Wall clock time and date at job start Mon Mar 30 2020 03:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31009 * 1 3 3 Si 1.86805 * 120.00553 * 2 1 4 4 H 1.48491 * 109.47253 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46747 * 300.00453 * 3 2 1 6 6 H 1.48506 * 109.46703 * 59.99927 * 3 2 1 7 7 C 1.39592 * 119.99946 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00099 * 179.97438 * 7 2 1 9 9 N 1.36117 * 119.99943 * 0.02562 * 7 2 1 10 10 C 1.34767 * 120.00317 * 179.97438 * 9 7 2 11 11 O 1.21504 * 120.00085 * 0.02562 * 10 9 7 12 12 C 1.48831 * 120.00381 * 179.97438 * 10 9 7 13 13 O 1.21440 * 119.99846 * 359.11771 * 12 10 9 14 14 N 1.34779 * 120.00317 * 179.11202 * 12 10 9 15 15 C 1.46498 * 119.99689 * 5.86277 * 14 12 10 16 16 C 1.52992 * 109.47364 * 265.96744 * 15 14 12 17 17 O 1.42904 * 109.47191 * 65.00201 * 16 15 14 18 18 C 1.46501 * 119.99873 * 185.86086 * 14 12 10 19 19 C 1.52999 * 117.49966 * 16.28984 * 18 14 12 20 20 C 1.52997 * 117.49900 * 307.62731 * 18 14 12 21 21 H 0.97002 * 119.99501 * 359.97438 * 1 2 3 22 22 H 0.97004 * 120.00229 * 359.97438 * 9 7 2 23 23 H 1.09005 * 109.47171 * 25.97199 * 15 14 12 24 24 H 1.09002 * 109.46675 * 145.96707 * 15 14 12 25 25 H 1.08997 * 109.47627 * 185.00218 * 16 15 14 26 26 H 1.09010 * 109.47345 * 305.00492 * 16 15 14 27 27 H 0.96701 * 113.99899 * 180.02562 * 17 16 15 28 28 H 1.09004 * 115.54806 * 161.95758 * 18 14 12 29 29 H 1.08998 * 117.49790 * 359.97438 * 19 18 14 30 30 H 1.09003 * 117.49284 * 145.01949 * 19 18 14 31 31 H 1.09001 * 117.49662 * 214.98294 * 20 18 14 32 32 H 1.08994 * 117.50155 * 359.97438 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2443 1.6177 0.0000 4 1 3.7042 1.3462 0.0006 5 1 1.8855 2.3964 -1.2124 6 1 1.8855 2.3964 1.2126 7 6 2.0080 -1.2089 -0.0005 8 1 3.0879 -1.2089 -0.0010 9 7 1.3274 -2.3877 -0.0016 10 6 2.0012 -3.5549 -0.0026 11 8 3.2162 -3.5550 -0.0022 12 6 1.2570 -4.8438 -0.0032 13 8 0.0427 -4.8438 0.0134 14 7 1.9307 -6.0110 -0.0223 15 6 3.3916 -6.0153 0.0871 16 6 4.0079 -6.0325 -1.3131 17 8 3.6832 -4.8174 -1.9915 18 6 1.2020 -7.2752 -0.1525 19 6 -0.2468 -7.2087 -0.6397 20 6 0.0543 -7.5330 0.8257 21 1 -0.4849 0.8401 0.0004 22 1 0.3574 -2.3877 -0.0016 23 1 3.7189 -5.1208 0.6172 24 1 3.7121 -6.9007 0.6361 25 1 5.0909 -6.1253 -1.2324 26 1 3.6115 -6.8789 -1.8743 27 1 4.0419 -4.7592 -2.8876 28 1 1.7992 -8.1320 -0.4648 29 1 -0.6580 -6.2242 -0.8629 30 1 -0.6029 -8.0219 -1.2722 31 1 -0.1039 -8.5595 1.1567 32 1 -0.1585 -6.7623 1.5664 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042480812.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:48 Heat of formation + Delta-G solvation = -86.234559 kcal Electronic energy + Delta-G solvation = -18161.978077 eV Core-core repulsion = 15124.039741 eV Total energy + Delta-G solvation = -3037.938337 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.71082 -39.41919 -38.06832 -37.06850 -36.19449 -34.73252 -33.28322 -29.84309 -27.77446 -25.50121 -23.72460 -23.25294 -22.65626 -20.54273 -19.69671 -18.61566 -18.00773 -17.33885 -16.87677 -16.68349 -16.52496 -15.72525 -15.38746 -15.10034 -14.82794 -14.43826 -14.31404 -13.71205 -13.63316 -13.26186 -12.89807 -12.65187 -12.43722 -12.31327 -12.06345 -11.84178 -11.56343 -11.42870 -11.21833 -10.67847 -10.12078 -9.58153 -9.41906 -8.55079 -5.98310 0.72238 1.41814 1.46478 1.57627 1.75868 2.31120 2.46445 2.97223 3.12686 3.29106 3.64079 3.88720 4.01458 4.11418 4.16736 4.38599 4.45759 4.55254 4.68696 4.82837 4.83803 5.08680 5.17054 5.35482 5.38459 5.78581 5.81709 6.18662 6.47326 6.89897 7.10084 7.13982 7.43886 7.98034 8.62062 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.030931 B = 0.007333 C = 0.006258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.022759 B = 3817.194659 C = 4473.257937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C -0.013 4.013 3 Si 1.007 2.993 4 H -0.263 1.263 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.334 4.334 8 H 0.097 0.903 9 N -0.532 5.532 10 C 0.410 3.590 11 O -0.563 6.563 12 C 0.514 3.486 13 O -0.562 6.562 14 N -0.554 5.554 15 C 0.083 3.917 16 C 0.070 3.930 17 O -0.575 6.575 18 C 0.065 3.935 19 C -0.204 4.204 20 C -0.180 4.180 21 H 0.283 0.717 22 H 0.394 0.606 23 H 0.105 0.895 24 H 0.118 0.882 25 H 0.070 0.930 26 H 0.054 0.946 27 H 0.376 0.624 28 H 0.171 0.829 29 H 0.096 0.904 30 H 0.118 0.882 31 H 0.131 0.869 32 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.441 -13.903 -1.778 15.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.215 4.215 3 Si 0.829 3.171 4 H -0.187 1.187 5 H -0.194 1.194 6 H -0.194 1.194 7 C -0.464 4.464 8 H 0.115 0.885 9 N -0.168 5.168 10 C 0.194 3.806 11 O -0.448 6.448 12 C 0.300 3.700 13 O -0.442 6.442 14 N -0.284 5.284 15 C -0.038 4.038 16 C -0.008 4.008 17 O -0.381 6.381 18 C -0.038 4.038 19 C -0.241 4.241 20 C -0.218 4.218 21 H 0.093 0.907 22 H 0.228 0.772 23 H 0.123 0.877 24 H 0.136 0.864 25 H 0.088 0.912 26 H 0.072 0.928 27 H 0.223 0.777 28 H 0.188 0.812 29 H 0.114 0.886 30 H 0.136 0.864 31 H 0.149 0.851 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.201 -13.662 -1.196 14.667 hybrid contribution -0.191 0.798 -0.558 0.992 sum 5.009 -12.864 -1.754 13.916 Atomic orbital electron populations 1.69580 1.07804 1.30089 1.47380 1.26456 0.96454 1.03301 0.95293 0.84676 0.78282 0.75725 0.78412 1.18742 1.19446 1.19414 1.19896 0.93378 0.83107 1.50016 0.88541 1.41597 1.09762 1.04757 1.60639 1.19532 0.88189 0.84917 0.87913 1.90428 1.12955 1.85979 1.55483 1.20353 0.86838 0.86223 0.76613 1.90540 1.14729 1.87900 1.51041 1.47102 1.08276 1.03695 1.69323 1.22566 0.76817 1.06216 0.98241 1.22517 0.98943 0.86367 0.92989 1.86919 1.79068 1.40071 1.31992 1.22192 0.89000 0.87131 1.05494 1.23715 0.97840 1.04636 0.97950 1.23252 1.02774 1.02908 0.92896 0.90680 0.77231 0.87748 0.86392 0.91211 0.92763 0.77705 0.81200 0.88593 0.86360 0.85082 0.91766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.36 13.03 21.77 0.28 -51.08 16 2 C -0.01 -0.71 5.51 85.14 0.47 -0.24 16 3 Si 1.01 42.64 29.56 68.60 2.03 44.67 16 4 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 5 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 6 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 7 C -0.33 -19.41 9.67 84.36 0.82 -18.59 16 8 H 0.10 5.73 7.15 -2.92 -0.02 5.71 16 9 N -0.53 -30.29 5.24 -308.89 -1.62 -31.91 16 10 C 0.41 21.46 7.15 87.08 0.62 22.08 16 11 O -0.56 -29.56 10.47 18.42 0.19 -29.37 16 12 C 0.51 23.45 7.33 87.08 0.64 24.09 16 13 O -0.56 -27.31 12.22 -3.53 -0.04 -27.35 16 14 N -0.55 -19.28 2.80 -800.10 -2.24 -21.52 16 15 C 0.08 2.47 5.64 86.38 0.49 2.96 16 16 C 0.07 1.85 7.35 71.98 0.53 2.38 16 17 O -0.58 -20.44 10.57 -126.83 -1.34 -21.78 16 18 C 0.06 1.74 6.62 44.99 0.30 2.03 16 19 C -0.20 -5.96 9.63 30.62 0.29 -5.67 16 20 C -0.18 -4.82 9.88 30.62 0.30 -4.51 16 21 H 0.28 14.70 8.30 -92.71 -0.77 13.93 16 22 H 0.39 23.13 7.35 -92.71 -0.68 22.45 16 23 H 0.10 4.01 5.04 -11.95 -0.06 3.95 16 24 H 0.12 2.42 8.10 -2.39 -0.02 2.40 16 25 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.05 1.16 8.14 -2.38 -0.02 1.15 16 27 H 0.38 9.80 9.12 -74.06 -0.68 9.13 16 28 H 0.17 2.97 8.14 -2.38 -0.02 2.95 16 29 H 0.10 3.75 5.21 -5.97 -0.03 3.72 16 30 H 0.12 2.63 8.14 -2.39 -0.02 2.61 16 31 H 0.13 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.06 2.17 7.61 -2.39 -0.02 2.15 16 Total: -1.00 -71.85 272.59 1.46 -70.39 By element: Atomic # 1 Polarization: 43.68 SS G_CDS: -0.25 Total: 43.43 kcal Atomic # 6 Polarization: 20.07 SS G_CDS: 4.46 Total: 24.53 kcal Atomic # 7 Polarization: -100.93 SS G_CDS: -3.58 Total: -104.51 kcal Atomic # 8 Polarization: -77.31 SS G_CDS: -1.19 Total: -78.50 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -71.85 1.46 -70.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042480812.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.846 kcal (2) G-P(sol) polarization free energy of solvation -71.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds