Wall clock time and date at job start Mon Mar 30 2020 03:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31009 * 1 3 3 Si 1.86805 * 120.00553 * 2 1 4 4 H 1.48491 * 109.47253 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46747 * 300.00453 * 3 2 1 6 6 H 1.48506 * 109.46703 * 59.99927 * 3 2 1 7 7 C 1.39592 * 119.99946 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00099 * 179.97438 * 7 2 1 9 9 N 1.36117 * 119.99943 * 0.02562 * 7 2 1 10 10 C 1.34767 * 120.00317 * 179.97438 * 9 7 2 11 11 O 1.21504 * 120.00085 * 0.02562 * 10 9 7 12 12 C 1.48831 * 120.00381 * 179.97438 * 10 9 7 13 13 O 1.21440 * 119.99846 * 359.11771 * 12 10 9 14 14 N 1.34779 * 120.00317 * 179.11202 * 12 10 9 15 15 C 1.46498 * 119.99689 * 5.86277 * 14 12 10 16 16 C 1.52992 * 109.47364 * 265.96744 * 15 14 12 17 17 O 1.42904 * 109.47191 * 65.00201 * 16 15 14 18 18 C 1.46501 * 119.99873 * 185.86086 * 14 12 10 19 19 C 1.52999 * 117.49966 * 16.28984 * 18 14 12 20 20 C 1.52997 * 117.49900 * 307.62731 * 18 14 12 21 21 H 0.97002 * 119.99501 * 359.97438 * 1 2 3 22 22 H 0.97004 * 120.00229 * 359.97438 * 9 7 2 23 23 H 1.09005 * 109.47171 * 25.97199 * 15 14 12 24 24 H 1.09002 * 109.46675 * 145.96707 * 15 14 12 25 25 H 1.08997 * 109.47627 * 185.00218 * 16 15 14 26 26 H 1.09010 * 109.47345 * 305.00492 * 16 15 14 27 27 H 0.96701 * 113.99899 * 180.02562 * 17 16 15 28 28 H 1.09004 * 115.54806 * 161.95758 * 18 14 12 29 29 H 1.08998 * 117.49790 * 359.97438 * 19 18 14 30 30 H 1.09003 * 117.49284 * 145.01949 * 19 18 14 31 31 H 1.09001 * 117.49662 * 214.98294 * 20 18 14 32 32 H 1.08994 * 117.50155 * 359.97438 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2443 1.6177 0.0000 4 1 3.7042 1.3462 0.0006 5 1 1.8855 2.3964 -1.2124 6 1 1.8855 2.3964 1.2126 7 6 2.0080 -1.2089 -0.0005 8 1 3.0879 -1.2089 -0.0010 9 7 1.3274 -2.3877 -0.0016 10 6 2.0012 -3.5549 -0.0026 11 8 3.2162 -3.5550 -0.0022 12 6 1.2570 -4.8438 -0.0032 13 8 0.0427 -4.8438 0.0134 14 7 1.9307 -6.0110 -0.0223 15 6 3.3916 -6.0153 0.0871 16 6 4.0079 -6.0325 -1.3131 17 8 3.6832 -4.8174 -1.9915 18 6 1.2020 -7.2752 -0.1525 19 6 -0.2468 -7.2087 -0.6397 20 6 0.0543 -7.5330 0.8257 21 1 -0.4849 0.8401 0.0004 22 1 0.3574 -2.3877 -0.0016 23 1 3.7189 -5.1208 0.6172 24 1 3.7121 -6.9007 0.6361 25 1 5.0909 -6.1253 -1.2324 26 1 3.6115 -6.8789 -1.8743 27 1 4.0419 -4.7592 -2.8876 28 1 1.7992 -8.1320 -0.4648 29 1 -0.6580 -6.2242 -0.8629 30 1 -0.6029 -8.0219 -1.2722 31 1 -0.1039 -8.5595 1.1567 32 1 -0.1585 -6.7623 1.5664 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042480812.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:48 Heat of formation + Delta-G solvation = -61.943293 kcal Electronic energy + Delta-G solvation = -18160.924729 eV Core-core repulsion = 15124.039741 eV Total energy + Delta-G solvation = -3036.884988 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.06838 -37.58328 -36.62875 -35.63315 -34.32375 -33.19815 -31.24372 -28.48793 -25.81520 -23.78294 -22.48475 -22.03112 -21.06948 -18.66932 -17.82025 -17.17887 -16.57051 -15.65330 -15.34411 -14.98885 -14.68273 -14.22996 -13.92274 -13.49998 -13.16022 -12.98282 -12.56429 -12.35973 -11.88526 -11.63476 -11.27948 -11.14586 -10.97034 -10.61011 -10.36833 -10.29617 -10.14562 -9.77709 -9.56591 -9.40957 -8.09463 -7.97804 -7.73378 -6.54022 -3.85386 2.52743 3.18289 3.19457 3.24810 3.33085 4.11608 4.13040 4.42082 4.74556 4.83519 5.09988 5.24834 5.29487 5.32405 5.55200 5.61271 5.69124 5.79896 5.90729 5.95698 6.08663 6.33120 6.57832 6.65597 7.15325 7.43602 7.73929 7.91636 8.19504 8.46265 8.71256 9.10567 9.47615 10.02107 10.61764 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.030931 B = 0.007333 C = 0.006258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.022759 B = 3817.194659 C = 4473.257937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.027 3.973 3 Si 0.935 3.065 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.299 4.299 8 H 0.111 0.889 9 N -0.510 5.510 10 C 0.411 3.589 11 O -0.559 6.559 12 C 0.520 3.480 13 O -0.543 6.543 14 N -0.565 5.565 15 C 0.091 3.909 16 C 0.072 3.928 17 O -0.532 6.532 18 C 0.069 3.931 19 C -0.194 4.194 20 C -0.189 4.189 21 H 0.277 0.723 22 H 0.402 0.598 23 H 0.143 0.857 24 H 0.070 0.930 25 H 0.044 0.956 26 H 0.028 0.972 27 H 0.359 0.641 28 H 0.122 0.878 29 H 0.139 0.861 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.295 -11.871 -1.509 12.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.178 4.178 3 Si 0.761 3.239 4 H -0.189 1.189 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.430 4.430 8 H 0.129 0.871 9 N -0.146 5.146 10 C 0.195 3.805 11 O -0.445 6.445 12 C 0.307 3.693 13 O -0.421 6.421 14 N -0.297 5.297 15 C -0.031 4.031 16 C -0.008 4.008 17 O -0.334 6.334 18 C -0.036 4.036 19 C -0.231 4.231 20 C -0.227 4.227 21 H 0.087 0.913 22 H 0.237 0.763 23 H 0.160 0.840 24 H 0.088 0.912 25 H 0.062 0.938 26 H 0.046 0.954 27 H 0.203 0.797 28 H 0.139 0.861 29 H 0.156 0.844 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.017 -11.585 -0.919 12.296 hybrid contribution 0.123 0.359 -0.646 0.750 sum 4.141 -11.226 -1.566 12.067 Atomic orbital electron populations 1.69495 1.06433 1.28836 1.46732 1.25519 0.95577 1.00230 0.96500 0.85717 0.79816 0.80448 0.77885 1.18872 1.20501 1.20514 1.19852 0.93808 0.81896 1.47438 0.87117 1.41496 1.10232 1.04086 1.58752 1.18825 0.87919 0.84018 0.89752 1.90414 1.12596 1.85201 1.56319 1.20826 0.87145 0.85766 0.75519 1.90509 1.14246 1.87521 1.49854 1.47007 1.07179 1.03852 1.71618 1.22428 0.78163 1.05769 0.96738 1.22368 0.97383 0.86835 0.94183 1.86983 1.78200 1.37877 1.30352 1.21651 0.88803 0.87830 1.05331 1.23826 0.97231 1.05597 0.96452 1.23233 1.03538 1.01766 0.94208 0.91281 0.76319 0.84022 0.91153 0.93795 0.95396 0.79653 0.86058 0.84375 0.89769 0.89114 0.88483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.08 13.03 55.53 0.72 -23.36 16 2 C 0.03 0.72 5.51 -17.40 -0.10 0.63 16 3 Si 0.94 20.53 29.56 -169.99 -5.02 15.51 16 4 H -0.26 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 6 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.30 -8.35 9.67 -15.15 -0.15 -8.49 16 8 H 0.11 3.15 7.15 -52.49 -0.38 2.77 16 9 N -0.51 -13.85 5.24 -11.59 -0.06 -13.91 16 10 C 0.41 10.37 7.15 -11.88 -0.08 10.29 16 11 O -0.56 -14.30 10.47 -17.81 -0.19 -14.48 16 12 C 0.52 11.65 7.33 -11.87 -0.09 11.57 16 13 O -0.54 -12.74 12.22 5.42 0.07 -12.67 16 14 N -0.57 -10.29 2.80 -166.85 -0.47 -10.76 16 15 C 0.09 1.47 5.64 -4.05 -0.02 1.45 16 16 C 0.07 1.05 7.35 37.15 0.27 1.33 16 17 O -0.53 -9.67 10.57 -58.40 -0.62 -10.29 16 18 C 0.07 1.04 6.62 -67.93 -0.45 0.59 16 19 C -0.19 -3.03 9.63 -26.69 -0.26 -3.29 16 20 C -0.19 -2.78 9.88 -26.69 -0.26 -3.04 16 21 H 0.28 7.07 8.30 -40.82 -0.34 6.73 16 22 H 0.40 11.13 7.35 -40.82 -0.30 10.83 16 23 H 0.14 2.76 5.04 -52.53 -0.26 2.49 16 24 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 25 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.03 0.36 8.14 -51.92 -0.42 -0.06 16 27 H 0.36 4.83 9.12 45.56 0.42 5.25 16 28 H 0.12 1.45 8.14 -51.93 -0.42 1.02 16 29 H 0.14 2.67 5.21 -52.16 -0.27 2.40 16 30 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.10 1.67 7.61 -51.93 -0.40 1.27 16 LS Contribution 272.59 15.07 4.11 4.11 Total: -1.00 -31.39 272.59 -5.45 -36.84 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: -2.86 Total: 17.99 kcal Atomic # 6 Polarization: 12.15 SS G_CDS: -1.13 Total: 11.02 kcal Atomic # 7 Polarization: -48.22 SS G_CDS: 0.20 Total: -48.02 kcal Atomic # 8 Polarization: -36.71 SS G_CDS: -0.74 Total: -37.45 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -31.39 -5.45 -36.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042480812.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.102 kcal (2) G-P(sol) polarization free energy of solvation -31.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds