Wall clock time and date at job start Mon Mar 30 2020 03:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31017 * 1 3 3 Si 1.86809 * 119.99859 * 2 1 4 4 H 1.48500 * 109.46831 * 270.00265 * 3 2 1 5 5 H 1.48502 * 109.46671 * 29.99917 * 3 2 1 6 6 H 1.48500 * 109.46985 * 150.00027 * 3 2 1 7 7 C 1.39581 * 120.00153 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99852 * 180.02562 * 7 2 1 9 9 N 1.36119 * 120.00344 * 359.97438 * 7 2 1 10 10 C 1.34774 * 120.00497 * 180.02562 * 9 7 2 11 11 O 1.21499 * 119.99814 * 359.97438 * 10 9 7 12 12 C 1.48828 * 120.00165 * 180.02562 * 10 9 7 13 13 O 1.21440 * 119.99807 * 359.97438 * 12 10 9 14 14 N 1.34779 * 120.00006 * 179.97438 * 12 10 9 15 15 C 1.46493 * 120.00037 * 179.97438 * 14 12 10 16 16 C 1.52997 * 109.47316 * 180.02562 * 15 14 12 17 17 H 1.08999 * 110.33077 * 57.74767 * 16 15 14 18 18 C 1.54477 * 110.37308 * 180.02562 * 16 15 14 19 19 C 1.54507 * 104.06510 * 142.80822 * 18 16 15 20 20 C 1.54483 * 104.06211 * 359.97438 * 19 18 16 21 21 O 1.44428 * 104.89902 * 335.96812 * 20 19 18 22 22 H 0.96997 * 120.00219 * 0.02562 * 1 2 3 23 23 H 0.97009 * 119.99068 * 0.02562 * 9 7 2 24 24 H 0.96998 * 119.99809 * 0.02562 * 14 12 10 25 25 H 1.09000 * 109.47057 * 60.00168 * 15 14 12 26 26 H 1.09008 * 109.47505 * 300.00671 * 15 14 12 27 27 H 1.09000 * 110.51486 * 24.16264 * 18 16 15 28 28 H 1.09000 * 110.62726 * 261.50882 * 18 16 15 29 29 H 1.09005 * 110.51421 * 241.35469 * 19 18 16 30 30 H 1.09004 * 110.63217 * 118.69765 * 19 18 16 31 31 H 1.09002 * 110.37322 * 94.85326 * 20 19 18 32 32 H 1.08999 * 110.37312 * 217.08002 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2442 1.6178 0.0000 4 1 2.4916 2.0465 -1.4001 5 1 1.4415 2.6527 0.7000 6 1 3.5417 1.4403 0.7000 7 6 2.0081 -1.2088 -0.0005 8 1 3.0882 -1.2087 -0.0001 9 7 1.3276 -2.3877 -0.0005 10 6 2.0015 -3.5549 -0.0005 11 8 3.2165 -3.5548 -0.0010 12 6 1.2574 -4.8438 -0.0011 13 8 0.0430 -4.8438 -0.0011 14 7 1.9313 -6.0110 -0.0016 15 6 1.1989 -7.2797 -0.0016 16 6 2.1931 -8.4426 -0.0016 17 1 2.8538 -8.3760 0.8627 18 6 1.4419 -9.7924 -0.0023 19 6 2.3028 -10.7008 -0.9082 20 6 3.4721 -9.7922 -1.3483 21 8 2.9624 -8.4463 -1.2274 22 1 -0.4850 0.8400 -0.0004 23 1 0.3575 -2.3876 -0.0005 24 1 2.9013 -6.0109 -0.0013 25 1 0.5719 -7.3372 -0.8914 26 1 0.5724 -7.3376 0.8886 27 1 0.4424 -9.6731 -0.4205 28 1 1.3864 -10.2014 1.0065 29 1 1.7290 -11.0306 -1.7744 30 1 2.6753 -11.5590 -0.3488 31 1 4.3304 -9.9333 -0.6914 32 1 3.7476 -10.0022 -2.3818 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037243519.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:50 Heat of formation + Delta-G solvation = -150.595609 kcal Electronic energy + Delta-G solvation = -17010.431756 eV Core-core repulsion = 13969.702514 eV Total energy + Delta-G solvation = -3040.729241 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.35868 -40.33035 -39.07351 -36.54910 -35.67920 -33.46920 -33.07151 -31.26809 -28.07164 -26.64798 -24.31868 -22.77874 -22.15907 -21.05480 -20.35720 -18.89966 -17.78344 -17.42902 -16.92802 -16.68786 -16.62447 -16.26726 -15.77920 -15.56642 -14.80246 -14.64588 -14.56062 -13.67588 -13.65794 -13.22158 -12.96705 -12.66047 -12.58779 -12.47552 -12.18661 -12.13504 -12.09552 -11.67094 -11.48739 -10.77410 -10.29193 -10.25857 -10.24015 -8.66305 -6.11454 0.58738 1.41258 1.47489 1.56267 1.80756 2.29461 2.36460 2.86785 3.14857 3.29817 3.56289 3.77038 3.98603 4.02962 4.16388 4.17475 4.45884 4.54715 4.60583 4.84393 4.90286 4.98904 5.10435 5.18536 5.24769 5.28128 5.67282 5.87624 6.14380 6.37185 6.79836 6.99774 7.27034 7.79370 8.49645 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.063037 B = 0.004238 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.075206 B = 6605.875778 C = 6933.453002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C -0.004 4.004 3 Si 1.012 2.988 4 H -0.265 1.265 5 H -0.266 1.266 6 H -0.263 1.263 7 C -0.347 4.347 8 H 0.099 0.901 9 N -0.510 5.510 10 C 0.388 3.612 11 O -0.618 6.618 12 C 0.518 3.482 13 O -0.567 6.567 14 N -0.692 5.692 15 C 0.122 3.878 16 C 0.063 3.937 17 H 0.089 0.911 18 C -0.143 4.143 19 C -0.148 4.148 20 C 0.033 3.967 21 O -0.400 6.400 22 H 0.289 0.711 23 H 0.401 0.599 24 H 0.416 0.584 25 H 0.067 0.933 26 H 0.094 0.906 27 H 0.080 0.920 28 H 0.103 0.897 29 H 0.079 0.921 30 H 0.099 0.901 31 H 0.070 0.930 32 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.943 -18.325 0.427 18.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.209 4.209 3 Si 0.832 3.168 4 H -0.190 1.190 5 H -0.190 1.190 6 H -0.188 1.188 7 C -0.477 4.477 8 H 0.116 0.884 9 N -0.144 5.144 10 C 0.173 3.827 11 O -0.508 6.508 12 C 0.301 3.699 13 O -0.447 6.447 14 N -0.344 5.344 15 C 0.000 4.000 16 C 0.005 3.995 17 H 0.107 0.893 18 C -0.181 4.181 19 C -0.186 4.186 20 C -0.043 4.043 21 O -0.320 6.320 22 H 0.100 0.900 23 H 0.236 0.764 24 H 0.252 0.748 25 H 0.085 0.915 26 H 0.112 0.888 27 H 0.099 0.901 28 H 0.121 0.879 29 H 0.098 0.902 30 H 0.117 0.883 31 H 0.089 0.911 32 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.721 -18.046 0.282 18.252 hybrid contribution 0.079 0.665 -0.006 0.670 sum 2.800 -17.381 0.276 17.607 Atomic orbital electron populations 1.69550 1.07844 1.30868 1.45060 1.26563 0.96521 1.03491 0.94295 0.84678 0.78000 0.74912 0.79203 1.18966 1.18987 1.18757 1.20001 0.93721 0.83096 1.50854 0.88353 1.41650 1.10232 1.04758 1.57719 1.19610 0.87866 0.85273 0.89927 1.90545 1.13881 1.87290 1.59041 1.20064 0.87004 0.85944 0.76877 1.90670 1.14439 1.88331 1.51217 1.45579 1.11581 1.04503 1.72734 1.21723 0.94519 0.80525 1.03276 1.23396 0.92645 0.94785 0.88669 0.89325 1.22925 0.99945 0.92669 1.02571 1.22935 0.96427 0.98840 1.00365 1.23644 0.96865 0.80763 1.03014 1.89272 1.69342 1.31348 1.42038 0.90042 0.76441 0.74779 0.91469 0.88820 0.90147 0.87898 0.90245 0.88256 0.91141 0.88482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.75 13.03 21.76 0.28 -48.46 16 2 C 0.00 -0.23 5.51 85.14 0.47 0.24 16 3 Si 1.01 41.26 29.56 68.60 2.03 43.29 16 4 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 5 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 6 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 7 C -0.35 -19.95 9.67 84.35 0.82 -19.13 16 8 H 0.10 5.80 7.15 -2.91 -0.02 5.78 16 9 N -0.51 -28.77 5.25 -308.88 -1.62 -30.39 16 10 C 0.39 20.71 7.82 87.08 0.68 21.39 16 11 O -0.62 -34.94 16.03 -3.71 -0.06 -35.00 16 12 C 0.52 23.68 7.87 87.08 0.69 24.37 16 13 O -0.57 -27.55 16.47 -3.53 -0.06 -27.61 16 14 N -0.69 -24.99 5.51 -465.02 -2.56 -27.56 16 15 C 0.12 3.36 5.29 86.38 0.46 3.81 16 16 C 0.06 1.30 3.33 31.10 0.10 1.41 16 17 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 18 C -0.14 -1.99 6.63 31.61 0.21 -1.78 16 19 C -0.15 -1.75 7.09 31.61 0.22 -1.53 16 20 C 0.03 0.54 7.62 72.49 0.55 1.09 16 21 O -0.40 -10.02 11.33 -148.98 -1.69 -11.71 16 22 H 0.29 14.37 8.30 -92.71 -0.77 13.60 16 23 H 0.40 22.78 7.35 -92.70 -0.68 22.10 16 24 H 0.42 14.73 7.93 -92.71 -0.74 13.99 16 25 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.09 2.35 8.14 -2.38 -0.02 2.33 16 27 H 0.08 1.15 7.87 -2.39 -0.02 1.13 16 28 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 30 H 0.10 0.75 8.14 -2.38 -0.02 0.73 16 31 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -69.44 283.06 0.26 -69.18 By element: Atomic # 1 Polarization: 38.66 SS G_CDS: -0.26 Total: 38.40 kcal Atomic # 6 Polarization: 25.67 SS G_CDS: 4.20 Total: 29.87 kcal Atomic # 7 Polarization: -102.51 SS G_CDS: -3.90 Total: -106.41 kcal Atomic # 8 Polarization: -72.52 SS G_CDS: -1.81 Total: -74.33 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.29 kcal Total: -69.44 0.26 -69.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037243519.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.417 kcal (2) G-P(sol) polarization free energy of solvation -69.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds