Wall clock time and date at job start Mon Mar 30 2020 03:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31013 * 1 3 3 Si 1.86793 * 120.00027 * 2 1 4 4 H 1.48505 * 109.47169 * 269.99123 * 3 2 1 5 5 H 1.48497 * 109.47601 * 29.99457 * 3 2 1 6 6 H 1.48504 * 109.47360 * 149.99426 * 3 2 1 7 7 C 1.39583 * 119.99795 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99806 * 180.02562 * 7 2 1 9 9 N 1.36117 * 120.00149 * 0.02562 * 7 2 1 10 10 C 1.34782 * 120.00210 * 180.27540 * 9 7 2 11 11 O 1.21496 * 119.99446 * 359.71547 * 10 9 7 12 12 C 1.48829 * 120.00173 * 179.72031 * 10 9 7 13 13 O 1.21442 * 119.99916 * 6.77841 * 12 10 9 14 14 N 1.34772 * 119.99750 * 186.77411 * 12 10 9 15 15 C 1.46924 * 120.63231 * 8.54340 * 14 12 10 16 16 C 1.53623 * 108.54413 * 126.36772 * 15 14 12 17 17 C 1.53042 * 109.24626 * 54.85349 * 16 15 14 18 18 O 1.42892 * 109.46304 * 178.49211 * 17 16 15 19 19 C 1.53042 * 109.53728 * 298.51606 * 17 16 15 20 20 C 1.46930 * 120.62613 * 188.81648 * 14 12 10 21 21 H 0.97002 * 120.00183 * 0.02562 * 1 2 3 22 22 H 0.96997 * 120.00463 * 359.97438 * 9 7 2 23 23 H 1.08997 * 109.58188 * 246.19573 * 15 14 12 24 24 H 1.08993 * 109.58887 * 6.62261 * 15 14 12 25 25 H 1.08999 * 109.63352 * 294.86378 * 16 15 14 26 26 H 1.09002 * 109.46019 * 174.73802 * 16 15 14 27 27 H 1.09002 * 109.44594 * 58.52521 * 17 16 15 28 28 H 0.96706 * 114.00181 * 300.06839 * 18 17 16 29 29 H 1.09003 * 109.49459 * 301.40845 * 19 17 16 30 30 H 1.08998 * 109.52401 * 181.33319 * 19 17 16 31 31 H 1.08991 * 109.59254 * 353.37793 * 20 14 12 32 32 H 1.09001 * 109.58648 * 113.66187 * 20 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6177 0.0000 4 1 2.4918 2.0463 -1.4001 5 1 1.4416 2.6527 0.6999 6 1 3.5416 1.4402 0.7002 7 6 2.0080 -1.2088 0.0005 8 1 3.0881 -1.2089 0.0010 9 7 1.3274 -2.3876 0.0005 10 6 2.0012 -3.5549 0.0067 11 8 3.2162 -3.5549 0.0070 12 6 1.2571 -4.8438 0.0130 13 8 0.0491 -4.8480 -0.1115 14 7 1.9238 -6.0061 0.1567 15 6 3.3539 -6.0121 0.4939 16 6 3.5590 -6.8909 1.7372 17 6 2.9692 -8.2789 1.4767 18 8 3.1887 -9.1111 2.6174 19 6 1.4661 -8.1558 1.2170 20 6 1.2358 -7.2914 -0.0266 21 1 -0.4850 0.8400 -0.0004 22 1 0.3574 -2.3877 0.0005 23 1 3.9245 -6.4175 -0.3416 24 1 3.6837 -4.9950 0.7052 25 1 3.0584 -6.4376 2.5927 26 1 4.6250 -6.9819 1.9457 27 1 3.4532 -8.7213 0.6060 28 1 4.1215 -9.2338 2.8412 29 1 0.9851 -7.6906 2.0775 30 1 1.0420 -9.1467 1.0550 31 1 0.1678 -7.1186 -0.1589 32 1 1.6356 -7.7978 -0.9052 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037243444.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:55 Heat of formation + Delta-G solvation = -113.414817 kcal Electronic energy + Delta-G solvation = -17697.629266 eV Core-core repulsion = 14658.512305 eV Total energy + Delta-G solvation = -3039.116961 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.05556 -38.23889 -37.13214 -35.64754 -34.27493 -31.68042 -31.18206 -30.85351 -26.22783 -24.71925 -23.30824 -22.27169 -20.39895 -19.00526 -18.14482 -17.35374 -16.55804 -16.21230 -15.19670 -15.01205 -14.60104 -14.30956 -14.26247 -13.87141 -13.47248 -13.26010 -12.96048 -12.32793 -12.12581 -11.81105 -11.64511 -11.38919 -11.24769 -11.08551 -10.59672 -10.50804 -10.46215 -10.24185 -9.89389 -9.69258 -8.38561 -8.28075 -7.94844 -6.73898 -4.06374 2.37494 3.11160 3.11548 3.16714 3.28484 3.99180 4.07290 4.24400 4.66866 4.81672 4.98426 5.12138 5.13652 5.20445 5.37753 5.60550 5.73510 5.75499 5.86429 5.91909 6.03722 6.12421 6.36413 6.55387 6.93518 7.25019 7.55431 7.63137 7.76172 8.27151 8.54765 8.89042 9.24275 9.77658 10.40448 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.046743 B = 0.005453 C = 0.005087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.873411 B = 5133.466067 C = 5502.462860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.032 3.968 3 Si 0.940 3.060 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.307 4.307 8 H 0.114 0.886 9 N -0.492 5.492 10 C 0.390 3.610 11 O -0.587 6.587 12 C 0.516 3.484 13 O -0.547 6.547 14 N -0.597 5.597 15 C 0.073 3.927 16 C -0.166 4.166 17 C 0.103 3.897 18 O -0.571 6.571 19 C -0.124 4.124 20 C 0.111 3.889 21 H 0.282 0.718 22 H 0.405 0.595 23 H 0.058 0.942 24 H 0.159 0.841 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.054 0.946 28 H 0.376 0.624 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.042 -11.448 1.770 12.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.175 4.175 3 Si 0.766 3.234 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.188 1.188 7 C -0.437 4.437 8 H 0.132 0.868 9 N -0.125 5.125 10 C 0.176 3.824 11 O -0.478 6.478 12 C 0.303 3.697 13 O -0.425 6.425 14 N -0.331 5.331 15 C -0.049 4.049 16 C -0.205 4.205 17 C 0.044 3.956 18 O -0.377 6.377 19 C -0.163 4.163 20 C -0.012 4.012 21 H 0.092 0.908 22 H 0.241 0.759 23 H 0.076 0.924 24 H 0.175 0.825 25 H 0.091 0.909 26 H 0.092 0.908 27 H 0.072 0.928 28 H 0.222 0.778 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.115 0.885 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.324 -11.303 1.685 12.219 hybrid contribution 0.422 0.598 -0.030 0.733 sum 4.745 -10.705 1.655 11.826 Atomic orbital electron populations 1.69483 1.06593 1.29555 1.44643 1.25622 0.95632 1.00608 0.95665 0.85698 0.79373 0.79515 0.78847 1.19828 1.20475 1.18827 1.19915 0.94053 0.81811 1.47964 0.86783 1.41598 1.10564 1.04262 1.56040 1.18901 0.87753 0.84227 0.91538 1.90238 1.13034 1.84997 1.59539 1.20620 0.87086 0.85721 0.76278 1.90676 1.14265 1.87535 1.49977 1.47840 1.11169 1.04633 1.69483 1.22987 0.79998 1.06916 0.94970 1.22778 1.01198 0.96184 1.00310 1.21869 0.96412 0.89654 0.87644 1.86501 1.30749 1.70982 1.49426 1.21853 0.94775 1.00477 0.99172 1.21545 0.99784 0.83516 0.96341 0.90772 0.75918 0.92367 0.82468 0.90910 0.90815 0.92773 0.77755 0.90773 0.90401 0.88508 0.91635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.77 13.03 55.53 0.72 -22.05 16 2 C 0.03 0.82 5.51 -17.40 -0.10 0.72 16 3 Si 0.94 19.58 29.56 -169.99 -5.02 14.56 16 4 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 5 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 6 H -0.26 -5.44 7.11 56.52 0.40 -5.03 16 7 C -0.31 -8.22 9.67 -15.15 -0.15 -8.36 16 8 H 0.11 3.09 7.15 -52.48 -0.38 2.71 16 9 N -0.49 -12.90 5.24 -11.59 -0.06 -12.96 16 10 C 0.39 9.61 7.67 -11.87 -0.09 9.52 16 11 O -0.59 -14.79 12.73 5.37 0.07 -14.72 16 12 C 0.52 11.40 7.71 -11.88 -0.09 11.31 16 13 O -0.55 -12.98 15.92 5.42 0.09 -12.90 16 14 N -0.60 -10.72 2.97 -173.25 -0.51 -11.23 16 15 C 0.07 1.17 6.00 -3.49 -0.02 1.15 16 16 C -0.17 -2.17 5.72 -26.39 -0.15 -2.32 16 17 C 0.10 1.23 3.43 -26.69 -0.09 1.14 16 18 O -0.57 -6.62 13.32 -35.23 -0.47 -7.09 16 19 C -0.12 -1.61 5.73 -26.61 -0.15 -1.77 16 20 C 0.11 1.62 6.44 -3.71 -0.02 1.59 16 21 H 0.28 6.87 8.30 -40.82 -0.34 6.53 16 22 H 0.41 10.79 7.37 -40.82 -0.30 10.49 16 23 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.16 3.05 4.31 -54.91 -0.24 2.82 16 25 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 26 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.38 2.70 9.08 45.56 0.41 3.12 16 29 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.10 1.50 7.01 -51.93 -0.36 1.14 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 272.17 15.07 4.10 4.10 Total: -1.00 -30.00 272.17 -4.91 -34.91 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -2.96 Total: 14.39 kcal Atomic # 6 Polarization: 13.86 SS G_CDS: -0.86 Total: 12.99 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: 0.15 Total: -46.24 kcal Atomic # 8 Polarization: -34.39 SS G_CDS: -0.31 Total: -34.71 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.56 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.00 -4.91 -34.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037243444.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.505 kcal (2) G-P(sol) polarization free energy of solvation -30.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds