Wall clock time and date at job start Mon Mar 30 2020 03:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31012 * 1 3 3 Si 1.86797 * 120.00079 * 2 1 4 4 H 1.48500 * 109.47228 * 269.99925 * 3 2 1 5 5 H 1.48497 * 109.46989 * 30.00149 * 3 2 1 6 6 H 1.48501 * 109.47254 * 150.00040 * 3 2 1 7 7 C 1.39597 * 120.00039 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99788 * 179.97438 * 7 2 1 9 9 N 1.36117 * 119.99453 * 0.02562 * 7 2 1 10 10 C 1.34784 * 119.99320 * 179.97438 * 9 7 2 11 11 O 1.21493 * 120.00173 * 0.02562 * 10 9 7 12 12 C 1.48832 * 119.99557 * 180.02562 * 10 9 7 13 13 O 1.21442 * 120.00249 * 359.97438 * 12 10 9 14 14 N 1.34777 * 119.99880 * 179.97438 * 12 10 9 15 15 C 1.46498 * 120.00260 * 179.97438 * 14 12 10 16 16 C 1.52994 * 109.47363 * 180.02562 * 15 14 12 17 17 H 1.09000 * 110.27451 * 304.36261 * 16 15 14 18 18 C 1.54947 * 110.39537 * 182.21509 * 16 15 14 19 19 C 1.55457 * 100.98961 * 204.64739 * 18 16 15 20 20 C 1.54382 * 102.18540 * 34.03935 * 19 18 16 21 21 O 1.43233 * 107.66464 * 338.74226 * 20 19 18 22 22 H 0.96990 * 120.00057 * 359.97438 * 1 2 3 23 23 H 0.96995 * 120.00489 * 0.02562 * 9 7 2 24 24 H 0.97005 * 119.99974 * 0.02562 * 14 12 10 25 25 H 1.09001 * 109.46995 * 59.99800 * 15 14 12 26 26 H 1.09009 * 109.47049 * 300.00193 * 15 14 12 27 27 H 1.08999 * 111.12360 * 322.51237 * 18 16 15 28 28 H 1.09001 * 111.12353 * 86.63542 * 18 16 15 29 29 H 1.08994 * 110.83103 * 275.89000 * 19 18 16 30 30 H 1.08999 * 110.92148 * 152.22878 * 19 18 16 31 31 H 1.09002 * 109.83024 * 219.18066 * 20 19 18 32 32 H 1.08996 * 109.83002 * 98.29659 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6177 0.0000 4 1 2.4917 2.0464 -1.4001 5 1 1.4416 2.6526 0.7001 6 1 3.5417 1.4401 0.7000 7 6 2.0081 -1.2089 0.0005 8 1 3.0881 -1.2089 0.0001 9 7 1.3274 -2.3877 0.0005 10 6 2.0014 -3.5549 0.0005 11 8 3.2163 -3.5549 0.0010 12 6 1.2572 -4.8438 0.0000 13 8 0.0427 -4.8438 0.0000 14 7 1.9310 -6.0110 -0.0006 15 6 1.1985 -7.2798 -0.0006 16 6 2.1927 -8.4427 -0.0006 17 1 2.8768 -8.3547 -0.8446 18 6 1.4405 -9.7961 -0.0567 19 6 2.4899 -10.7453 0.5872 20 6 3.1618 -9.8278 1.6313 21 8 2.9258 -8.4720 1.2345 22 1 -0.4850 0.8400 0.0004 23 1 0.3575 -2.3877 -0.0002 24 1 2.9011 -6.0111 -0.0002 25 1 0.5715 -7.3373 -0.8903 26 1 0.5722 -7.3377 0.8897 27 1 0.5267 -9.7626 0.5365 28 1 1.2275 -10.0848 -1.0860 29 1 3.2132 -11.0836 -0.1546 30 1 2.0035 -11.5924 1.0709 31 1 4.2337 -10.0235 1.6602 32 1 2.7269 -10.0063 2.6147 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037243522.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:53 Heat of formation + Delta-G solvation = -125.088738 kcal Electronic energy + Delta-G solvation = -17003.923920 eV Core-core repulsion = 13964.300740 eV Total energy + Delta-G solvation = -3039.623180 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.86572 -39.12059 -37.12774 -34.71878 -33.91768 -32.36362 -31.37719 -30.22917 -26.37972 -25.20710 -22.64513 -21.84203 -21.25444 -19.31992 -18.28825 -17.22637 -16.97119 -15.97199 -15.67554 -15.18483 -14.95310 -14.62021 -14.27463 -13.84877 -13.63513 -13.03081 -12.92987 -12.53751 -12.11598 -11.99010 -11.74342 -11.50348 -11.43811 -11.16515 -11.08643 -10.50537 -10.39534 -10.29855 -9.68095 -9.67018 -8.69582 -8.22846 -8.18260 -6.63135 -3.95298 2.50134 3.17844 3.18434 3.23756 3.38136 3.67096 4.09971 4.20276 4.33302 4.52676 4.63312 4.91814 4.96631 5.04504 5.22465 5.25097 5.38780 5.43259 5.53613 5.54761 5.71176 5.80556 5.96940 6.11975 6.77403 6.90003 7.34911 7.74151 7.93657 8.37659 8.67383 9.00509 9.36407 9.89853 10.51956 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.063714 B = 0.004216 C = 0.004033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.361388 B = 6640.421583 C = 6940.928154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.030 3.970 3 Si 0.939 3.061 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.306 4.306 8 H 0.112 0.888 9 N -0.500 5.500 10 C 0.396 3.604 11 O -0.596 6.596 12 C 0.513 3.487 13 O -0.549 6.549 14 N -0.710 5.710 15 C 0.123 3.877 16 C 0.068 3.932 17 H 0.080 0.920 18 C -0.148 4.148 19 C -0.155 4.155 20 C 0.049 3.951 21 O -0.373 6.373 22 H 0.280 0.720 23 H 0.405 0.595 24 H 0.413 0.587 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.267 -17.563 -0.057 17.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C -0.176 4.176 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.436 4.436 8 H 0.130 0.870 9 N -0.135 5.135 10 C 0.180 3.820 11 O -0.484 6.484 12 C 0.298 3.702 13 O -0.427 6.427 14 N -0.364 5.364 15 C -0.001 4.001 16 C 0.010 3.990 17 H 0.098 0.902 18 C -0.186 4.186 19 C -0.193 4.193 20 C -0.027 4.027 21 O -0.292 6.292 22 H 0.090 0.910 23 H 0.240 0.760 24 H 0.249 0.751 25 H 0.097 0.903 26 H 0.091 0.909 27 H 0.102 0.898 28 H 0.105 0.895 29 H 0.095 0.905 30 H 0.101 0.899 31 H 0.086 0.914 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.083 -17.235 0.065 17.361 hybrid contribution 0.140 0.477 -0.087 0.505 sum 2.223 -16.758 -0.022 16.905 Atomic orbital electron populations 1.69482 1.06514 1.29290 1.45547 1.25582 0.95623 1.00439 0.95979 0.85720 0.79381 0.79697 0.78744 1.19932 1.20550 1.18900 1.19887 0.93981 0.81907 1.47864 0.86989 1.41555 1.10467 1.04198 1.57270 1.18960 0.87816 0.84224 0.90979 1.90581 1.12904 1.86627 1.58333 1.20685 0.87465 0.85926 0.76159 1.90680 1.14068 1.88162 1.49777 1.45568 1.11333 1.04331 1.75170 1.21467 0.93866 0.81863 1.02898 1.23272 0.92983 0.94644 0.88056 0.90240 1.23268 0.99084 0.93694 1.02580 1.23143 0.98465 0.98851 0.98822 1.23119 1.00069 0.81658 0.97885 1.88522 1.75676 1.25329 1.39717 0.90968 0.76007 0.75086 0.90261 0.90898 0.89789 0.89466 0.90451 0.89921 0.91411 0.91325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.67 13.03 55.53 0.72 -22.95 16 2 C 0.03 0.80 5.51 -17.39 -0.10 0.71 16 3 Si 0.94 20.38 29.56 -169.99 -5.02 15.35 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 6 H -0.26 -5.70 7.11 56.52 0.40 -5.30 16 7 C -0.31 -8.60 9.67 -15.14 -0.15 -8.75 16 8 H 0.11 3.21 7.15 -52.49 -0.38 2.84 16 9 N -0.50 -13.73 5.25 -11.59 -0.06 -13.80 16 10 C 0.40 10.33 7.82 -11.87 -0.09 10.23 16 11 O -0.60 -16.52 16.03 5.37 0.09 -16.44 16 12 C 0.51 11.63 7.87 -11.87 -0.09 11.53 16 13 O -0.55 -13.25 16.47 5.42 0.09 -13.16 16 14 N -0.71 -12.96 5.53 -60.93 -0.34 -13.29 16 15 C 0.12 1.76 5.39 -4.05 -0.02 1.73 16 16 C 0.07 0.77 3.47 -25.71 -0.09 0.68 16 17 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 18 C -0.15 -1.19 6.58 -24.40 -0.16 -1.36 16 19 C -0.16 -1.09 7.03 -24.70 -0.17 -1.26 16 20 C 0.05 0.46 7.79 37.88 0.30 0.75 16 21 O -0.37 -4.90 11.02 -35.23 -0.39 -5.29 16 22 H 0.28 7.05 8.30 -40.82 -0.34 6.71 16 23 H 0.40 11.15 7.35 -40.82 -0.30 10.85 16 24 H 0.41 7.39 7.93 -40.82 -0.32 7.06 16 25 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.07 1.09 8.14 -51.92 -0.42 0.67 16 27 H 0.08 0.67 8.06 -51.93 -0.42 0.25 16 28 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 283.25 15.07 4.27 4.27 Total: -1.00 -32.15 283.25 -5.16 -37.30 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -3.93 Total: 13.72 kcal Atomic # 6 Polarization: 14.85 SS G_CDS: -0.58 Total: 14.28 kcal Atomic # 7 Polarization: -50.36 SS G_CDS: 0.33 Total: -50.04 kcal Atomic # 8 Polarization: -34.67 SS G_CDS: -0.21 Total: -34.88 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -32.15 -5.16 -37.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037243522.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.787 kcal (2) G-P(sol) polarization free energy of solvation -32.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds