Wall clock time and date at job start Mon Mar 30 2020 03:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86805 * 120.00343 * 2 1 4 4 H 1.48500 * 109.47264 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46822 * 300.00258 * 3 2 1 6 6 H 1.48505 * 109.46975 * 59.99906 * 3 2 1 7 7 C 1.38952 * 119.99988 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00411 * 180.02562 * 7 2 1 9 9 N 1.37096 * 120.00106 * 359.97438 * 7 2 1 10 10 C 1.34770 * 120.00165 * 180.02562 * 9 7 2 11 11 O 1.21287 * 120.00412 * 0.02562 * 10 9 7 12 12 C 1.50704 * 119.99944 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.46995 * 180.02562 * 12 10 9 14 14 C 1.46900 * 110.99894 * 179.97438 * 13 12 10 15 15 H 1.09005 * 109.47389 * 324.99770 * 14 13 12 16 16 C 1.50697 * 109.47288 * 84.99960 * 14 13 12 17 17 O 1.20825 * 119.99647 * 0.02562 * 16 14 13 18 18 O 1.34232 * 120.00255 * 179.97438 * 16 14 13 19 19 C 1.53003 * 109.47204 * 205.00143 * 14 13 12 20 20 C 1.53001 * 117.51964 * 111.28382 * 19 14 13 21 21 C 1.52999 * 60.00190 * 107.47982 * 20 19 14 22 22 H 0.97003 * 119.99909 * 359.97438 * 1 2 3 23 23 H 0.97000 * 119.99447 * 0.02562 * 9 7 2 24 24 H 1.08997 * 109.47206 * 59.99563 * 12 10 9 25 25 H 1.08998 * 109.46819 * 299.99864 * 12 10 9 26 26 H 1.00893 * 111.00203 * 303.94948 * 13 12 10 27 27 H 0.96703 * 117.00052 * 179.97438 * 18 16 14 28 28 H 1.09002 * 115.54973 * 325.58166 * 19 14 13 29 29 H 1.09001 * 117.49733 * 214.97413 * 20 19 14 30 30 H 1.08995 * 117.49577 * 359.97438 * 20 19 14 31 31 H 1.09004 * 117.50150 * 252.51496 * 21 20 19 32 32 H 1.09004 * 117.49681 * 107.48417 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3965 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5578 -0.0005 11 8 3.2100 -3.5579 -0.0001 12 6 1.2436 -4.8629 -0.0011 13 7 2.1982 -5.9795 -0.0004 14 6 1.4979 -7.2708 -0.0003 15 1 0.5844 -7.1888 0.5888 16 6 1.1501 -7.6538 -1.4157 17 8 1.4549 -6.9259 -2.3307 18 8 0.5028 -8.8040 -1.6601 19 6 2.4037 -8.3422 0.6101 20 6 1.9998 -8.9195 1.9682 21 6 1.8508 -9.7659 0.7024 22 1 -0.4850 0.8401 0.0004 23 1 0.3533 -2.3906 -0.0005 24 1 0.6173 -4.9204 -0.8913 25 1 0.6167 -4.9208 0.8886 26 1 2.8336 -5.9125 -0.7812 27 1 0.3010 -9.0066 -2.5839 28 1 3.4688 -8.2280 0.4083 29 1 2.7992 -9.1850 2.6600 30 1 1.0889 -8.5357 2.4274 31 1 0.8416 -9.9391 0.3287 32 1 2.5522 -10.5883 0.5614 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054523432.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:38 Heat of formation + Delta-G solvation = -100.366970 kcal Electronic energy + Delta-G solvation = -17163.906493 eV Core-core repulsion = 14125.355329 eV Total energy + Delta-G solvation = -3038.551164 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.61140 -38.26730 -37.47616 -36.36763 -34.57069 -33.72604 -31.21242 -28.85124 -25.71897 -23.87270 -22.58142 -22.21509 -20.44699 -19.25694 -18.26096 -17.88125 -17.11395 -16.28512 -15.83850 -15.32845 -14.85103 -14.42834 -14.24911 -13.88300 -13.65275 -13.26569 -12.71876 -12.16374 -11.82899 -11.66723 -11.61229 -11.51221 -11.36081 -11.06808 -11.00615 -10.44059 -10.32194 -10.20433 -10.07545 -9.50387 -8.61444 -8.24145 -7.94849 -6.39863 -3.80516 2.09810 2.91138 3.18333 3.28684 3.36261 3.66142 3.92251 4.07939 4.26555 4.59309 4.81585 4.92722 5.00000 5.12398 5.26007 5.33392 5.36802 5.60767 5.75632 5.81031 5.93461 6.04735 6.10423 6.24626 6.39532 6.95541 7.46222 7.57591 7.80445 8.07821 8.62607 9.19594 9.55511 10.06689 10.78074 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.043431 B = 0.004665 C = 0.004477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.550452 B = 6000.438695 C = 6252.347912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.298 4.298 8 H 0.104 0.896 9 N -0.563 5.563 10 C 0.445 3.555 11 O -0.582 6.582 12 C 0.043 3.957 13 N -0.632 5.632 14 C 0.128 3.872 15 H 0.115 0.885 16 C 0.450 3.550 17 O -0.512 6.512 18 O -0.514 6.514 19 C -0.140 4.140 20 C -0.165 4.165 21 C -0.174 4.174 22 H 0.271 0.729 23 H 0.392 0.608 24 H 0.050 0.950 25 H 0.089 0.911 26 H 0.364 0.636 27 H 0.402 0.598 28 H 0.115 0.885 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.105 0.895 32 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.215 -17.584 0.602 17.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.180 4.180 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.428 4.428 8 H 0.122 0.878 9 N -0.199 5.199 10 C 0.230 3.770 11 O -0.466 6.466 12 C -0.089 4.089 13 N -0.265 5.265 14 C 0.015 3.985 15 H 0.133 0.867 16 C 0.290 3.710 17 O -0.399 6.399 18 O -0.325 6.325 19 C -0.159 4.159 20 C -0.202 4.202 21 C -0.212 4.212 22 H 0.081 0.919 23 H 0.225 0.775 24 H 0.068 0.932 25 H 0.108 0.892 26 H 0.186 0.814 27 H 0.260 0.740 28 H 0.133 0.867 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.124 0.876 32 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.246 -17.081 1.427 17.186 hybrid contribution -0.759 0.771 -1.617 1.946 sum -2.005 -16.310 -0.190 16.433 Atomic orbital electron populations 1.69621 1.05963 1.28047 1.50724 1.25265 0.95635 0.99731 0.97320 0.85790 0.79732 0.81081 0.77679 1.19186 1.20773 1.20739 1.19768 0.93434 0.82161 1.47413 0.87803 1.41835 1.09202 1.04551 1.64355 1.19621 0.88309 0.84528 0.84522 1.90528 1.13672 1.86987 1.55369 1.21830 0.94553 0.91075 1.01477 1.60510 1.17207 0.97975 1.50848 1.21143 0.98317 0.91107 0.87950 0.86695 1.25241 0.73512 0.77966 0.94330 1.90767 1.50697 1.51646 1.46819 1.84617 1.70840 1.40819 1.36186 1.21982 0.99807 0.92675 1.01437 1.23011 1.03339 1.03198 0.90638 1.23100 1.03169 0.93161 1.01734 0.91932 0.77453 0.93163 0.89241 0.81360 0.73966 0.86674 0.88512 0.88542 0.87637 0.88801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.90 13.05 55.50 0.72 -24.17 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.35 29.55 -169.99 -5.02 16.32 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.30 -8.49 9.68 -14.93 -0.14 -8.64 16 8 H 0.10 3.10 7.16 -52.49 -0.38 2.73 16 9 N -0.56 -14.66 5.29 -10.96 -0.06 -14.72 16 10 C 0.44 10.89 7.82 -10.99 -0.09 10.81 16 11 O -0.58 -16.28 15.78 5.55 0.09 -16.19 16 12 C 0.04 0.80 5.86 -4.97 -0.03 0.77 16 13 N -0.63 -10.72 5.72 -109.22 -0.63 -11.35 16 14 C 0.13 1.64 2.74 -68.86 -0.19 1.45 16 15 H 0.12 1.29 7.56 -51.93 -0.39 0.90 16 16 C 0.45 5.86 7.44 36.00 0.27 6.13 16 17 O -0.51 -8.65 16.07 -18.75 -0.30 -8.95 16 18 O -0.51 -4.79 11.36 -39.26 -0.45 -5.24 16 19 C -0.14 -1.55 5.44 -90.61 -0.49 -2.04 16 20 C -0.16 -1.53 10.18 -26.73 -0.27 -1.80 16 21 C -0.17 -1.52 9.45 -26.73 -0.25 -1.77 16 22 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 23 H 0.39 9.74 7.90 -40.82 -0.32 9.42 16 24 H 0.05 0.90 7.62 -51.93 -0.40 0.51 16 25 H 0.09 1.44 8.05 -51.93 -0.42 1.02 16 26 H 0.36 6.84 7.45 -39.30 -0.29 6.55 16 27 H 0.40 2.26 9.10 45.56 0.41 2.68 16 28 H 0.12 1.35 8.14 -51.93 -0.42 0.93 16 29 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.10 0.84 8.05 -51.93 -0.42 0.43 16 31 H 0.11 0.90 6.85 -51.93 -0.36 0.54 16 32 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 284.73 15.07 4.29 4.29 Total: -1.00 -33.52 284.73 -5.60 -39.13 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -2.96 Total: 15.47 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: -1.29 Total: 5.41 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: 0.04 Total: -50.24 kcal Atomic # 8 Polarization: -29.72 SS G_CDS: -0.66 Total: -30.38 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -33.52 -5.60 -39.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054523432.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.240 kcal (2) G-P(sol) polarization free energy of solvation -33.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds