Wall clock time and date at job start Mon Mar 30 2020 03:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86793 * 119.99895 * 2 1 4 4 H 1.48505 * 109.47149 * 269.99777 * 3 2 1 5 5 H 1.48498 * 109.47388 * 29.99745 * 3 2 1 6 6 H 1.48501 * 109.46930 * 150.00141 * 3 2 1 7 7 C 1.38953 * 119.99517 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00237 * 0.02562 * 7 2 1 9 9 N 1.37099 * 119.99358 * 179.97438 * 7 2 1 10 10 C 1.34776 * 119.99848 * 179.97438 * 9 7 2 11 11 O 1.21296 * 120.00026 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99978 * 180.02562 * 10 9 7 13 13 N 1.46906 * 109.47109 * 180.02562 * 12 10 9 14 14 C 1.46895 * 110.99789 * 179.97438 * 13 12 10 15 15 H 1.08996 * 109.47174 * 35.00122 * 14 13 12 16 16 C 1.50702 * 109.47352 * 274.99494 * 14 13 12 17 17 O 1.20828 * 119.99892 * 0.02562 * 16 14 13 18 18 O 1.34221 * 120.00141 * 180.02562 * 16 14 13 19 19 C 1.53001 * 109.47097 * 154.99856 * 14 13 12 20 20 C 1.52999 * 117.50154 * 248.74939 * 19 14 13 21 21 C 1.52996 * 117.50160 * 180.08293 * 19 14 13 22 22 H 0.96997 * 120.00211 * 0.02562 * 1 2 3 23 23 H 0.97002 * 120.00385 * 0.02562 * 9 7 2 24 24 H 1.08992 * 109.46894 * 60.00096 * 12 10 9 25 25 H 1.09004 * 109.47113 * 300.00247 * 12 10 9 26 26 H 1.00899 * 110.99484 * 303.95639 * 13 12 10 27 27 H 0.96698 * 116.99961 * 180.02562 * 18 16 14 28 28 H 1.09005 * 115.54835 * 34.41329 * 19 14 13 29 29 H 1.08992 * 117.49586 * 359.97438 * 20 19 14 30 30 H 1.08996 * 117.50111 * 145.01938 * 20 19 14 31 31 H 1.09002 * 117.49886 * 214.97835 * 21 19 14 32 32 H 1.09000 * 117.49812 * 359.97438 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4455 2.6527 0.7000 6 1 3.5456 1.4401 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0005 9 7 3.3798 -1.2034 0.0000 10 6 4.0537 -2.3706 0.0011 11 8 3.4472 -3.4210 0.0020 12 6 5.5607 -2.3706 0.0011 13 7 6.0504 -3.7556 0.0017 14 6 7.5188 -3.7947 0.0011 15 1 7.9047 -2.9626 0.5899 16 6 8.0237 -3.6853 -1.4146 17 8 7.2406 -3.5845 -2.3292 18 8 9.3433 -3.6998 -1.6595 19 6 7.9941 -5.1148 0.6113 20 6 8.6958 -5.0532 1.9695 21 6 9.5034 -5.3480 0.7029 22 1 -0.4850 0.8400 -0.0004 23 1 3.8648 -0.3633 -0.0004 24 1 5.9240 -1.8560 0.8905 25 1 5.9240 -1.8575 -0.8894 26 1 5.6748 -4.2715 0.7833 27 1 9.6192 -3.6265 -2.5834 28 1 7.3625 -5.9801 0.4100 29 1 8.8192 -4.0722 2.4281 30 1 8.5262 -5.8781 2.6615 31 1 9.8648 -6.3667 0.5623 32 1 10.1578 -4.5610 0.3281 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054523431.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:35 Heat of formation + Delta-G solvation = -118.793864 kcal Electronic energy + Delta-G solvation = -17210.769829 eV Core-core repulsion = 14171.419615 eV Total energy + Delta-G solvation = -3039.350214 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.42263 -40.26228 -38.54132 -37.13547 -36.18753 -35.48301 -33.76598 -30.22510 -27.52180 -25.46727 -23.33849 -23.01976 -21.54977 -21.22016 -20.24094 -19.13616 -17.91610 -17.66274 -17.08516 -16.64192 -16.30529 -16.21463 -15.76671 -15.06423 -14.93427 -14.57799 -14.45815 -14.06475 -13.92282 -13.25484 -12.89742 -12.61421 -12.42876 -12.40461 -12.16040 -11.98228 -11.81132 -11.53898 -11.26496 -10.96019 -10.48427 -10.26970 -9.52384 -8.42548 -6.03832 1.28146 1.28773 1.35101 1.43647 1.91365 1.99789 2.22173 2.55022 2.99182 3.13258 3.35344 3.64073 3.96120 4.01641 4.07495 4.20141 4.30671 4.42108 4.50131 4.57973 4.89711 5.06921 5.23317 5.36897 5.49241 5.67921 5.77869 5.94244 6.24080 6.57195 6.85391 7.12813 7.36380 7.92339 8.75147 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.036644 B = 0.005097 C = 0.004904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.930157 B = 5492.218986 C = 5708.640555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.964 3.036 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.229 1.229 7 C -0.331 4.331 8 H 0.055 0.945 9 N -0.589 5.589 10 C 0.451 3.549 11 O -0.612 6.612 12 C 0.063 3.937 13 N -0.672 5.672 14 C 0.135 3.865 15 H 0.109 0.891 16 C 0.483 3.517 17 O -0.540 6.540 18 O -0.503 6.503 19 C -0.182 4.182 20 C -0.160 4.160 21 C -0.151 4.151 22 H 0.280 0.720 23 H 0.390 0.610 24 H 0.093 0.907 25 H 0.098 0.902 26 H 0.365 0.635 27 H 0.423 0.577 28 H 0.106 0.894 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.339 -2.603 3.249 25.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.212 4.212 3 Si 0.784 3.216 4 H -0.185 1.185 5 H -0.196 1.196 6 H -0.153 1.153 7 C -0.460 4.460 8 H 0.074 0.926 9 N -0.231 5.231 10 C 0.239 3.761 11 O -0.496 6.496 12 C -0.069 4.069 13 N -0.309 5.309 14 C 0.024 3.976 15 H 0.126 0.874 16 C 0.324 3.676 17 O -0.428 6.428 18 O -0.316 6.316 19 C -0.201 4.201 20 C -0.197 4.197 21 C -0.188 4.188 22 H 0.089 0.911 23 H 0.225 0.775 24 H 0.110 0.890 25 H 0.116 0.884 26 H 0.188 0.812 27 H 0.285 0.715 28 H 0.124 0.876 29 H 0.126 0.874 30 H 0.125 0.875 31 H 0.123 0.877 32 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 24.345 -3.285 2.732 24.717 hybrid contribution -0.289 1.054 -0.110 1.098 sum 24.056 -2.232 2.621 24.301 Atomic orbital electron populations 1.69801 1.08130 1.29320 1.50116 1.26116 0.96482 1.02699 0.95933 0.85374 0.79610 0.76721 0.79883 1.18463 1.19650 1.15252 1.19021 0.81386 0.95042 1.50546 0.92641 1.42000 1.05902 1.07484 1.67712 1.20785 0.90642 0.83440 0.81270 1.90544 1.71257 1.32750 1.55084 1.21684 0.90339 0.91185 1.03707 1.59368 1.05719 1.13152 1.52615 1.20626 0.87872 1.00079 0.89032 0.87370 1.23748 0.80233 0.71036 0.92547 1.90757 1.58245 1.45973 1.47861 1.84474 1.24346 1.84795 1.38000 1.22143 0.98080 0.96297 1.03537 1.23231 1.01952 1.04495 0.90016 1.23129 0.91034 1.04200 1.00478 0.91060 0.77473 0.88968 0.88433 0.81173 0.71524 0.87583 0.87402 0.87470 0.87675 0.86825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.03 13.96 21.66 0.30 -56.73 16 2 C -0.01 -0.76 5.50 84.93 0.47 -0.30 16 3 Si 0.96 39.37 27.74 68.60 1.90 41.27 16 4 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 5 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 6 H -0.23 -7.80 6.52 99.48 0.65 -7.16 16 7 C -0.33 -19.87 10.16 84.04 0.85 -19.02 16 8 H 0.06 3.96 7.39 -2.91 -0.02 3.94 16 9 N -0.59 -28.78 5.09 -306.98 -1.56 -30.35 16 10 C 0.45 21.32 7.82 87.66 0.69 22.00 16 11 O -0.61 -35.26 15.78 -3.08 -0.05 -35.31 16 12 C 0.06 2.05 5.86 85.56 0.50 2.56 16 13 N -0.67 -21.00 5.46 -499.46 -2.73 -23.73 16 14 C 0.13 2.96 2.77 44.17 0.12 3.09 16 15 H 0.11 1.79 7.56 -2.39 -0.02 1.77 16 16 C 0.48 11.83 7.49 71.24 0.53 12.36 16 17 O -0.54 -18.84 16.68 21.96 0.37 -18.47 16 18 O -0.50 -7.68 11.36 -51.33 -0.58 -8.26 16 19 C -0.18 -3.24 5.09 -10.79 -0.05 -3.30 16 20 C -0.16 -2.00 10.18 30.62 0.31 -1.69 16 21 C -0.15 -1.92 9.45 30.62 0.29 -1.63 16 22 H 0.28 15.58 8.31 -92.71 -0.77 14.81 16 23 H 0.39 15.74 5.76 -92.71 -0.53 15.21 16 24 H 0.09 2.23 8.06 -2.39 -0.02 2.21 16 25 H 0.10 3.09 7.62 -2.38 -0.02 3.07 16 26 H 0.37 11.40 8.06 -89.69 -0.72 10.68 16 27 H 0.42 3.38 9.10 -74.06 -0.67 2.70 16 28 H 0.11 2.21 8.14 -2.38 -0.02 2.19 16 29 H 0.11 1.13 8.05 -2.39 -0.02 1.11 16 30 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.10 1.16 8.14 -2.39 -0.02 1.15 16 32 H 0.11 1.34 6.85 -2.39 -0.02 1.32 16 Total: -1.00 -83.57 282.30 0.55 -83.02 By element: Atomic # 1 Polarization: 35.30 SS G_CDS: -0.81 Total: 34.49 kcal Atomic # 6 Polarization: 10.36 SS G_CDS: 3.71 Total: 14.07 kcal Atomic # 7 Polarization: -106.82 SS G_CDS: -3.99 Total: -110.81 kcal Atomic # 8 Polarization: -61.78 SS G_CDS: -0.27 Total: -62.05 kcal Atomic # 14 Polarization: 39.37 SS G_CDS: 1.90 Total: 41.27 kcal Total: -83.57 0.55 -83.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054523431.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.771 kcal (2) G-P(sol) polarization free energy of solvation -83.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds