Wall clock time and date at job start Mon Mar 30 2020 03:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31019 * 1 3 3 Si 1.86791 * 120.00214 * 2 1 4 4 H 1.48507 * 109.47105 * 270.00016 * 3 2 1 5 5 H 1.48497 * 109.47139 * 30.00087 * 3 2 1 6 6 H 1.48498 * 109.47368 * 150.00113 * 3 2 1 7 7 C 1.39596 * 120.00038 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99570 * 359.97438 * 7 2 1 9 9 N 1.36108 * 120.00136 * 179.97438 * 7 2 1 10 10 C 1.34783 * 120.00111 * 179.97438 * 9 7 2 11 11 O 1.21496 * 119.99828 * 0.02562 * 10 9 7 12 12 C 1.48831 * 119.99788 * 180.02562 * 10 9 7 13 13 O 1.21432 * 120.00342 * 359.97438 * 12 10 9 14 14 N 1.34778 * 119.99665 * 180.02562 * 12 10 9 15 15 C 1.46503 * 120.00121 * 179.97438 * 14 12 10 16 16 C 1.53175 * 109.53763 * 85.44463 * 15 14 12 17 17 C 1.53092 * 109.16179 * 176.85076 * 16 15 14 18 18 O 1.42910 * 109.41107 * 302.39040 * 17 16 15 19 19 C 1.42900 * 114.09727 * 61.16189 * 18 17 16 20 20 C 1.53090 * 109.41229 * 298.83586 * 19 18 17 21 21 H 0.96992 * 119.99849 * 0.02562 * 1 2 3 22 22 H 0.97006 * 120.00173 * 0.02562 * 9 7 2 23 23 H 0.97006 * 119.99838 * 0.02562 * 14 12 10 24 24 H 1.08997 * 109.61242 * 325.22842 * 15 14 12 25 25 H 1.09006 * 109.52647 * 296.75376 * 16 15 14 26 26 H 1.08998 * 109.52537 * 56.94268 * 16 15 14 27 27 H 1.08998 * 109.48147 * 182.40843 * 17 16 15 28 28 H 1.08997 * 109.48550 * 62.37144 * 17 16 15 29 29 H 1.09003 * 109.47953 * 178.86010 * 19 18 17 30 30 H 1.08995 * 109.49265 * 58.82602 * 19 18 17 31 31 H 1.09001 * 109.52724 * 297.70937 * 20 19 18 32 32 H 1.09000 * 109.52338 * 177.51272 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2442 1.6176 0.0000 4 1 2.4917 2.0463 -1.4001 5 1 1.4417 2.6526 0.7000 6 1 3.5418 1.4401 0.7000 7 6 2.0082 -1.2089 -0.0005 8 1 1.4681 -2.1442 -0.0005 9 7 3.3693 -1.2090 -0.0011 10 6 4.0432 -2.3762 -0.0011 11 8 3.4357 -3.4284 -0.0011 12 6 5.5315 -2.3761 -0.0011 13 8 6.1387 -1.3245 -0.0015 14 7 6.2054 -3.5434 -0.0016 15 6 7.6704 -3.5434 -0.0022 16 6 8.1832 -3.4291 1.4367 17 6 9.7120 -3.5091 1.4331 18 8 10.1220 -4.7353 0.8243 19 6 9.7114 -4.8766 -0.5371 20 6 8.1826 -4.8516 -0.6127 21 1 -0.4849 0.8400 -0.0004 22 1 3.8543 -0.3689 -0.0007 23 1 5.7203 -4.3834 -0.0023 24 1 8.0360 -2.6999 -0.5877 25 1 7.8694 -2.4752 1.8606 26 1 7.7771 -4.2454 2.0341 27 1 10.0804 -3.4713 2.4582 28 1 10.1187 -2.6696 0.8693 29 1 10.0793 -5.8240 -0.9313 30 1 10.1180 -4.0551 -1.1268 31 1 7.7764 -5.6966 -0.0566 32 1 7.8682 -4.9149 -1.6544 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036319826.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:58 Heat of formation + Delta-G solvation = -147.058237 kcal Electronic energy + Delta-G solvation = -17381.395502 eV Core-core repulsion = 14340.819652 eV Total energy + Delta-G solvation = -3040.575849 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.61613 -40.27316 -39.09619 -36.73954 -36.00926 -33.99831 -32.57450 -32.10514 -28.16668 -26.08828 -24.60516 -23.83042 -21.57897 -21.35300 -20.74933 -18.81669 -17.89808 -17.34871 -17.00873 -16.86159 -16.61422 -16.07516 -15.70335 -15.35246 -15.06676 -14.72216 -14.59747 -14.40450 -14.32765 -13.33353 -13.10896 -12.73256 -12.57910 -12.43877 -12.33400 -12.01398 -11.98763 -11.73241 -11.42235 -10.74447 -10.49893 -10.30577 -10.25396 -8.64430 -6.18645 0.48243 1.27618 1.31841 1.37688 1.67242 2.08670 2.25387 2.92098 3.03710 3.05594 3.60723 3.74960 3.79103 3.97496 4.05232 4.26473 4.39671 4.54633 4.67580 4.77417 4.81842 5.02508 5.05424 5.11657 5.24226 5.31924 5.71651 6.05553 6.22631 6.34958 6.56469 6.88160 7.12107 7.59647 8.50116 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.049248 B = 0.005082 C = 0.004787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.415431 B = 5507.864554 C = 5848.010043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.012 3.988 3 Si 0.948 3.052 4 H -0.251 1.251 5 H -0.256 1.256 6 H -0.248 1.248 7 C -0.340 4.340 8 H 0.078 0.922 9 N -0.531 5.531 10 C 0.404 3.596 11 O -0.604 6.604 12 C 0.525 3.475 13 O -0.559 6.559 14 N -0.688 5.688 15 C 0.137 3.863 16 C -0.166 4.166 17 C 0.069 3.931 18 O -0.397 6.397 19 C 0.064 3.936 20 C -0.158 4.158 21 H 0.291 0.709 22 H 0.393 0.607 23 H 0.416 0.584 24 H 0.084 0.916 25 H 0.065 0.935 26 H 0.074 0.926 27 H 0.111 0.889 28 H 0.061 0.939 29 H 0.120 0.880 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.851 -4.478 -0.235 20.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.193 4.193 3 Si 0.768 3.232 4 H -0.175 1.175 5 H -0.180 1.180 6 H -0.172 1.172 7 C -0.470 4.470 8 H 0.096 0.904 9 N -0.169 5.169 10 C 0.189 3.811 11 O -0.492 6.492 12 C 0.307 3.693 13 O -0.438 6.438 14 N -0.340 5.340 15 C 0.033 3.967 16 C -0.205 4.205 17 C -0.008 4.008 18 O -0.316 6.316 19 C -0.013 4.013 20 C -0.196 4.196 21 H 0.101 0.899 22 H 0.229 0.771 23 H 0.253 0.747 24 H 0.102 0.898 25 H 0.083 0.917 26 H 0.093 0.907 27 H 0.129 0.871 28 H 0.080 0.920 29 H 0.138 0.862 30 H 0.082 0.918 31 H 0.102 0.898 32 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 19.787 -4.460 -0.145 20.284 hybrid contribution -0.765 0.813 -0.063 1.118 sum 19.022 -3.647 -0.208 19.370 Atomic orbital electron populations 1.69546 1.07905 1.30427 1.44950 1.26086 0.96364 1.02209 0.94661 0.85589 0.79357 0.77616 0.80656 1.17514 1.18013 1.17244 1.19177 0.80412 0.96078 1.51324 0.90438 1.41703 1.06641 1.07712 1.60858 1.19681 0.88422 0.84591 0.88409 1.90602 1.70149 1.31335 1.57086 1.19872 0.87847 0.84808 0.76744 1.90667 1.70361 1.31897 1.50870 1.45763 1.07578 1.08199 1.72475 1.21275 0.77797 1.00275 0.97324 1.22610 0.98220 1.03010 0.96681 1.22597 0.91637 0.86708 0.99896 1.87922 1.77086 1.39612 1.26949 1.22708 0.91735 1.04005 0.82833 1.22506 0.98172 0.95946 1.02945 0.89864 0.77078 0.74681 0.89832 0.91657 0.90713 0.87111 0.92047 0.86200 0.91849 0.89830 0.88854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.56 13.94 21.77 0.30 -50.26 16 2 C 0.01 0.65 5.51 85.14 0.47 1.12 16 3 Si 0.95 39.11 27.74 68.60 1.90 41.01 16 4 H -0.25 -9.84 7.11 99.48 0.71 -9.13 16 5 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 6 H -0.25 -9.71 6.53 99.48 0.65 -9.06 16 7 C -0.34 -19.70 10.16 84.36 0.86 -18.84 16 8 H 0.08 5.15 7.36 -2.91 -0.02 5.12 16 9 N -0.53 -27.06 5.06 -308.87 -1.56 -28.62 16 10 C 0.40 19.68 7.82 87.08 0.68 20.36 16 11 O -0.60 -32.60 16.03 -3.70 -0.06 -32.66 16 12 C 0.52 20.85 7.84 87.08 0.68 21.53 16 13 O -0.56 -23.18 16.13 -3.50 -0.06 -23.24 16 14 N -0.69 -21.08 5.07 -443.90 -2.25 -23.33 16 15 C 0.14 3.24 2.54 45.11 0.11 3.36 16 16 C -0.17 -3.70 5.72 30.68 0.18 -3.52 16 17 C 0.07 1.21 6.84 72.01 0.49 1.71 16 18 O -0.40 -7.50 10.77 -148.98 -1.60 -9.10 16 19 C 0.06 0.93 6.84 72.01 0.49 1.42 16 20 C -0.16 -2.67 5.61 30.68 0.17 -2.50 16 21 H 0.29 14.85 8.30 -92.71 -0.77 14.08 16 22 H 0.39 18.29 5.22 -92.70 -0.48 17.81 16 23 H 0.42 12.16 8.06 -92.70 -0.75 11.41 16 24 H 0.08 2.13 7.58 -2.39 -0.02 2.11 16 25 H 0.06 1.67 8.14 -2.38 -0.02 1.66 16 26 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -68.50 276.02 0.68 -67.82 By element: Atomic # 1 Polarization: 33.88 SS G_CDS: -0.13 Total: 33.75 kcal Atomic # 6 Polarization: 20.49 SS G_CDS: 4.14 Total: 24.63 kcal Atomic # 7 Polarization: -98.70 SS G_CDS: -3.51 Total: -102.21 kcal Atomic # 8 Polarization: -63.28 SS G_CDS: -1.72 Total: -65.00 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 1.90 Total: 41.01 kcal Total: -68.50 0.68 -67.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036319826.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.240 kcal (2) G-P(sol) polarization free energy of solvation -68.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds