Wall clock time and date at job start Mon Mar 30 2020 03:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31012 * 1 3 3 Si 1.86797 * 120.00079 * 2 1 4 4 H 1.48500 * 109.47228 * 269.99925 * 3 2 1 5 5 H 1.48497 * 109.46989 * 30.00149 * 3 2 1 6 6 H 1.48501 * 109.47254 * 150.00040 * 3 2 1 7 7 C 1.39597 * 120.00039 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99788 * 179.97438 * 7 2 1 9 9 N 1.36117 * 119.99453 * 0.02562 * 7 2 1 10 10 C 1.34784 * 119.99320 * 179.97438 * 9 7 2 11 11 O 1.21493 * 120.00173 * 0.02562 * 10 9 7 12 12 C 1.48832 * 119.99557 * 180.02562 * 10 9 7 13 13 O 1.21442 * 120.00249 * 359.97438 * 12 10 9 14 14 N 1.34777 * 119.99880 * 179.97438 * 12 10 9 15 15 C 1.46498 * 120.00260 * 179.97438 * 14 12 10 16 16 C 1.52994 * 109.47363 * 180.02562 * 15 14 12 17 17 H 1.09000 * 110.27451 * 304.36261 * 16 15 14 18 18 C 1.54947 * 110.39537 * 182.21509 * 16 15 14 19 19 C 1.55457 * 100.98961 * 204.64739 * 18 16 15 20 20 C 1.54382 * 102.18540 * 34.03935 * 19 18 16 21 21 O 1.43233 * 107.66464 * 338.74226 * 20 19 18 22 22 H 0.96990 * 120.00057 * 359.97438 * 1 2 3 23 23 H 0.96995 * 120.00489 * 0.02562 * 9 7 2 24 24 H 0.97005 * 119.99974 * 0.02562 * 14 12 10 25 25 H 1.09001 * 109.46995 * 59.99800 * 15 14 12 26 26 H 1.09009 * 109.47049 * 300.00193 * 15 14 12 27 27 H 1.08999 * 111.12360 * 322.51237 * 18 16 15 28 28 H 1.09001 * 111.12353 * 86.63542 * 18 16 15 29 29 H 1.08994 * 110.83103 * 275.89000 * 19 18 16 30 30 H 1.08999 * 110.92148 * 152.22878 * 19 18 16 31 31 H 1.09002 * 109.83024 * 219.18066 * 20 19 18 32 32 H 1.08996 * 109.83002 * 98.29659 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6177 0.0000 4 1 2.4917 2.0464 -1.4001 5 1 1.4416 2.6526 0.7001 6 1 3.5417 1.4401 0.7000 7 6 2.0081 -1.2089 0.0005 8 1 3.0881 -1.2089 0.0001 9 7 1.3274 -2.3877 0.0005 10 6 2.0014 -3.5549 0.0005 11 8 3.2163 -3.5549 0.0010 12 6 1.2572 -4.8438 0.0000 13 8 0.0427 -4.8438 0.0000 14 7 1.9310 -6.0110 -0.0006 15 6 1.1985 -7.2798 -0.0006 16 6 2.1927 -8.4427 -0.0006 17 1 2.8768 -8.3547 -0.8446 18 6 1.4405 -9.7961 -0.0567 19 6 2.4899 -10.7453 0.5872 20 6 3.1618 -9.8278 1.6313 21 8 2.9258 -8.4720 1.2345 22 1 -0.4850 0.8400 0.0004 23 1 0.3575 -2.3877 -0.0002 24 1 2.9011 -6.0111 -0.0002 25 1 0.5715 -7.3373 -0.8903 26 1 0.5722 -7.3377 0.8897 27 1 0.5267 -9.7626 0.5365 28 1 1.2275 -10.0848 -1.0860 29 1 3.2132 -11.0836 -0.1546 30 1 2.0035 -11.5924 1.0709 31 1 4.2337 -10.0235 1.6602 32 1 2.7269 -10.0063 2.6147 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037243522.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:53 Heat of formation + Delta-G solvation = -150.866459 kcal Electronic energy + Delta-G solvation = -17005.041726 eV Core-core repulsion = 13964.300740 eV Total energy + Delta-G solvation = -3040.740986 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.35758 -40.36962 -39.07461 -36.54929 -35.68099 -33.46969 -33.10603 -31.31798 -28.08747 -26.68229 -24.26573 -22.58135 -22.28687 -21.10095 -20.36144 -18.87153 -17.98305 -17.63329 -16.80573 -16.74357 -16.60411 -16.11265 -15.74657 -15.54470 -14.88994 -14.65839 -14.26168 -13.68398 -13.66016 -13.51702 -12.96519 -12.65933 -12.59053 -12.45996 -12.17220 -12.15503 -12.09770 -11.69295 -11.66931 -10.51426 -10.28966 -10.25527 -10.23297 -8.66284 -6.11347 0.59008 1.41302 1.47561 1.56186 1.81319 2.29403 2.36726 2.79180 3.14909 3.30100 3.50695 3.73574 3.98789 4.02835 4.13497 4.20119 4.41910 4.55360 4.61835 4.85267 4.92350 4.98610 5.03913 5.24571 5.25315 5.29048 5.67423 6.06600 6.14892 6.37477 6.80058 7.00113 7.27191 7.79548 8.49701 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.063714 B = 0.004216 C = 0.004033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.361388 B = 6640.421583 C = 6940.928154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C -0.004 4.004 3 Si 1.012 2.988 4 H -0.263 1.263 5 H -0.266 1.266 6 H -0.264 1.264 7 C -0.347 4.347 8 H 0.098 0.902 9 N -0.510 5.510 10 C 0.388 3.612 11 O -0.618 6.618 12 C 0.518 3.482 13 O -0.567 6.567 14 N -0.691 5.691 15 C 0.118 3.882 16 C 0.068 3.932 17 H 0.088 0.912 18 C -0.142 4.142 19 C -0.145 4.145 20 C 0.038 3.962 21 O -0.408 6.408 22 H 0.289 0.711 23 H 0.401 0.599 24 H 0.415 0.585 25 H 0.093 0.907 26 H 0.066 0.934 27 H 0.084 0.916 28 H 0.108 0.892 29 H 0.089 0.911 30 H 0.102 0.898 31 H 0.075 0.925 32 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.472 -18.515 -0.393 18.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.209 4.209 3 Si 0.832 3.168 4 H -0.188 1.188 5 H -0.190 1.190 6 H -0.188 1.188 7 C -0.477 4.477 8 H 0.116 0.884 9 N -0.144 5.144 10 C 0.173 3.827 11 O -0.508 6.508 12 C 0.301 3.699 13 O -0.447 6.447 14 N -0.344 5.344 15 C -0.005 4.005 16 C 0.011 3.989 17 H 0.106 0.894 18 C -0.180 4.180 19 C -0.183 4.183 20 C -0.038 4.038 21 O -0.328 6.328 22 H 0.100 0.900 23 H 0.236 0.764 24 H 0.252 0.748 25 H 0.111 0.889 26 H 0.085 0.915 27 H 0.103 0.897 28 H 0.126 0.874 29 H 0.108 0.892 30 H 0.120 0.880 31 H 0.093 0.907 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.287 -18.238 -0.271 18.383 hybrid contribution 0.078 0.672 0.044 0.678 sum 2.365 -17.566 -0.227 17.726 Atomic orbital electron populations 1.69546 1.07844 1.30868 1.45060 1.26564 0.96522 1.03491 0.94299 0.84676 0.77962 0.74903 0.79244 1.18832 1.19036 1.18846 1.20002 0.93715 0.83103 1.50867 0.88364 1.41648 1.10225 1.04756 1.57741 1.19620 0.87867 0.85287 0.89911 1.90543 1.13895 1.87292 1.59026 1.20065 0.87005 0.85950 0.76891 1.90669 1.14434 1.88337 1.51250 1.45593 1.11569 1.04521 1.72677 1.21806 0.94671 0.80801 1.03207 1.23329 0.92823 0.94886 0.87888 0.89419 1.23287 0.98967 0.91693 1.04093 1.23139 0.98215 0.98586 0.98336 1.23348 1.00943 0.80652 0.98836 1.88484 1.76008 1.27843 1.40460 0.90041 0.76443 0.74800 0.88880 0.91550 0.89712 0.87354 0.89223 0.87986 0.90726 0.91047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.78 13.03 21.77 0.28 -48.49 16 2 C 0.00 -0.24 5.51 85.14 0.47 0.23 16 3 Si 1.01 41.31 29.56 68.60 2.03 43.34 16 4 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 5 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 6 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 7 C -0.35 -19.98 9.67 84.36 0.82 -19.17 16 8 H 0.10 5.81 7.15 -2.91 -0.02 5.79 16 9 N -0.51 -28.81 5.25 -308.86 -1.62 -30.43 16 10 C 0.39 20.75 7.82 87.08 0.68 21.43 16 11 O -0.62 -35.03 16.03 -3.69 -0.06 -35.09 16 12 C 0.52 23.71 7.87 87.08 0.69 24.40 16 13 O -0.57 -27.59 16.47 -3.53 -0.06 -27.65 16 14 N -0.69 -25.05 5.53 -465.00 -2.57 -27.62 16 15 C 0.12 3.23 5.39 86.38 0.47 3.70 16 16 C 0.07 1.42 3.47 31.26 0.11 1.53 16 17 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 18 C -0.14 -1.89 6.58 32.11 0.21 -1.68 16 19 C -0.15 -1.59 7.03 31.91 0.22 -1.37 16 20 C 0.04 0.64 7.79 72.45 0.56 1.21 16 21 O -0.41 -10.28 11.02 -148.98 -1.64 -11.92 16 22 H 0.29 14.37 8.30 -92.72 -0.77 13.61 16 23 H 0.40 22.80 7.35 -92.71 -0.68 22.12 16 24 H 0.42 14.80 7.93 -92.70 -0.74 14.06 16 25 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 26 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 27 H 0.08 1.13 8.06 -2.39 -0.02 1.11 16 28 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.07 1.12 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -69.69 283.25 0.33 -69.37 By element: Atomic # 1 Polarization: 38.48 SS G_CDS: -0.26 Total: 38.22 kcal Atomic # 6 Polarization: 26.05 SS G_CDS: 4.22 Total: 30.27 kcal Atomic # 7 Polarization: -102.64 SS G_CDS: -3.91 Total: -106.55 kcal Atomic # 8 Polarization: -72.90 SS G_CDS: -1.76 Total: -74.65 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Total: -69.69 0.33 -69.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037243522.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.497 kcal (2) G-P(sol) polarization free energy of solvation -69.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds