Wall clock time and date at job start Mon Mar 30 2020 03:30:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31013 * 1 3 3 Si 1.86793 * 120.00027 * 2 1 4 4 H 1.48505 * 109.47169 * 269.99123 * 3 2 1 5 5 H 1.48497 * 109.47601 * 29.99457 * 3 2 1 6 6 H 1.48504 * 109.47360 * 149.99426 * 3 2 1 7 7 C 1.39583 * 119.99795 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99806 * 180.02562 * 7 2 1 9 9 N 1.36117 * 120.00149 * 0.02562 * 7 2 1 10 10 C 1.34782 * 120.00210 * 180.27540 * 9 7 2 11 11 O 1.21496 * 119.99446 * 359.71547 * 10 9 7 12 12 C 1.48829 * 120.00173 * 179.72031 * 10 9 7 13 13 O 1.21442 * 119.99916 * 6.77841 * 12 10 9 14 14 N 1.34772 * 119.99750 * 186.77411 * 12 10 9 15 15 C 1.46924 * 120.63231 * 8.54340 * 14 12 10 16 16 C 1.53623 * 108.54413 * 126.36772 * 15 14 12 17 17 C 1.53042 * 109.24626 * 54.85349 * 16 15 14 18 18 O 1.42892 * 109.46304 * 178.49211 * 17 16 15 19 19 C 1.53042 * 109.53728 * 298.51606 * 17 16 15 20 20 C 1.46930 * 120.62613 * 188.81648 * 14 12 10 21 21 H 0.97002 * 120.00183 * 0.02562 * 1 2 3 22 22 H 0.96997 * 120.00463 * 359.97438 * 9 7 2 23 23 H 1.08997 * 109.58188 * 246.19573 * 15 14 12 24 24 H 1.08993 * 109.58887 * 6.62261 * 15 14 12 25 25 H 1.08999 * 109.63352 * 294.86378 * 16 15 14 26 26 H 1.09002 * 109.46019 * 174.73802 * 16 15 14 27 27 H 1.09002 * 109.44594 * 58.52521 * 17 16 15 28 28 H 0.96706 * 114.00181 * 300.06839 * 18 17 16 29 29 H 1.09003 * 109.49459 * 301.40845 * 19 17 16 30 30 H 1.08998 * 109.52401 * 181.33319 * 19 17 16 31 31 H 1.08991 * 109.59254 * 353.37793 * 20 14 12 32 32 H 1.09001 * 109.58648 * 113.66187 * 20 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6177 0.0000 4 1 2.4918 2.0463 -1.4001 5 1 1.4416 2.6527 0.6999 6 1 3.5416 1.4402 0.7002 7 6 2.0080 -1.2088 0.0005 8 1 3.0881 -1.2089 0.0010 9 7 1.3274 -2.3876 0.0005 10 6 2.0012 -3.5549 0.0067 11 8 3.2162 -3.5549 0.0070 12 6 1.2571 -4.8438 0.0130 13 8 0.0491 -4.8480 -0.1115 14 7 1.9238 -6.0061 0.1567 15 6 3.3539 -6.0121 0.4939 16 6 3.5590 -6.8909 1.7372 17 6 2.9692 -8.2789 1.4767 18 8 3.1887 -9.1111 2.6174 19 6 1.4661 -8.1558 1.2170 20 6 1.2358 -7.2914 -0.0266 21 1 -0.4850 0.8400 -0.0004 22 1 0.3574 -2.3877 0.0005 23 1 3.9245 -6.4175 -0.3416 24 1 3.6837 -4.9950 0.7052 25 1 3.0584 -6.4376 2.5927 26 1 4.6250 -6.9819 1.9457 27 1 3.4532 -8.7213 0.6060 28 1 4.1215 -9.2338 2.8412 29 1 0.9851 -7.6906 2.0775 30 1 1.0420 -9.1467 1.0550 31 1 0.1678 -7.1186 -0.1589 32 1 1.6356 -7.7978 -0.9052 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037243444.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:55 Heat of formation + Delta-G solvation = -137.946950 kcal Electronic energy + Delta-G solvation = -17698.693059 eV Core-core repulsion = 14658.512305 eV Total energy + Delta-G solvation = -3040.180754 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.68398 -39.67801 -38.80170 -37.00371 -36.09676 -33.54275 -32.55744 -32.03840 -28.06811 -26.26240 -24.55360 -23.77389 -21.74456 -20.71404 -19.93885 -18.40989 -18.17122 -17.84262 -16.95548 -16.73734 -15.94758 -15.76243 -15.54589 -15.23806 -15.04879 -14.87890 -14.39075 -13.89228 -13.67371 -13.28574 -12.97333 -12.73925 -12.61505 -12.51744 -12.28046 -12.09776 -12.05792 -11.65680 -11.44794 -10.87653 -10.29605 -9.81567 -9.73163 -8.66661 -6.11349 0.56226 1.41540 1.47556 1.55933 1.72623 2.27048 2.32784 3.05403 3.13141 3.26804 3.72210 3.86047 3.93753 4.06478 4.18690 4.27291 4.45670 4.69145 4.71322 4.85211 4.92292 5.05599 5.10454 5.26078 5.29443 5.51644 5.67672 6.12507 6.33282 6.76716 6.90488 6.95469 7.26640 7.78821 8.48976 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.046743 B = 0.005453 C = 0.005087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.873411 B = 5133.466067 C = 5502.462860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C -0.005 4.005 3 Si 1.011 2.989 4 H -0.265 1.265 5 H -0.269 1.269 6 H -0.262 1.262 7 C -0.343 4.343 8 H 0.103 0.897 9 N -0.509 5.509 10 C 0.389 3.611 11 O -0.596 6.596 12 C 0.514 3.486 13 O -0.571 6.571 14 N -0.586 5.586 15 C 0.069 3.931 16 C -0.158 4.158 17 C 0.110 3.890 18 O -0.582 6.582 19 C -0.122 4.122 20 C 0.108 3.892 21 H 0.289 0.711 22 H 0.399 0.601 23 H 0.082 0.918 24 H 0.125 0.875 25 H 0.049 0.951 26 H 0.103 0.897 27 H 0.080 0.920 28 H 0.396 0.604 29 H 0.051 0.949 30 H 0.101 0.899 31 H 0.084 0.916 32 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.366 -12.798 1.736 14.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.209 4.209 3 Si 0.832 3.168 4 H -0.190 1.190 5 H -0.193 1.193 6 H -0.186 1.186 7 C -0.473 4.473 8 H 0.121 0.879 9 N -0.141 5.141 10 C 0.174 3.826 11 O -0.487 6.487 12 C 0.299 3.701 13 O -0.451 6.451 14 N -0.319 5.319 15 C -0.052 4.052 16 C -0.196 4.196 17 C 0.051 3.949 18 O -0.391 6.391 19 C -0.160 4.160 20 C -0.014 4.014 21 H 0.099 0.901 22 H 0.234 0.766 23 H 0.100 0.900 24 H 0.142 0.858 25 H 0.068 0.932 26 H 0.122 0.878 27 H 0.098 0.902 28 H 0.246 0.754 29 H 0.070 0.930 30 H 0.120 0.880 31 H 0.102 0.898 32 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.691 -12.705 1.665 14.021 hybrid contribution 0.071 0.840 0.008 0.843 sum 5.763 -11.866 1.672 13.297 Atomic orbital electron populations 1.69557 1.07950 1.30864 1.45023 1.26570 0.96464 1.03589 0.94306 0.84671 0.78033 0.74914 0.79168 1.18996 1.19316 1.18558 1.20023 0.93816 0.82883 1.50561 0.87889 1.41707 1.10219 1.04873 1.57338 1.19511 0.87937 0.85031 0.90082 1.90264 1.13455 1.85773 1.59162 1.20186 0.86726 0.86099 0.77059 1.90660 1.14926 1.87869 1.51677 1.47984 1.12040 1.04622 1.67239 1.22937 0.78877 1.05951 0.97405 1.22714 1.03053 0.96278 0.97558 1.21762 0.95406 0.88909 0.88809 1.86463 1.32931 1.70461 1.49236 1.21817 0.96005 1.00911 0.97255 1.21824 0.98993 0.81933 0.98617 0.90095 0.76633 0.89969 0.85774 0.93163 0.87831 0.90215 0.75378 0.93010 0.88020 0.89792 0.88420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.02 13.03 21.76 0.28 -47.74 16 2 C 0.00 -0.25 5.51 85.14 0.47 0.22 16 3 Si 1.01 40.14 29.56 68.60 2.03 42.17 16 4 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 5 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 6 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 7 C -0.34 -18.97 9.67 84.35 0.82 -18.15 16 8 H 0.10 5.78 7.15 -2.91 -0.02 5.75 16 9 N -0.51 -27.76 5.24 -308.87 -1.62 -29.38 16 10 C 0.39 19.74 7.67 87.08 0.67 20.41 16 11 O -0.60 -30.71 12.73 -3.70 -0.05 -30.76 16 12 C 0.51 23.07 7.71 87.08 0.67 23.74 16 13 O -0.57 -27.77 15.92 -3.53 -0.06 -27.83 16 14 N -0.59 -20.52 2.97 -820.37 -2.43 -22.95 16 15 C 0.07 2.12 6.00 86.51 0.52 2.64 16 16 C -0.16 -3.73 5.72 30.82 0.18 -3.56 16 17 C 0.11 2.23 3.43 30.62 0.10 2.34 16 18 O -0.58 -11.36 13.32 -148.98 -1.98 -13.35 16 19 C -0.12 -2.84 5.73 30.67 0.18 -2.67 16 20 C 0.11 2.91 6.44 86.36 0.56 3.47 16 21 H 0.29 14.17 8.30 -92.71 -0.77 13.40 16 22 H 0.40 22.29 7.37 -92.71 -0.68 21.60 16 23 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 24 H 0.13 4.80 4.31 -49.55 -0.21 4.59 16 25 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.40 4.10 9.08 -74.05 -0.67 3.42 16 29 H 0.05 1.44 8.14 -2.39 -0.02 1.43 16 30 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.08 2.53 7.01 -2.39 -0.02 2.51 16 32 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -66.29 272.17 -0.06 -66.35 By element: Atomic # 1 Polarization: 35.44 SS G_CDS: -0.39 Total: 35.04 kcal Atomic # 6 Polarization: 24.28 SS G_CDS: 4.16 Total: 28.44 kcal Atomic # 7 Polarization: -96.30 SS G_CDS: -3.77 Total: -100.07 kcal Atomic # 8 Polarization: -69.85 SS G_CDS: -2.09 Total: -71.94 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 2.03 Total: 42.17 kcal Total: -66.29 -0.06 -66.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037243444.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.592 kcal (2) G-P(sol) polarization free energy of solvation -66.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds