Wall clock time and date at job start Mon Mar 30 2020 03:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31017 * 1 3 3 Si 1.86809 * 119.99859 * 2 1 4 4 H 1.48500 * 109.46831 * 270.00265 * 3 2 1 5 5 H 1.48502 * 109.46671 * 29.99917 * 3 2 1 6 6 H 1.48500 * 109.46985 * 150.00027 * 3 2 1 7 7 C 1.39581 * 120.00153 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99852 * 180.02562 * 7 2 1 9 9 N 1.36119 * 120.00344 * 359.97438 * 7 2 1 10 10 C 1.34774 * 120.00497 * 180.02562 * 9 7 2 11 11 O 1.21499 * 119.99814 * 359.97438 * 10 9 7 12 12 C 1.48828 * 120.00165 * 180.02562 * 10 9 7 13 13 O 1.21440 * 119.99807 * 359.97438 * 12 10 9 14 14 N 1.34779 * 120.00006 * 179.97438 * 12 10 9 15 15 C 1.46493 * 120.00037 * 179.97438 * 14 12 10 16 16 C 1.52997 * 109.47316 * 180.02562 * 15 14 12 17 17 H 1.08999 * 110.33077 * 57.74767 * 16 15 14 18 18 C 1.54477 * 110.37308 * 180.02562 * 16 15 14 19 19 C 1.54507 * 104.06510 * 142.80822 * 18 16 15 20 20 C 1.54483 * 104.06211 * 359.97438 * 19 18 16 21 21 O 1.44428 * 104.89902 * 335.96812 * 20 19 18 22 22 H 0.96997 * 120.00219 * 0.02562 * 1 2 3 23 23 H 0.97009 * 119.99068 * 0.02562 * 9 7 2 24 24 H 0.96998 * 119.99809 * 0.02562 * 14 12 10 25 25 H 1.09000 * 109.47057 * 60.00168 * 15 14 12 26 26 H 1.09008 * 109.47505 * 300.00671 * 15 14 12 27 27 H 1.09000 * 110.51486 * 24.16264 * 18 16 15 28 28 H 1.09000 * 110.62726 * 261.50882 * 18 16 15 29 29 H 1.09005 * 110.51421 * 241.35469 * 19 18 16 30 30 H 1.09004 * 110.63217 * 118.69765 * 19 18 16 31 31 H 1.09002 * 110.37322 * 94.85326 * 20 19 18 32 32 H 1.08999 * 110.37312 * 217.08002 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2442 1.6178 0.0000 4 1 2.4916 2.0465 -1.4001 5 1 1.4415 2.6527 0.7000 6 1 3.5417 1.4403 0.7000 7 6 2.0081 -1.2088 -0.0005 8 1 3.0882 -1.2087 -0.0001 9 7 1.3276 -2.3877 -0.0005 10 6 2.0015 -3.5549 -0.0005 11 8 3.2165 -3.5548 -0.0010 12 6 1.2574 -4.8438 -0.0011 13 8 0.0430 -4.8438 -0.0011 14 7 1.9313 -6.0110 -0.0016 15 6 1.1989 -7.2797 -0.0016 16 6 2.1931 -8.4426 -0.0016 17 1 2.8538 -8.3760 0.8627 18 6 1.4419 -9.7924 -0.0023 19 6 2.3028 -10.7008 -0.9082 20 6 3.4721 -9.7922 -1.3483 21 8 2.9624 -8.4463 -1.2274 22 1 -0.4850 0.8400 -0.0004 23 1 0.3575 -2.3876 -0.0005 24 1 2.9013 -6.0109 -0.0013 25 1 0.5719 -7.3372 -0.8914 26 1 0.5724 -7.3376 0.8886 27 1 0.4424 -9.6731 -0.4205 28 1 1.3864 -10.2014 1.0065 29 1 1.7290 -11.0306 -1.7744 30 1 2.6753 -11.5590 -0.3488 31 1 4.3304 -9.9333 -0.6914 32 1 3.7476 -10.0022 -2.3818 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037243519.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:51 Heat of formation + Delta-G solvation = -124.858556 kcal Electronic energy + Delta-G solvation = -17009.315713 eV Core-core repulsion = 13969.702514 eV Total energy + Delta-G solvation = -3039.613199 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.84311 -39.10670 -37.13120 -34.71989 -33.91868 -32.31745 -31.37834 -30.18033 -26.35471 -25.20575 -22.80401 -21.72144 -21.28974 -19.30541 -18.29182 -17.15090 -16.69255 -15.84436 -15.68644 -15.67746 -14.84566 -14.66532 -14.17171 -13.87733 -13.83884 -13.10586 -12.77295 -12.31554 -12.13354 -11.98736 -11.74624 -11.51222 -11.42068 -11.16667 -10.87985 -10.50876 -10.39980 -10.30437 -9.94346 -9.68405 -8.70609 -8.23374 -8.18578 -6.63420 -3.95681 2.49602 3.17559 3.18201 3.23809 3.40085 3.72586 4.09586 4.32433 4.33343 4.51754 4.67220 4.88008 5.00341 5.05564 5.22101 5.25993 5.31926 5.45321 5.55511 5.63838 5.72886 5.76915 5.91905 6.11457 6.63101 6.81985 7.34581 7.73563 7.92949 8.37132 8.66752 9.00107 9.35992 9.89414 10.51625 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.063037 B = 0.004238 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.075206 B = 6605.875778 C = 6933.453002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.030 3.970 3 Si 0.939 3.061 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.306 4.306 8 H 0.112 0.888 9 N -0.500 5.500 10 C 0.396 3.604 11 O -0.596 6.596 12 C 0.513 3.487 13 O -0.549 6.549 14 N -0.710 5.710 15 C 0.128 3.872 16 C 0.061 3.939 17 H 0.078 0.922 18 C -0.147 4.147 19 C -0.155 4.155 20 C 0.042 3.958 21 O -0.364 6.364 22 H 0.280 0.720 23 H 0.405 0.595 24 H 0.413 0.587 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.626 -17.406 0.118 17.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.176 4.176 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.436 4.436 8 H 0.130 0.870 9 N -0.135 5.135 10 C 0.180 3.820 11 O -0.485 6.485 12 C 0.298 3.702 13 O -0.426 6.426 14 N -0.365 5.365 15 C 0.004 3.996 16 C 0.003 3.997 17 H 0.096 0.904 18 C -0.185 4.185 19 C -0.192 4.192 20 C -0.035 4.035 21 O -0.283 6.283 22 H 0.090 0.910 23 H 0.240 0.760 24 H 0.249 0.751 25 H 0.092 0.908 26 H 0.098 0.902 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.078 0.922 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.405 -17.075 -0.025 17.244 hybrid contribution 0.171 0.485 0.109 0.526 sum 2.576 -16.591 0.084 16.790 Atomic orbital electron populations 1.69487 1.06509 1.29293 1.45534 1.25580 0.95624 1.00437 0.95970 0.85722 0.79360 0.79696 0.78771 1.19912 1.20550 1.18909 1.19885 0.93984 0.81905 1.47859 0.86989 1.41557 1.10476 1.04198 1.57236 1.18953 0.87814 0.84218 0.91004 1.90582 1.12901 1.86627 1.58362 1.20683 0.87465 0.85914 0.76152 1.90681 1.14062 1.88152 1.49748 1.45564 1.11341 1.04337 1.75224 1.21391 0.93701 0.81551 1.02990 1.23344 0.92854 0.94758 0.88705 0.90390 1.22904 1.00313 0.94356 1.00956 1.22937 0.97356 0.98779 1.00162 1.23404 0.95847 0.82092 1.02111 1.89311 1.68775 1.28870 1.41312 0.90963 0.76001 0.75092 0.90769 0.90183 0.90056 0.90107 0.90592 0.90529 0.92232 0.89080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.65 13.03 55.53 0.72 -22.93 16 2 C 0.03 0.81 5.51 -17.40 -0.10 0.71 16 3 Si 0.94 20.36 29.56 -169.99 -5.02 15.33 16 4 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 6 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 7 C -0.31 -8.59 9.67 -15.15 -0.15 -8.74 16 8 H 0.11 3.21 7.15 -52.48 -0.38 2.83 16 9 N -0.50 -13.72 5.25 -11.59 -0.06 -13.78 16 10 C 0.40 10.31 7.82 -11.88 -0.09 10.22 16 11 O -0.60 -16.50 16.03 5.37 0.09 -16.42 16 12 C 0.51 11.62 7.87 -11.88 -0.09 11.52 16 13 O -0.55 -13.23 16.47 5.42 0.09 -13.14 16 14 N -0.71 -12.94 5.51 -60.93 -0.34 -13.28 16 15 C 0.13 1.82 5.29 -4.05 -0.02 1.80 16 16 C 0.06 0.69 3.33 -25.96 -0.09 0.61 16 17 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 18 C -0.15 -1.23 6.63 -25.17 -0.17 -1.39 16 19 C -0.15 -1.14 7.09 -25.16 -0.18 -1.32 16 20 C 0.04 0.38 7.62 37.94 0.29 0.67 16 21 O -0.36 -4.77 11.33 -35.23 -0.40 -5.17 16 22 H 0.28 7.04 8.30 -40.82 -0.34 6.70 16 23 H 0.40 11.14 7.35 -40.82 -0.30 10.84 16 24 H 0.41 7.37 7.93 -40.82 -0.32 7.04 16 25 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.08 1.07 8.14 -51.92 -0.42 0.65 16 27 H 0.08 0.67 7.87 -51.93 -0.41 0.27 16 28 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 283.06 15.07 4.27 4.27 Total: -1.00 -32.08 283.06 -5.17 -37.25 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -3.92 Total: 13.77 kcal Atomic # 6 Polarization: 14.68 SS G_CDS: -0.59 Total: 14.09 kcal Atomic # 7 Polarization: -50.31 SS G_CDS: 0.33 Total: -49.98 kcal Atomic # 8 Polarization: -34.50 SS G_CDS: -0.22 Total: -34.72 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -32.08 -5.17 -37.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037243519.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.607 kcal (2) G-P(sol) polarization free energy of solvation -32.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds