Wall clock time and date at job start Mon Mar 30 2020 03:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31019 * 1 3 3 Si 1.86791 * 120.00214 * 2 1 4 4 H 1.48507 * 109.47105 * 270.00016 * 3 2 1 5 5 H 1.48497 * 109.47139 * 30.00087 * 3 2 1 6 6 H 1.48498 * 109.47368 * 150.00113 * 3 2 1 7 7 C 1.39596 * 120.00038 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99570 * 359.97438 * 7 2 1 9 9 N 1.36108 * 120.00136 * 179.97438 * 7 2 1 10 10 C 1.34783 * 120.00111 * 179.97438 * 9 7 2 11 11 O 1.21496 * 119.99828 * 0.02562 * 10 9 7 12 12 C 1.48831 * 119.99788 * 180.02562 * 10 9 7 13 13 O 1.21432 * 120.00342 * 359.97438 * 12 10 9 14 14 N 1.34778 * 119.99665 * 180.02562 * 12 10 9 15 15 C 1.46503 * 120.00121 * 179.97438 * 14 12 10 16 16 C 1.53175 * 109.53763 * 85.44463 * 15 14 12 17 17 C 1.53092 * 109.16179 * 176.85076 * 16 15 14 18 18 O 1.42910 * 109.41107 * 302.39040 * 17 16 15 19 19 C 1.42900 * 114.09727 * 61.16189 * 18 17 16 20 20 C 1.53090 * 109.41229 * 298.83586 * 19 18 17 21 21 H 0.96992 * 119.99849 * 0.02562 * 1 2 3 22 22 H 0.97006 * 120.00173 * 0.02562 * 9 7 2 23 23 H 0.97006 * 119.99838 * 0.02562 * 14 12 10 24 24 H 1.08997 * 109.61242 * 325.22842 * 15 14 12 25 25 H 1.09006 * 109.52647 * 296.75376 * 16 15 14 26 26 H 1.08998 * 109.52537 * 56.94268 * 16 15 14 27 27 H 1.08998 * 109.48147 * 182.40843 * 17 16 15 28 28 H 1.08997 * 109.48550 * 62.37144 * 17 16 15 29 29 H 1.09003 * 109.47953 * 178.86010 * 19 18 17 30 30 H 1.08995 * 109.49265 * 58.82602 * 19 18 17 31 31 H 1.09001 * 109.52724 * 297.70937 * 20 19 18 32 32 H 1.09000 * 109.52338 * 177.51272 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2442 1.6176 0.0000 4 1 2.4917 2.0463 -1.4001 5 1 1.4417 2.6526 0.7000 6 1 3.5418 1.4401 0.7000 7 6 2.0082 -1.2089 -0.0005 8 1 1.4681 -2.1442 -0.0005 9 7 3.3693 -1.2090 -0.0011 10 6 4.0432 -2.3762 -0.0011 11 8 3.4357 -3.4284 -0.0011 12 6 5.5315 -2.3761 -0.0011 13 8 6.1387 -1.3245 -0.0015 14 7 6.2054 -3.5434 -0.0016 15 6 7.6704 -3.5434 -0.0022 16 6 8.1832 -3.4291 1.4367 17 6 9.7120 -3.5091 1.4331 18 8 10.1220 -4.7353 0.8243 19 6 9.7114 -4.8766 -0.5371 20 6 8.1826 -4.8516 -0.6127 21 1 -0.4849 0.8400 -0.0004 22 1 3.8543 -0.3689 -0.0007 23 1 5.7203 -4.3834 -0.0023 24 1 8.0360 -2.6999 -0.5877 25 1 7.8694 -2.4752 1.8606 26 1 7.7771 -4.2454 2.0341 27 1 10.0804 -3.4713 2.4582 28 1 10.1187 -2.6696 0.8693 29 1 10.0793 -5.8240 -0.9313 30 1 10.1180 -4.0551 -1.1268 31 1 7.7764 -5.6966 -0.0566 32 1 7.8682 -4.9149 -1.6544 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036319826.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:58 Heat of formation + Delta-G solvation = -121.916256 kcal Electronic energy + Delta-G solvation = -17380.305264 eV Core-core repulsion = 14340.819652 eV Total energy + Delta-G solvation = -3039.485611 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.14658 -39.03489 -37.36848 -35.25667 -34.20974 -31.98577 -31.34658 -31.29309 -26.31961 -24.75956 -23.77505 -22.28843 -20.53136 -19.48352 -18.98110 -17.19515 -16.41825 -16.18155 -15.98672 -15.20268 -15.07963 -14.88143 -14.43748 -13.90680 -13.60009 -13.47977 -12.86584 -12.81734 -12.48597 -12.44197 -11.68412 -11.50943 -11.31166 -11.08282 -10.78241 -10.62729 -10.54436 -10.14239 -9.86507 -9.80054 -8.92458 -8.45098 -8.44527 -6.61665 -4.03167 2.24406 3.01762 3.04954 3.07959 3.19698 3.68216 3.93000 4.09867 4.50290 4.65949 4.68555 4.77770 4.98020 5.03405 5.09923 5.25811 5.33532 5.46781 5.51067 5.65737 5.67051 5.81791 5.94312 6.11529 6.62714 6.97245 7.23054 7.61180 7.88847 8.20786 8.47243 8.71270 9.16179 9.58359 10.48374 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.049248 B = 0.005082 C = 0.004787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.415431 B = 5507.864554 C = 5848.010043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.053 3.947 3 Si 0.876 3.124 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.260 1.260 7 C -0.309 4.309 8 H 0.128 0.872 9 N -0.526 5.526 10 C 0.403 3.597 11 O -0.579 6.579 12 C 0.515 3.485 13 O -0.551 6.551 14 N -0.708 5.708 15 C 0.144 3.856 16 C -0.169 4.169 17 C 0.065 3.935 18 O -0.384 6.384 19 C 0.066 3.934 20 C -0.165 4.165 21 H 0.282 0.718 22 H 0.384 0.616 23 H 0.411 0.589 24 H 0.089 0.911 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.096 0.904 28 H 0.053 0.947 29 H 0.098 0.902 30 H 0.053 0.947 31 H 0.080 0.920 32 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.156 -5.011 -0.037 17.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.156 4.156 3 Si 0.701 3.299 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.185 1.185 7 C -0.439 4.439 8 H 0.145 0.855 9 N -0.163 5.163 10 C 0.187 3.813 11 O -0.465 6.465 12 C 0.300 3.700 13 O -0.428 6.428 14 N -0.361 5.361 15 C 0.039 3.961 16 C -0.208 4.208 17 C -0.012 4.012 18 O -0.303 6.303 19 C -0.011 4.011 20 C -0.203 4.203 21 H 0.093 0.907 22 H 0.218 0.782 23 H 0.248 0.752 24 H 0.107 0.893 25 H 0.100 0.900 26 H 0.094 0.906 27 H 0.114 0.886 28 H 0.071 0.929 29 H 0.116 0.884 30 H 0.071 0.929 31 H 0.098 0.902 32 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 17.080 -4.958 0.054 17.785 hybrid contribution 0.028 1.164 -0.119 1.171 sum 17.107 -3.794 -0.065 17.523 Atomic orbital electron populations 1.69441 1.06122 1.28688 1.44289 1.25238 0.95549 0.98598 0.96167 0.86672 0.80413 0.83030 0.79806 1.18875 1.19489 1.18463 1.19568 0.79129 0.97102 1.48065 0.85488 1.41831 1.07584 1.06933 1.59956 1.18830 0.86412 0.85293 0.90735 1.90622 1.68742 1.30344 1.56833 1.20662 0.89857 0.83594 0.75902 1.90666 1.70886 1.31354 1.49909 1.45727 1.05971 1.09496 1.74867 1.20939 0.80368 0.98512 0.96304 1.22646 0.96486 1.03973 0.97681 1.22571 0.93424 0.86502 0.98739 1.87926 1.77065 1.39385 1.25924 1.22529 0.92827 1.02301 0.83484 1.22512 0.97275 0.97924 1.02572 0.90740 0.78161 0.75237 0.89315 0.90031 0.90594 0.88577 0.92875 0.88427 0.92869 0.90171 0.89934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.52 13.94 55.53 0.77 -22.74 16 2 C 0.05 1.41 5.51 -17.39 -0.10 1.31 16 3 Si 0.88 19.26 27.74 -169.99 -4.72 14.54 16 4 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 5 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 6 H -0.26 -5.54 6.53 56.52 0.37 -5.17 16 7 C -0.31 -8.61 10.16 -15.15 -0.15 -8.77 16 8 H 0.13 3.94 7.36 -52.49 -0.39 3.56 16 9 N -0.53 -13.26 5.06 -11.59 -0.06 -13.32 16 10 C 0.40 9.72 7.82 -11.87 -0.09 9.63 16 11 O -0.58 -15.25 16.03 5.37 0.09 -15.17 16 12 C 0.52 10.48 7.84 -11.87 -0.09 10.39 16 13 O -0.55 -11.84 16.13 5.43 0.09 -11.75 16 14 N -0.71 -11.34 5.07 -54.26 -0.28 -11.62 16 15 C 0.14 1.86 2.54 -67.75 -0.17 1.68 16 16 C -0.17 -2.04 5.72 -26.59 -0.15 -2.19 16 17 C 0.06 0.66 6.84 37.21 0.25 0.91 16 18 O -0.38 -4.21 10.77 -35.23 -0.38 -4.59 16 19 C 0.07 0.59 6.84 37.20 0.25 0.84 16 20 C -0.16 -1.63 5.61 -26.59 -0.15 -1.78 16 21 H 0.28 7.12 8.30 -40.82 -0.34 6.78 16 22 H 0.38 9.08 5.22 -40.82 -0.21 8.86 16 23 H 0.41 6.28 8.06 -40.82 -0.33 5.95 16 24 H 0.09 1.23 7.58 -51.93 -0.39 0.84 16 25 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 27 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 276.02 15.07 4.16 4.16 Total: -1.00 -31.08 276.02 -4.59 -35.67 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -3.87 Total: 12.79 kcal Atomic # 6 Polarization: 12.43 SS G_CDS: -0.40 Total: 12.03 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: 0.44 Total: -47.68 kcal Atomic # 8 Polarization: -31.31 SS G_CDS: -0.21 Total: -31.51 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -4.72 Total: 14.54 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -31.08 -4.59 -35.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036319826.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.246 kcal (2) G-P(sol) polarization free energy of solvation -31.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds