Wall clock time and date at job start Mon Mar 30 2020 03:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31404 * 1 3 3 Si 1.86805 * 120.00343 * 2 1 4 4 H 1.48500 * 109.47264 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46822 * 300.00258 * 3 2 1 6 6 H 1.48505 * 109.46975 * 59.99906 * 3 2 1 7 7 C 1.38952 * 119.99988 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00411 * 180.02562 * 7 2 1 9 9 N 1.37096 * 120.00106 * 359.97438 * 7 2 1 10 10 C 1.34770 * 120.00165 * 180.02562 * 9 7 2 11 11 O 1.21287 * 120.00412 * 0.02562 * 10 9 7 12 12 C 1.50704 * 119.99944 * 180.02562 * 10 9 7 13 13 N 1.46899 * 109.46995 * 180.02562 * 12 10 9 14 14 C 1.46900 * 110.99894 * 179.97438 * 13 12 10 15 15 H 1.09005 * 109.47389 * 324.99770 * 14 13 12 16 16 C 1.50697 * 109.47288 * 84.99960 * 14 13 12 17 17 O 1.20825 * 119.99647 * 0.02562 * 16 14 13 18 18 O 1.34232 * 120.00255 * 179.97438 * 16 14 13 19 19 C 1.53003 * 109.47204 * 205.00143 * 14 13 12 20 20 C 1.53001 * 117.51964 * 111.28382 * 19 14 13 21 21 C 1.52999 * 60.00190 * 107.47982 * 20 19 14 22 22 H 0.97003 * 119.99909 * 359.97438 * 1 2 3 23 23 H 0.97000 * 119.99447 * 0.02562 * 9 7 2 24 24 H 1.08997 * 109.47206 * 59.99563 * 12 10 9 25 25 H 1.08998 * 109.46819 * 299.99864 * 12 10 9 26 26 H 1.00893 * 111.00203 * 303.94948 * 13 12 10 27 27 H 0.96703 * 117.00052 * 179.97438 * 18 16 14 28 28 H 1.09002 * 115.54973 * 325.58166 * 19 14 13 29 29 H 1.09001 * 117.49733 * 214.97413 * 20 19 14 30 30 H 1.08995 * 117.49577 * 359.97438 * 20 19 14 31 31 H 1.09004 * 117.50150 * 252.51496 * 21 20 19 32 32 H 1.09004 * 117.49681 * 107.48417 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3965 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0001 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5578 -0.0005 11 8 3.2100 -3.5579 -0.0001 12 6 1.2436 -4.8629 -0.0011 13 7 2.1982 -5.9795 -0.0004 14 6 1.4979 -7.2708 -0.0003 15 1 0.5844 -7.1888 0.5888 16 6 1.1501 -7.6538 -1.4157 17 8 1.4549 -6.9259 -2.3307 18 8 0.5028 -8.8040 -1.6601 19 6 2.4037 -8.3422 0.6101 20 6 1.9998 -8.9195 1.9682 21 6 1.8508 -9.7659 0.7024 22 1 -0.4850 0.8401 0.0004 23 1 0.3533 -2.3906 -0.0005 24 1 0.6173 -4.9204 -0.8913 25 1 0.6167 -4.9208 0.8886 26 1 2.8336 -5.9125 -0.7812 27 1 0.3010 -9.0066 -2.5839 28 1 3.4688 -8.2280 0.4083 29 1 2.7992 -9.1850 2.6600 30 1 1.0889 -8.5357 2.4274 31 1 0.8416 -9.9391 0.3287 32 1 2.5522 -10.5883 0.5614 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054523432.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:37 Heat of formation + Delta-G solvation = -127.165529 kcal Electronic energy + Delta-G solvation = -17165.068565 eV Core-core repulsion = 14125.355329 eV Total energy + Delta-G solvation = -3039.713237 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.65306 -40.12173 -38.41802 -37.35679 -36.15909 -35.45059 -33.29679 -30.16611 -27.41985 -25.51430 -23.47050 -22.99812 -21.51267 -21.00091 -19.95874 -19.21420 -18.37142 -17.67111 -16.99635 -16.64866 -16.37507 -16.15980 -15.77807 -15.28558 -14.94245 -14.50729 -14.23488 -13.57083 -13.51931 -13.28393 -12.89592 -12.64871 -12.46982 -12.42159 -12.23370 -12.11580 -12.01558 -11.53792 -11.20922 -10.91808 -10.42568 -10.04537 -9.72036 -8.48506 -5.97636 1.08761 1.36143 1.41540 1.56245 1.99170 2.02752 2.27250 2.62120 3.15186 3.18122 3.40167 3.69871 3.99004 4.06783 4.15344 4.21407 4.41070 4.46293 4.50372 4.57017 4.94015 5.11943 5.28903 5.39572 5.40348 5.52205 5.68638 5.99203 6.05116 6.56667 6.93153 7.09868 7.51720 8.06872 8.69295 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.043431 B = 0.004665 C = 0.004477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.550452 B = 6000.438695 C = 6252.347912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.995 3.005 4 H -0.274 1.274 5 H -0.271 1.271 6 H -0.268 1.268 7 C -0.336 4.336 8 H 0.079 0.921 9 N -0.571 5.571 10 C 0.439 3.561 11 O -0.622 6.622 12 C 0.059 3.941 13 N -0.644 5.644 14 C 0.129 3.871 15 H 0.137 0.863 16 C 0.459 3.541 17 O -0.557 6.557 18 O -0.497 6.497 19 C -0.162 4.162 20 C -0.160 4.160 21 C -0.154 4.154 22 H 0.278 0.722 23 H 0.397 0.603 24 H 0.058 0.942 25 H 0.119 0.881 26 H 0.349 0.651 27 H 0.422 0.578 28 H 0.101 0.899 29 H 0.103 0.897 30 H 0.104 0.896 31 H 0.113 0.887 32 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.292 -18.598 1.118 18.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.212 4.212 3 Si 0.818 3.182 4 H -0.198 1.198 5 H -0.196 1.196 6 H -0.193 1.193 7 C -0.465 4.465 8 H 0.097 0.903 9 N -0.208 5.208 10 C 0.227 3.773 11 O -0.509 6.509 12 C -0.073 4.073 13 N -0.276 5.276 14 C 0.016 3.984 15 H 0.154 0.846 16 C 0.301 3.699 17 O -0.448 6.448 18 O -0.309 6.309 19 C -0.181 4.181 20 C -0.197 4.197 21 C -0.192 4.192 22 H 0.088 0.912 23 H 0.231 0.769 24 H 0.076 0.924 25 H 0.137 0.863 26 H 0.170 0.830 27 H 0.283 0.717 28 H 0.120 0.880 29 H 0.121 0.879 30 H 0.123 0.877 31 H 0.131 0.869 32 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.376 -18.146 1.950 18.405 hybrid contribution -0.455 0.963 -1.786 2.079 sum -2.831 -17.184 0.164 17.416 Atomic orbital electron populations 1.69676 1.06874 1.29341 1.50184 1.26065 0.96566 1.02451 0.96078 0.84845 0.77995 0.76904 0.78409 1.19820 1.19589 1.19329 1.19727 0.92752 0.83963 1.50072 0.90296 1.41899 1.09343 1.04668 1.64873 1.20668 0.88205 0.86028 0.82442 1.90492 1.15781 1.87897 1.56705 1.21686 0.94143 0.88355 1.03136 1.60513 1.17380 0.99318 1.50397 1.21228 0.99222 0.89542 0.88368 0.84598 1.25118 0.72792 0.78146 0.93820 1.90764 1.52715 1.53277 1.48057 1.84543 1.69570 1.38758 1.38000 1.21906 0.98899 0.93804 1.03475 1.23129 1.03781 1.02515 0.90301 1.23162 1.03523 0.91845 1.00624 0.91204 0.76927 0.92418 0.86263 0.82995 0.71658 0.88048 0.87885 0.87723 0.86911 0.87614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.33 13.05 21.66 0.28 -50.05 16 2 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 3 Si 1.00 43.60 29.55 68.60 2.03 45.63 16 4 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 6 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 7 C -0.34 -19.58 9.68 84.04 0.81 -18.77 16 8 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 9 N -0.57 -30.33 5.29 -306.99 -1.62 -31.95 16 10 C 0.44 21.94 7.82 87.66 0.69 22.62 16 11 O -0.62 -36.03 15.78 -3.05 -0.05 -36.08 16 12 C 0.06 2.15 5.86 85.56 0.50 2.65 16 13 N -0.64 -21.71 5.72 -499.46 -2.86 -24.57 16 14 C 0.13 3.09 2.74 44.17 0.12 3.22 16 15 H 0.14 2.67 7.56 -2.38 -0.02 2.65 16 16 C 0.46 11.30 7.44 71.23 0.53 11.83 16 17 O -0.56 -18.68 16.07 21.97 0.35 -18.32 16 18 O -0.50 -7.89 11.36 -51.44 -0.58 -8.48 16 19 C -0.16 -3.31 5.44 -10.79 -0.06 -3.37 16 20 C -0.16 -2.56 10.18 30.59 0.31 -2.25 16 21 C -0.15 -2.24 9.45 30.60 0.29 -1.95 16 22 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 23 H 0.40 19.92 7.90 -92.71 -0.73 19.18 16 24 H 0.06 2.03 7.62 -2.39 -0.02 2.01 16 25 H 0.12 3.62 8.05 -2.39 -0.02 3.60 16 26 H 0.35 13.50 7.45 -89.70 -0.67 12.83 16 27 H 0.42 3.57 9.10 -74.06 -0.67 2.89 16 28 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.10 1.51 8.05 -2.39 -0.02 1.49 16 31 H 0.11 1.50 6.85 -2.39 -0.02 1.49 16 32 H 0.11 1.31 8.14 -2.38 -0.02 1.29 16 Total: -1.00 -73.29 284.73 0.31 -72.98 By element: Atomic # 1 Polarization: 37.92 SS G_CDS: -0.89 Total: 37.03 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: 3.66 Total: 13.81 kcal Atomic # 7 Polarization: -102.36 SS G_CDS: -4.20 Total: -106.56 kcal Atomic # 8 Polarization: -62.60 SS G_CDS: -0.28 Total: -62.88 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -73.29 0.31 -72.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054523432.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.186 kcal (2) G-P(sol) polarization free energy of solvation -73.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds