 16 5 O -0.39 -10.28 10.74 -148.98 -1.60 -11.88 16 6 C 0.06 1.54 6.98 72.08 0.50 2.05 16 7 C 0.01 0.41 6.50 86.35 0.56 0.97 16 8 N -0.59 -21.17 3.02 -795.77 -2.40 -23.57 16 9 C 0.52 22.71 7.50 87.08 0.65 23.37 16 10 O -0.55 -25.37 12.29 -3.52 -0.04 -25.42 16 11 C 0.39 19.30 7.71 87.08 0.67 19.97 16 12 O -0.60 -30.40 12.68 -3.72 -0.05 -30.45 16 13 N -0.50 -27.01 5.24 -308.87 -1.62 -28.63 16 14 C -0.34 -18.82 9.67 84.35 0.82 -18.01 16 15 H 0.10 5.72 7.15 -2.91 -0.02 5.70 16 16 C 0.00 -0.17 5.51 85.14 0.47 0.30 16 17 N -0.89 -47.27 13.03 21.76 0.28 -46.99 16 18 Si 1.01 39.71 29.56 68.60 2.03 41.74 16 19 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 20 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 21 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 22 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 23 H 0.06 2.09 6.52 -2.39 -0.02 2.08 16 24 H 0.04 1.37 7.08 -2.39 -0.02 1.35 16 25 H 0.14 2.25 8.14 -2.39 -0.02 2.23 16 26 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 27 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 28 H 0.13 2.74 8.14 -2.39 -0.02 2.72 16 29 H 0.15 5.98 3.83 -76.07 -0.29 5.69 16 30 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.40 21.84 7.37 -92.71 -0.68 21.16 16 32 H 0.29 14.05 8.30 -92.71 -0.77 13.28 16 Total: -1.00 -61.66 266.60 1.63 -60.03 By element: Atomic # 1 Polarization: 34.83 SS G_CDS: 0.19 Total: 35.02 kcal Atomic # 6 Polarization: 25.30 SS G_CDS: 4.84 Total: 30.14 kcal Atomic # 7 Polarization: -95.45 SS G_CDS: -3.74 Total: -99.19 kcal Atomic # 8 Polarization: -66.05 SS G_CDS: -1.69 Total: -67.74 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 2.03 Total: 41.74 kcal Total: -61.66 1.63 -60.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035776951.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.906 kcal (2) G-P(sol) polarization free energy of solvation -61.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds