Wall clock time and date at job start Mon Mar 30 2020 03:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31021 * 1 3 3 Si 1.86794 * 119.99860 * 2 1 4 4 H 1.48507 * 109.47029 * 269.99696 * 3 2 1 5 5 H 1.48496 * 109.47495 * 29.99969 * 3 2 1 6 6 H 1.48501 * 109.47083 * 150.00317 * 3 2 1 7 7 C 1.39585 * 119.99733 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00316 * 359.97438 * 7 2 1 9 9 N 1.36119 * 119.99746 * 180.02562 * 7 2 1 10 10 C 1.34777 * 119.99799 * 179.97438 * 9 7 2 11 11 O 1.21501 * 120.00323 * 359.97438 * 10 9 7 12 12 C 1.48839 * 119.99683 * 179.97438 * 10 9 7 13 13 O 1.21439 * 119.99964 * 0.02562 * 12 10 9 14 14 N 1.34777 * 119.99683 * 180.02562 * 12 10 9 15 15 C 1.47424 * 125.64963 * 359.97438 * 14 12 10 16 16 C 1.54912 * 104.83445 * 155.89353 * 15 14 12 17 17 C 1.55159 * 101.58022 * 37.00486 * 16 15 14 18 18 C 1.47023 * 125.64709 * 180.02562 * 14 12 10 19 19 H 1.09003 * 110.00780 * 300.52550 * 18 14 12 20 20 C 1.52997 * 109.88316 * 61.61921 * 18 14 12 21 21 O 1.42898 * 109.47319 * 292.81168 * 20 18 14 22 22 H 0.96997 * 119.99772 * 0.02562 * 1 2 3 23 23 H 0.97005 * 120.00094 * 359.97438 * 9 7 2 24 24 H 1.08998 * 110.36794 * 37.04896 * 15 14 12 25 25 H 1.09005 * 110.45613 * 274.77859 * 15 14 12 26 26 H 1.08998 * 110.99744 * 278.93508 * 16 15 14 27 27 H 1.08998 * 111.00603 * 155.08354 * 16 15 14 28 28 H 1.08998 * 110.71559 * 206.14140 * 17 16 15 29 29 H 1.08997 * 110.71757 * 82.86341 * 17 16 15 30 30 H 1.09002 * 109.47153 * 172.80861 * 20 18 14 31 31 H 1.09001 * 109.46832 * 52.81052 * 20 18 14 32 32 H 0.96701 * 113.99881 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2441 1.6177 0.0000 4 1 2.4917 2.0464 -1.4001 5 1 1.4416 2.6527 0.7000 6 1 3.5417 1.4401 0.7000 7 6 2.0081 -1.2089 -0.0005 8 1 1.4681 -2.1442 -0.0005 9 7 3.3693 -1.2089 0.0000 10 6 4.0431 -2.3761 0.0000 11 8 3.4356 -3.4283 0.0000 12 6 5.5315 -2.3761 0.0000 13 8 6.1387 -1.3244 0.0005 14 7 6.2053 -3.5433 -0.0005 15 6 5.5974 -4.8864 -0.0006 16 6 6.6789 -5.8112 -0.6129 17 6 7.9793 -5.1994 -0.0280 18 6 7.6684 -3.6880 -0.0001 19 1 8.0911 -3.2065 -0.8819 20 6 8.2531 -3.0595 1.2664 21 8 8.0624 -1.6439 1.2274 22 1 -0.4850 0.8400 -0.0004 23 1 3.8543 -0.3688 0.0004 24 1 4.6978 -4.8956 -0.6159 25 1 5.3632 -5.1986 1.0172 26 1 6.6738 -5.7509 -1.7011 27 1 6.5471 -6.8405 -0.2795 28 1 8.8292 -5.4065 -0.6783 29 1 8.1626 -5.5737 0.9791 30 1 9.3188 -3.2812 1.3234 31 1 7.7493 -3.4701 2.1416 32 1 8.4100 -1.1788 2.0007 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042434976.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:45 Heat of formation + Delta-G solvation = -132.119509 kcal Electronic energy + Delta-G solvation = -17989.831391 eV Core-core repulsion = 14949.903334 eV Total energy + Delta-G solvation = -3039.928058 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.57937 -39.79392 -38.33317 -37.16282 -36.26405 -33.98945 -32.52212 -31.19518 -28.01906 -26.14835 -25.06760 -22.78033 -21.81271 -21.13000 -19.89611 -18.28414 -18.12757 -17.81736 -17.39764 -16.80868 -16.16005 -15.61367 -15.30191 -15.09365 -14.76019 -14.50648 -14.43564 -14.14009 -13.76372 -13.18748 -13.09670 -12.71580 -12.56726 -12.42421 -12.15510 -12.07534 -11.74325 -11.70332 -11.58146 -10.84027 -10.46829 -10.08529 -9.64575 -8.62496 -6.16015 0.62970 1.26970 1.31573 1.37311 1.67300 2.09350 2.34304 2.94520 3.07157 3.30055 3.62381 3.80286 3.88037 4.14964 4.24796 4.32339 4.44971 4.60826 4.65430 4.92668 5.01313 5.06936 5.13054 5.27314 5.33774 5.42654 5.74628 6.21106 6.38224 6.58874 6.95165 7.00294 7.19469 7.64814 8.52365 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.034356 B = 0.007108 C = 0.006057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.791472 B = 3938.358214 C = 4621.888911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.011 3.989 3 Si 0.947 3.053 4 H -0.253 1.253 5 H -0.255 1.255 6 H -0.252 1.252 7 C -0.338 4.338 8 H 0.078 0.922 9 N -0.537 5.537 10 C 0.410 3.590 11 O -0.594 6.594 12 C 0.521 3.479 13 O -0.524 6.524 14 N -0.593 5.593 15 C 0.091 3.909 16 C -0.123 4.123 17 C -0.108 4.108 18 C 0.122 3.878 19 H 0.070 0.930 20 C 0.063 3.937 21 O -0.571 6.571 22 H 0.290 0.710 23 H 0.391 0.609 24 H 0.072 0.928 25 H 0.065 0.935 26 H 0.077 0.923 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.099 0.901 30 H 0.088 0.912 31 H 0.042 0.958 32 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.952 -7.501 1.759 20.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.193 4.193 3 Si 0.767 3.233 4 H -0.177 1.177 5 H -0.178 1.178 6 H -0.176 1.176 7 C -0.468 4.468 8 H 0.096 0.904 9 N -0.176 5.176 10 C 0.194 3.806 11 O -0.481 6.481 12 C 0.305 3.695 13 O -0.401 6.401 14 N -0.328 5.328 15 C -0.031 4.031 16 C -0.161 4.161 17 C -0.146 4.146 18 C 0.020 3.980 19 H 0.088 0.912 20 C -0.016 4.016 21 O -0.377 6.377 22 H 0.100 0.900 23 H 0.227 0.773 24 H 0.090 0.910 25 H 0.083 0.917 26 H 0.096 0.904 27 H 0.132 0.868 28 H 0.133 0.867 29 H 0.117 0.883 30 H 0.105 0.895 31 H 0.060 0.940 32 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 18.349 -7.587 1.189 19.891 hybrid contribution -0.099 1.263 0.584 1.395 sum 18.250 -6.324 1.772 19.396 Atomic orbital electron populations 1.69547 1.07757 1.30236 1.45666 1.26031 0.96360 1.02047 0.94899 0.85609 0.79283 0.77890 0.80534 1.17731 1.17837 1.17594 1.19152 0.80356 0.96009 1.51251 0.90429 1.41692 1.06594 1.07560 1.61707 1.19778 0.88556 0.84581 0.87639 1.90539 1.70231 1.30874 1.56474 1.19611 0.87496 0.84023 0.78410 1.90744 1.69710 1.30696 1.48905 1.48292 1.07645 1.05646 1.71239 1.22682 0.98035 0.80602 1.01767 1.22852 0.92662 0.99590 1.00981 1.22663 0.98911 0.88850 1.04176 1.22075 0.78772 0.98818 0.98368 0.91226 1.22710 1.00255 0.82084 0.96547 1.86937 1.84365 1.18986 1.47394 0.89989 0.77324 0.90987 0.91670 0.90426 0.86787 0.86731 0.88270 0.89454 0.93979 0.77216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -52.15 13.94 21.77 0.30 -51.85 16 2 C 0.01 0.63 5.51 85.14 0.47 1.10 16 3 Si 0.95 41.15 27.74 68.60 1.90 43.05 16 4 H -0.25 -10.52 7.11 99.48 0.71 -9.81 16 5 H -0.25 -10.32 7.11 99.48 0.71 -9.62 16 6 H -0.25 -10.56 6.53 99.48 0.65 -9.91 16 7 C -0.34 -20.28 10.16 84.35 0.86 -19.42 16 8 H 0.08 5.29 7.37 -2.91 -0.02 5.26 16 9 N -0.54 -28.95 5.06 -308.86 -1.56 -30.51 16 10 C 0.41 21.33 7.78 87.08 0.68 22.00 16 11 O -0.59 -33.06 13.33 -3.72 -0.05 -33.11 16 12 C 0.52 23.32 7.64 87.08 0.67 23.99 16 13 O -0.52 -24.58 13.77 19.47 0.27 -24.31 16 14 N -0.59 -20.86 3.06 -790.29 -2.42 -23.28 16 15 C 0.09 2.78 6.06 86.86 0.53 3.31 16 16 C -0.12 -2.24 7.09 31.99 0.23 -2.01 16 17 C -0.11 -1.61 6.48 31.78 0.21 -1.40 16 18 C 0.12 3.10 3.29 45.34 0.15 3.25 16 19 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 20 C 0.06 1.44 6.46 71.98 0.46 1.91 16 21 O -0.57 -17.31 10.38 -125.98 -1.31 -18.62 16 22 H 0.29 15.22 8.30 -92.71 -0.77 14.45 16 23 H 0.39 19.59 5.22 -92.70 -0.48 19.11 16 24 H 0.07 2.70 6.15 -2.39 -0.01 2.69 16 25 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 26 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.10 1.11 7.85 -2.39 -0.02 1.09 16 30 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.38 8.03 9.12 -74.06 -0.68 7.36 16 Total: -1.00 -76.62 269.47 1.32 -75.30 By element: Atomic # 1 Polarization: 30.66 SS G_CDS: -0.06 Total: 30.60 kcal Atomic # 6 Polarization: 28.48 SS G_CDS: 4.24 Total: 32.72 kcal Atomic # 7 Polarization: -101.95 SS G_CDS: -3.68 Total: -105.63 kcal Atomic # 8 Polarization: -74.95 SS G_CDS: -1.09 Total: -76.03 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 1.90 Total: 43.05 kcal Total: -76.62 1.32 -75.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042434976.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.824 kcal (2) G-P(sol) polarization free energy of solvation -76.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds