Wall clock time and date at job start Mon Mar 30 2020 03:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08990 * 109.51190 * 2 1 4 4 C 1.53290 * 109.51289 * 239.89357 * 2 1 3 5 5 N 1.47151 * 108.38651 * 187.72511 * 4 2 1 6 6 C 1.34777 * 120.98046 * 230.51419 * 5 4 2 7 7 O 1.21433 * 120.00452 * 8.01920 * 6 5 4 8 8 C 1.48837 * 119.99597 * 188.01042 * 6 5 4 9 9 O 1.21499 * 120.00088 * 6.70942 * 8 6 5 10 10 N 1.34777 * 119.99664 * 186.70791 * 8 6 5 11 11 C 1.36124 * 119.99731 * 180.02562 * 10 8 6 12 12 H 1.08002 * 120.00118 * 359.71843 * 11 10 8 13 13 C 1.39578 * 119.99772 * 180.02562 * 11 10 8 14 14 N 1.31018 * 120.00429 * 359.72172 * 13 11 10 15 15 Si 1.86802 * 119.99938 * 179.72204 * 13 11 10 16 16 H 1.48505 * 109.47031 * 89.99651 * 15 13 11 17 17 H 1.48503 * 109.47187 * 209.99784 * 15 13 11 18 18 H 1.48502 * 109.47350 * 330.00029 * 15 13 11 19 19 C 1.47148 * 118.03195 * 50.78685 * 5 4 2 20 20 C 1.53711 * 108.16371 * 309.15866 * 19 5 4 21 21 O 1.42961 * 109.54959 * 120.12401 * 2 1 3 22 22 H 1.09003 * 109.47087 * 180.10136 * 1 2 3 23 23 H 1.09002 * 109.46981 * 300.10419 * 1 2 3 24 24 H 1.09002 * 109.46989 * 60.10312 * 1 2 3 25 25 H 1.09005 * 109.68233 * 67.99911 * 4 2 1 26 26 H 1.09007 * 109.68403 * 307.45032 * 4 2 1 27 27 H 0.96999 * 119.99980 * 0.02562 * 10 8 6 28 28 H 0.97001 * 120.00321 * 180.02562 * 14 13 11 29 29 H 1.08996 * 109.68568 * 68.94197 * 19 5 4 30 30 H 1.09004 * 109.67907 * 189.49306 * 19 5 4 31 31 H 1.09000 * 109.65913 * 292.57527 * 20 19 5 32 32 H 1.09000 * 109.48441 * 172.39830 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8941 1.0273 0.0000 4 6 2.0421 -0.7248 -1.2499 5 7 3.5014 -0.8747 -1.1344 6 6 4.3188 -0.5021 -2.1391 7 8 3.8711 0.0971 -3.0957 8 6 5.7704 -0.8249 -2.0761 9 8 6.1981 -1.5279 -1.1822 10 7 6.6103 -0.3373 -3.0105 11 6 7.9378 -0.6329 -2.9531 12 1 8.3187 -1.2544 -2.1562 13 6 8.8078 -0.1275 -3.9206 14 7 8.3459 0.6270 -4.8870 15 14 10.6307 -0.5268 -3.8375 16 1 10.9003 -1.7710 -4.6021 17 1 11.4100 0.5932 -4.4238 18 1 11.0311 -0.7200 -2.4206 19 6 4.0413 -1.4493 0.1080 20 6 3.4322 -0.6843 1.2940 21 8 2.0085 -0.6761 1.1652 22 1 -0.3633 -1.0277 0.0018 23 1 -0.3633 0.5155 0.8891 24 1 -0.3633 0.5122 -0.8909 25 1 1.8023 -0.1395 -2.1377 26 1 1.5765 -1.7078 -1.3210 27 1 6.2688 0.2243 -3.7239 28 1 8.9504 0.9779 -5.5596 29 1 3.7737 -2.5040 0.1714 30 1 5.1262 -1.3440 0.1200 31 1 3.8032 0.3406 1.2986 32 1 3.7107 -1.1766 2.2257 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037242546.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:43 Heat of formation + Delta-G solvation = -103.191695 kcal Electronic energy + Delta-G solvation = -17763.203666 eV Core-core repulsion = 14724.530013 eV Total energy + Delta-G solvation = -3038.673653 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.15700 -38.51051 -37.12065 -34.92851 -33.84789 -32.82417 -31.50048 -28.50047 -27.08241 -25.50555 -23.21861 -22.55480 -20.74841 -19.10205 -18.17339 -16.78394 -16.40363 -16.12117 -15.43747 -15.17351 -14.96098 -14.48676 -14.33400 -13.89202 -13.41892 -13.06046 -12.74749 -12.53046 -12.26073 -11.94229 -11.67279 -11.63858 -11.24565 -11.11020 -10.62475 -10.52189 -10.47546 -10.23625 -9.96014 -9.75510 -8.36232 -8.24460 -7.98962 -6.75547 -4.08053 2.34307 3.07215 3.10327 3.14553 3.22347 3.78635 3.97971 4.15973 4.68560 4.80801 5.05553 5.08942 5.12264 5.25299 5.39414 5.52761 5.61956 5.67338 5.76443 5.86661 5.90947 6.03602 6.14766 6.45117 6.80397 7.22253 7.24606 7.59328 7.72224 8.23855 8.50780 8.86931 9.22077 9.75416 10.38755 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.050816 B = 0.005506 C = 0.005101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.876948 B = 5083.994923 C = 5487.879767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.075 3.925 3 H 0.061 0.939 4 C 0.080 3.920 5 N -0.599 5.599 6 C 0.516 3.484 7 O -0.547 6.547 8 C 0.390 3.610 9 O -0.588 6.588 10 N -0.492 5.492 11 C -0.307 4.307 12 H 0.115 0.885 13 C 0.032 3.968 14 N -0.865 5.865 15 Si 0.941 3.059 16 H -0.273 1.273 17 H -0.279 1.279 18 H -0.264 1.264 19 C 0.044 3.956 20 C 0.047 3.953 21 O -0.385 6.385 22 H 0.064 0.936 23 H 0.065 0.935 24 H 0.073 0.927 25 H 0.098 0.902 26 H 0.071 0.929 27 H 0.405 0.595 28 H 0.282 0.718 29 H 0.066 0.934 30 H 0.159 0.841 31 H 0.052 0.948 32 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.288 -0.570 7.498 11.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.016 3.984 3 H 0.079 0.921 4 C -0.043 4.043 5 N -0.334 5.334 6 C 0.303 3.697 7 O -0.424 6.424 8 C 0.176 3.824 9 O -0.479 6.479 10 N -0.124 5.124 11 C -0.437 4.437 12 H 0.132 0.868 13 C -0.175 4.175 14 N -0.503 5.503 15 Si 0.766 3.234 16 H -0.198 1.198 17 H -0.205 1.205 18 H -0.188 1.188 19 C -0.078 4.078 20 C -0.030 4.030 21 O -0.304 6.304 22 H 0.083 0.917 23 H 0.084 0.916 24 H 0.092 0.908 25 H 0.116 0.884 26 H 0.089 0.911 27 H 0.241 0.759 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.175 0.825 31 H 0.070 0.930 32 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -9.283 -0.663 7.485 11.943 hybrid contribution 0.700 0.228 -0.643 0.977 sum -8.584 -0.435 6.842 10.986 Atomic orbital electron populations 1.21719 0.92533 1.03039 1.02611 1.22432 0.95205 0.95436 0.85318 0.92081 1.22301 0.80984 1.01503 0.99494 1.47843 1.05599 1.62920 1.17076 1.20663 0.88726 0.78395 0.81890 1.90672 1.77812 1.40551 1.33383 1.18863 0.85776 0.90089 0.87706 1.90283 1.76687 1.44244 1.36655 1.41600 1.07467 1.40168 1.23213 1.19923 0.81806 1.30036 1.11962 0.86755 1.25627 1.01805 0.95361 0.94721 1.69484 1.37690 1.30295 1.12799 0.85696 0.80145 0.78296 0.79287 1.19804 1.20457 1.18801 1.23577 1.05754 0.96801 0.81674 1.23185 0.80419 1.00310 0.99119 1.87889 1.21774 1.77496 1.43225 0.91655 0.91634 0.90842 0.88370 0.91051 0.75932 0.90754 0.91538 0.82472 0.92951 0.87892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.57 37.16 0.36 -1.06 16 2 C 0.07 1.00 3.40 -26.58 -0.09 0.91 16 3 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 4 C 0.08 1.23 5.94 -3.54 -0.02 1.21 16 5 N -0.60 -11.15 3.01 -172.76 -0.52 -11.67 16 6 C 0.52 11.52 7.73 -11.87 -0.09 11.42 16 7 O -0.55 -13.01 15.96 5.42 0.09 -12.92 16 8 C 0.39 9.66 7.67 -11.87 -0.09 9.57 16 9 O -0.59 -14.90 12.76 5.37 0.07 -14.83 16 10 N -0.49 -12.90 5.24 -11.59 -0.06 -12.96 16 11 C -0.31 -8.21 9.67 -15.15 -0.15 -8.36 16 12 H 0.11 3.10 7.15 -52.49 -0.38 2.72 16 13 C 0.03 0.82 5.51 -17.40 -0.10 0.73 16 14 N -0.87 -22.71 13.03 55.53 0.72 -21.99 16 15 Si 0.94 19.54 29.56 -169.99 -5.02 14.52 16 16 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 17 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 18 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 19 C 0.04 0.74 6.16 -3.32 -0.02 0.72 16 20 C 0.05 0.66 7.00 37.53 0.26 0.92 16 21 O -0.38 -5.55 10.39 -35.23 -0.37 -5.92 16 22 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 24 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.10 1.54 7.07 -51.93 -0.37 1.17 16 26 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.41 10.77 7.37 -40.82 -0.30 10.47 16 28 H 0.28 6.85 8.30 -40.82 -0.34 6.51 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.16 3.05 4.48 -54.10 -0.24 2.81 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 273.42 15.07 4.12 4.12 Total: -1.00 -29.36 273.42 -4.71 -34.07 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -3.80 Total: 11.53 kcal Atomic # 6 Polarization: 15.99 SS G_CDS: 0.06 Total: 16.05 kcal Atomic # 7 Polarization: -46.76 SS G_CDS: 0.14 Total: -46.62 kcal Atomic # 8 Polarization: -33.46 SS G_CDS: -0.21 Total: -33.67 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.02 Total: 14.52 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -29.36 -4.71 -34.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037242546.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.121 kcal (2) G-P(sol) polarization free energy of solvation -29.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds