Wall clock time and date at job start Mon Mar 30 2020 03:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31008 * 1 3 3 Si 1.86800 * 120.00003 * 2 1 4 4 H 1.48505 * 109.47117 * 240.00204 * 3 2 1 5 5 H 1.48502 * 109.47052 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47289 * 120.00223 * 3 2 1 7 7 C 1.39582 * 120.00325 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00396 * 179.97438 * 7 2 1 9 9 N 1.36118 * 119.99963 * 0.02562 * 7 2 1 10 10 C 1.34773 * 120.00525 * 180.02562 * 9 7 2 11 11 O 1.21504 * 119.99718 * 359.97438 * 10 9 7 12 12 C 1.48827 * 120.00409 * 179.97438 * 10 9 7 13 13 O 1.21438 * 120.00206 * 353.19057 * 12 10 9 14 14 N 1.34782 * 119.99965 * 173.19385 * 12 10 9 15 15 C 1.46924 * 120.63281 * 351.24503 * 14 12 10 16 16 C 1.53191 * 108.89664 * 233.52067 * 15 14 12 17 17 C 1.53079 * 109.29110 * 305.57799 * 16 15 14 18 18 C 1.53040 * 109.65896 * 61.15586 * 17 16 15 19 19 H 1.09008 * 109.52456 * 58.66161 * 18 17 16 20 20 O 1.42897 * 109.49691 * 178.74553 * 18 17 16 21 21 C 1.46927 * 120.62873 * 171.23205 * 14 12 10 22 22 H 0.97003 * 120.00359 * 359.97438 * 1 2 3 23 23 H 0.97007 * 120.00141 * 359.97438 * 9 7 2 24 24 H 1.09005 * 109.58222 * 353.38043 * 15 14 12 25 25 H 1.09003 * 109.58009 * 113.65914 * 15 14 12 26 26 H 1.08995 * 109.49701 * 65.39047 * 16 15 14 27 27 H 1.08996 * 109.49715 * 185.48468 * 16 15 14 28 28 H 1.08997 * 109.34461 * 301.12402 * 17 16 15 29 29 H 1.08999 * 109.43326 * 181.23621 * 17 16 15 30 30 H 0.96697 * 114.00235 * 179.84053 * 20 18 17 31 31 H 1.09001 * 109.58528 * 246.19605 * 21 14 12 32 32 H 1.08996 * 109.58746 * 6.61830 * 21 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6177 0.0000 4 1 3.0978 1.6964 -1.2126 5 1 1.2791 2.7465 0.0006 6 1 3.0979 1.6964 1.2124 7 6 2.0081 -1.2088 -0.0005 8 1 3.0881 -1.2088 -0.0010 9 7 1.3275 -2.3876 -0.0016 10 6 2.0013 -3.5548 -0.0016 11 8 3.2164 -3.5548 -0.0011 12 6 1.2572 -4.8437 -0.0022 13 8 0.0492 -4.8475 0.1221 14 7 1.9241 -6.0068 -0.1405 15 6 3.3531 -6.0144 -0.4819 16 6 3.5640 -6.8990 -1.7147 17 6 2.9706 -8.2850 -1.4500 18 6 1.4672 -8.1608 -1.1923 19 1 0.9866 -7.6993 -2.0551 20 8 0.9117 -9.4592 -0.9746 21 6 1.2359 -7.2912 0.0475 22 1 -0.4851 0.8400 0.0004 23 1 0.3575 -2.3877 -0.0016 24 1 3.6819 -4.9984 -0.7006 25 1 3.9267 -6.4118 0.3555 26 1 3.0660 -6.4501 -2.5740 27 1 4.6308 -6.9904 -1.9186 28 1 3.4537 -8.7240 -0.5771 29 1 3.1388 -8.9232 -2.3175 30 1 -0.0398 -9.4561 -0.8021 31 1 1.6366 -7.7951 0.9271 32 1 0.1678 -7.1178 0.1781 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042470873.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:38 Heat of formation + Delta-G solvation = -137.413298 kcal Electronic energy + Delta-G solvation = -17730.704022 eV Core-core repulsion = 14690.546409 eV Total energy + Delta-G solvation = -3040.157613 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.71672 -39.71882 -38.73457 -37.07705 -36.10092 -33.66786 -33.27543 -31.02130 -28.15331 -26.67857 -24.32200 -23.85138 -21.70535 -20.72673 -19.93362 -18.54428 -18.07758 -17.79326 -16.97470 -16.76603 -16.15661 -15.94174 -15.63450 -15.35076 -14.80865 -14.77397 -14.19094 -13.89089 -13.66579 -13.55759 -12.97032 -12.92527 -12.64040 -12.49935 -12.11841 -12.02404 -11.81543 -11.57851 -11.51271 -11.24197 -10.29675 -9.82837 -9.70527 -8.66576 -6.11147 0.54580 1.41389 1.49713 1.53609 1.67341 2.26827 2.31909 3.02750 3.14338 3.23784 3.71854 3.79340 3.94346 4.02732 4.11759 4.26724 4.49139 4.61640 4.73670 4.89213 4.99296 5.02212 5.16889 5.26260 5.33394 5.47621 5.67394 6.10751 6.32780 6.71678 6.78412 6.94403 7.26201 7.78772 8.48740 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.049446 B = 0.005507 C = 0.005097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.138989 B = 5083.038216 C = 5492.612438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C -0.004 4.004 3 Si 1.011 2.989 4 H -0.262 1.262 5 H -0.269 1.269 6 H -0.264 1.264 7 C -0.343 4.343 8 H 0.104 0.896 9 N -0.507 5.507 10 C 0.389 3.611 11 O -0.595 6.595 12 C 0.515 3.485 13 O -0.571 6.571 14 N -0.580 5.580 15 C 0.063 3.937 16 C -0.123 4.123 17 C -0.110 4.110 18 C 0.102 3.898 19 H 0.053 0.947 20 O -0.569 6.569 21 C 0.076 3.924 22 H 0.289 0.711 23 H 0.399 0.601 24 H 0.127 0.873 25 H 0.074 0.926 26 H 0.058 0.942 27 H 0.107 0.893 28 H 0.077 0.923 29 H 0.084 0.916 30 H 0.396 0.604 31 H 0.087 0.913 32 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.626 -11.890 -2.604 12.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.208 4.208 3 Si 0.832 3.168 4 H -0.187 1.187 5 H -0.193 1.193 6 H -0.189 1.189 7 C -0.473 4.473 8 H 0.121 0.879 9 N -0.140 5.140 10 C 0.174 3.826 11 O -0.486 6.486 12 C 0.301 3.699 13 O -0.451 6.451 14 N -0.314 5.314 15 C -0.058 4.058 16 C -0.161 4.161 17 C -0.147 4.147 18 C 0.042 3.958 19 H 0.071 0.929 20 O -0.376 6.376 21 C -0.046 4.046 22 H 0.099 0.901 23 H 0.234 0.766 24 H 0.144 0.856 25 H 0.092 0.908 26 H 0.077 0.923 27 H 0.125 0.875 28 H 0.095 0.905 29 H 0.102 0.898 30 H 0.246 0.754 31 H 0.105 0.895 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.202 -11.966 -2.634 12.953 hybrid contribution -1.116 0.898 0.272 1.458 sum 3.086 -11.067 -2.362 11.730 Atomic orbital electron populations 1.69545 1.07929 1.30946 1.44901 1.26557 0.96457 1.03559 0.94272 0.84737 0.77717 0.74688 0.79704 1.18666 1.19321 1.18865 1.19992 0.93843 0.82867 1.50611 0.87865 1.41690 1.10215 1.04819 1.57273 1.19441 0.87922 0.84953 0.90237 1.90280 1.13446 1.85725 1.59150 1.20206 0.86712 0.86023 0.76984 1.90655 1.14885 1.87861 1.51653 1.47824 1.12088 1.04145 1.67348 1.22968 0.78559 1.06234 0.98019 1.21903 1.03059 0.94159 0.96998 1.21515 0.92270 0.97398 1.03524 1.21991 0.96045 0.82943 0.94861 0.92911 1.86469 1.29439 1.27464 1.94206 1.22528 0.99080 0.83099 0.99926 0.90071 0.76603 0.85592 0.90807 0.92343 0.87495 0.90464 0.89779 0.75410 0.89530 0.89762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -47.54 13.03 21.76 0.28 -47.25 16 2 C 0.00 -0.20 5.51 85.14 0.47 0.27 16 3 Si 1.01 39.82 29.56 68.60 2.03 41.85 16 4 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 5 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 6 H -0.26 -10.17 7.11 99.48 0.71 -9.46 16 7 C -0.34 -18.82 9.67 84.35 0.82 -18.01 16 8 H 0.10 5.73 7.15 -2.91 -0.02 5.71 16 9 N -0.51 -27.38 5.24 -308.88 -1.62 -29.00 16 10 C 0.39 19.56 7.66 87.08 0.67 20.23 16 11 O -0.60 -30.57 12.74 -3.73 -0.05 -30.61 16 12 C 0.52 22.85 7.71 87.08 0.67 23.53 16 13 O -0.57 -27.21 15.92 -3.52 -0.06 -27.27 16 14 N -0.58 -20.36 2.97 -821.19 -2.44 -22.81 16 15 C 0.06 1.96 5.96 86.36 0.52 2.48 16 16 C -0.12 -2.87 6.09 30.68 0.19 -2.69 16 17 C -0.11 -2.30 5.53 30.63 0.17 -2.13 16 18 C 0.10 2.37 3.62 30.67 0.11 2.48 16 19 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 20 O -0.57 -11.64 13.32 -148.98 -1.98 -13.62 16 21 C 0.08 2.12 6.07 86.36 0.52 2.64 16 22 H 0.29 14.09 8.30 -92.71 -0.77 13.32 16 23 H 0.40 22.01 7.37 -92.70 -0.68 21.33 16 24 H 0.13 4.86 4.32 -48.31 -0.21 4.65 16 25 H 0.07 2.09 8.14 -2.39 -0.02 2.08 16 26 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.40 5.12 9.08 -74.06 -0.67 4.45 16 31 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.08 2.48 7.00 -2.39 -0.02 2.47 16 Total: -1.00 -63.96 272.17 -0.10 -64.05 By element: Atomic # 1 Polarization: 36.26 SS G_CDS: -0.39 Total: 35.88 kcal Atomic # 6 Polarization: 24.66 SS G_CDS: 4.13 Total: 28.79 kcal Atomic # 7 Polarization: -95.28 SS G_CDS: -3.78 Total: -99.06 kcal Atomic # 8 Polarization: -69.41 SS G_CDS: -2.09 Total: -71.50 kcal Atomic # 14 Polarization: 39.82 SS G_CDS: 2.03 Total: 41.85 kcal Total: -63.96 -0.10 -64.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042470873.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.363 kcal (2) G-P(sol) polarization free energy of solvation -63.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds