Wall clock time and date at job start Mon Mar 30 2020 03:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31008 * 1 3 3 Si 1.86800 * 120.00003 * 2 1 4 4 H 1.48505 * 109.47117 * 240.00204 * 3 2 1 5 5 H 1.48502 * 109.47052 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47289 * 120.00223 * 3 2 1 7 7 C 1.39582 * 120.00325 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00396 * 179.97438 * 7 2 1 9 9 N 1.36118 * 119.99963 * 0.02562 * 7 2 1 10 10 C 1.34773 * 120.00525 * 180.02562 * 9 7 2 11 11 O 1.21504 * 119.99718 * 359.97438 * 10 9 7 12 12 C 1.48827 * 120.00409 * 179.97438 * 10 9 7 13 13 O 1.21438 * 120.00206 * 353.19057 * 12 10 9 14 14 N 1.34782 * 119.99965 * 173.19385 * 12 10 9 15 15 C 1.46924 * 120.63281 * 351.24503 * 14 12 10 16 16 C 1.53191 * 108.89664 * 233.52067 * 15 14 12 17 17 C 1.53079 * 109.29110 * 305.57799 * 16 15 14 18 18 C 1.53040 * 109.65896 * 61.15586 * 17 16 15 19 19 H 1.09008 * 109.52456 * 58.66161 * 18 17 16 20 20 O 1.42897 * 109.49691 * 178.74553 * 18 17 16 21 21 C 1.46927 * 120.62873 * 171.23205 * 14 12 10 22 22 H 0.97003 * 120.00359 * 359.97438 * 1 2 3 23 23 H 0.97007 * 120.00141 * 359.97438 * 9 7 2 24 24 H 1.09005 * 109.58222 * 353.38043 * 15 14 12 25 25 H 1.09003 * 109.58009 * 113.65914 * 15 14 12 26 26 H 1.08995 * 109.49701 * 65.39047 * 16 15 14 27 27 H 1.08996 * 109.49715 * 185.48468 * 16 15 14 28 28 H 1.08997 * 109.34461 * 301.12402 * 17 16 15 29 29 H 1.08999 * 109.43326 * 181.23621 * 17 16 15 30 30 H 0.96697 * 114.00235 * 179.84053 * 20 18 17 31 31 H 1.09001 * 109.58528 * 246.19605 * 21 14 12 32 32 H 1.08996 * 109.58746 * 6.61830 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6177 0.0000 4 1 3.0978 1.6964 -1.2126 5 1 1.2791 2.7465 0.0006 6 1 3.0979 1.6964 1.2124 7 6 2.0081 -1.2088 -0.0005 8 1 3.0881 -1.2088 -0.0010 9 7 1.3275 -2.3876 -0.0016 10 6 2.0013 -3.5548 -0.0016 11 8 3.2164 -3.5548 -0.0011 12 6 1.2572 -4.8437 -0.0022 13 8 0.0492 -4.8475 0.1221 14 7 1.9241 -6.0068 -0.1405 15 6 3.3531 -6.0144 -0.4819 16 6 3.5640 -6.8990 -1.7147 17 6 2.9706 -8.2850 -1.4500 18 6 1.4672 -8.1608 -1.1923 19 1 0.9866 -7.6993 -2.0551 20 8 0.9117 -9.4592 -0.9746 21 6 1.2359 -7.2912 0.0475 22 1 -0.4851 0.8400 0.0004 23 1 0.3575 -2.3877 -0.0016 24 1 3.6819 -4.9984 -0.7006 25 1 3.9267 -6.4118 0.3555 26 1 3.0660 -6.4501 -2.5740 27 1 4.6308 -6.9904 -1.9186 28 1 3.4537 -8.7240 -0.5771 29 1 3.1388 -8.9232 -2.3175 30 1 -0.0398 -9.4561 -0.8021 31 1 1.6366 -7.7951 0.9271 32 1 0.1678 -7.1178 0.1781 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042470873.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:38 Heat of formation + Delta-G solvation = -113.559200 kcal Electronic energy + Delta-G solvation = -17729.669631 eV Core-core repulsion = 14690.546409 eV Total energy + Delta-G solvation = -3039.123222 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.09394 -38.23019 -37.04999 -35.76334 -34.28617 -32.22502 -31.47109 -29.82114 -26.39459 -25.08251 -23.03152 -22.33558 -20.37253 -19.00355 -18.16019 -17.34824 -16.47017 -16.22133 -15.36423 -15.07741 -14.77119 -14.30648 -14.28340 -13.86530 -13.22000 -13.13243 -12.88765 -12.50114 -12.34678 -11.89035 -11.79791 -11.28304 -11.10906 -10.91893 -10.59767 -10.47740 -10.44438 -10.21794 -10.11762 -9.73347 -8.37107 -8.27177 -7.97153 -6.74900 -4.07369 2.35211 3.08562 3.13082 3.13355 3.23215 3.97596 4.14153 4.17567 4.68150 4.84369 4.96594 5.07399 5.12569 5.24249 5.39267 5.58483 5.73258 5.84039 5.90107 5.97497 6.01865 6.06554 6.37596 6.56583 6.90375 7.23956 7.52411 7.61428 7.74528 8.25646 8.52222 8.87715 9.22838 9.76460 10.39354 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.049446 B = 0.005507 C = 0.005097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.138989 B = 5083.038216 C = 5492.612438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.033 3.967 3 Si 0.941 3.059 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.307 4.307 8 H 0.114 0.886 9 N -0.492 5.492 10 C 0.390 3.610 11 O -0.586 6.586 12 C 0.516 3.484 13 O -0.549 6.549 14 N -0.591 5.591 15 C 0.067 3.933 16 C -0.133 4.133 17 C -0.113 4.113 18 C 0.093 3.907 19 H 0.059 0.941 20 O -0.567 6.567 21 C 0.079 3.921 22 H 0.282 0.718 23 H 0.405 0.595 24 H 0.158 0.842 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.379 0.621 31 H 0.070 0.930 32 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.735 -10.799 -2.282 11.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.175 4.175 3 Si 0.766 3.234 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.438 4.438 8 H 0.132 0.868 9 N -0.124 5.124 10 C 0.176 3.824 11 O -0.477 6.477 12 C 0.303 3.697 13 O -0.426 6.426 14 N -0.327 5.327 15 C -0.054 4.054 16 C -0.171 4.171 17 C -0.150 4.150 18 C 0.033 3.967 19 H 0.077 0.923 20 O -0.371 6.371 21 C -0.045 4.045 22 H 0.093 0.907 23 H 0.241 0.759 24 H 0.174 0.826 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.099 0.901 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.226 0.774 31 H 0.089 0.911 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.298 -10.824 -2.308 11.548 hybrid contribution -0.860 0.737 0.161 1.144 sum 2.438 -10.086 -2.147 10.597 Atomic orbital electron populations 1.69472 1.06598 1.29678 1.44554 1.25621 0.95632 1.00612 0.95627 0.85753 0.78887 0.79140 0.79586 1.19280 1.20549 1.19294 1.19874 0.94049 0.81800 1.48044 0.86798 1.41588 1.10544 1.04241 1.56053 1.18851 0.87759 0.84157 0.91645 1.90255 1.12976 1.84962 1.59466 1.20663 0.87067 0.85721 0.76253 1.90670 1.14316 1.87555 1.50103 1.47730 1.11308 1.04164 1.69471 1.22990 0.79665 1.07010 0.95718 1.21969 1.01298 0.94447 0.99377 1.21523 0.93109 0.97962 1.02431 1.22151 0.95232 0.82859 0.96442 0.92280 1.86491 1.27698 1.28616 1.94335 1.22271 0.99679 0.84559 0.97991 0.90710 0.75937 0.82586 0.92326 0.91576 0.90118 0.91250 0.91414 0.77401 0.91135 0.89086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -22.65 13.03 55.53 0.72 -21.93 16 2 C 0.03 0.83 5.51 -17.40 -0.10 0.73 16 3 Si 0.94 19.49 29.56 -169.99 -5.02 14.47 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 6 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 7 C -0.31 -8.18 9.67 -15.15 -0.15 -8.33 16 8 H 0.11 3.06 7.15 -52.49 -0.38 2.69 16 9 N -0.49 -12.81 5.24 -11.59 -0.06 -12.87 16 10 C 0.39 9.57 7.66 -11.88 -0.09 9.48 16 11 O -0.59 -14.72 12.74 5.36 0.07 -14.65 16 12 C 0.52 11.32 7.71 -11.88 -0.09 11.23 16 13 O -0.55 -12.89 15.92 5.42 0.09 -12.80 16 14 N -0.59 -10.63 2.97 -173.51 -0.52 -11.15 16 15 C 0.07 1.10 5.96 -3.71 -0.02 1.07 16 16 C -0.13 -1.72 6.09 -26.59 -0.16 -1.88 16 17 C -0.11 -1.38 5.53 -26.67 -0.15 -1.52 16 18 C 0.09 1.20 3.62 -26.61 -0.10 1.11 16 19 H 0.06 0.80 8.14 -51.92 -0.42 0.38 16 20 O -0.57 -6.68 13.32 -35.23 -0.47 -7.15 16 21 C 0.08 1.17 6.07 -3.71 -0.02 1.14 16 22 H 0.28 6.86 8.30 -40.82 -0.34 6.52 16 23 H 0.41 10.70 7.37 -40.82 -0.30 10.40 16 24 H 0.16 3.02 4.32 -54.83 -0.24 2.78 16 25 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.38 2.98 9.08 45.56 0.41 3.39 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.09 1.40 7.00 -51.93 -0.36 1.03 16 LS Contribution 272.17 15.07 4.10 4.10 Total: -1.00 -29.55 272.17 -4.92 -34.47 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -2.96 Total: 14.48 kcal Atomic # 6 Polarization: 13.91 SS G_CDS: -0.88 Total: 13.03 kcal Atomic # 7 Polarization: -46.09 SS G_CDS: 0.15 Total: -45.95 kcal Atomic # 8 Polarization: -34.29 SS G_CDS: -0.31 Total: -34.61 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.02 Total: 14.47 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -29.55 -4.92 -34.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042470873.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.089 kcal (2) G-P(sol) polarization free energy of solvation -29.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds