Wall clock time and date at job start Mon Mar 30 2020 03:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31024 * 1 3 3 Si 1.86798 * 119.99898 * 2 1 4 4 H 1.48508 * 109.46744 * 269.99878 * 3 2 1 5 5 H 1.48501 * 109.47447 * 29.99877 * 3 2 1 6 6 H 1.48499 * 109.46902 * 150.00218 * 3 2 1 7 7 C 1.39584 * 119.99863 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00242 * 180.02562 * 7 2 1 9 9 N 1.36121 * 119.99922 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99923 * 180.02562 * 9 7 2 11 11 O 1.21503 * 119.99892 * 359.97438 * 10 9 7 12 12 C 1.48835 * 119.99868 * 180.27524 * 10 9 7 13 13 O 1.21433 * 119.99754 * 359.72065 * 12 10 9 14 14 N 1.34775 * 119.99729 * 179.72512 * 12 10 9 15 15 C 1.46498 * 119.99689 * 180.02562 * 14 12 10 16 16 C 1.53011 * 109.47025 * 179.97438 * 15 14 12 17 17 H 1.09007 * 110.79919 * 305.69759 * 16 15 14 18 18 C 1.54814 * 110.90514 * 182.07088 * 16 15 14 19 19 C 1.54100 * 104.18374 * 220.91843 * 18 16 15 20 20 O 1.43742 * 107.29472 * 357.96977 * 19 18 16 21 21 C 1.44416 * 107.00144 * 26.48938 * 20 19 18 22 22 H 0.97000 * 119.99293 * 0.02562 * 1 2 3 23 23 H 0.97001 * 120.00350 * 359.97438 * 9 7 2 24 24 H 0.97001 * 119.99927 * 359.97438 * 14 12 10 25 25 H 1.08999 * 109.47273 * 299.98966 * 15 14 12 26 26 H 1.08994 * 109.47567 * 59.99775 * 15 14 12 27 27 H 1.08998 * 110.48939 * 339.59594 * 18 16 15 28 28 H 1.09007 * 110.48509 * 102.11105 * 18 16 15 29 29 H 1.09002 * 109.87719 * 117.39768 * 19 18 16 30 30 H 1.09000 * 109.87970 * 238.54543 * 19 18 16 31 31 H 1.08996 * 110.65833 * 201.47784 * 21 20 19 32 32 H 1.09002 * 110.60312 * 78.46852 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2442 1.6177 0.0000 4 1 2.4917 2.0463 -1.4002 5 1 1.4417 2.6527 0.7000 6 1 3.5418 1.4401 0.7000 7 6 2.0081 -1.2088 0.0005 8 1 3.0880 -1.2089 0.0010 9 7 1.3275 -2.3877 0.0016 10 6 2.0013 -3.5549 0.0026 11 8 3.2164 -3.5549 0.0022 12 6 1.2571 -4.8438 -0.0024 13 8 0.0428 -4.8437 -0.0023 14 7 1.9310 -6.0110 -0.0070 15 6 1.1985 -7.2796 -0.0125 16 6 2.1927 -8.4426 -0.0175 17 1 2.8962 -8.3469 -0.8447 18 6 1.4531 -9.8014 -0.0757 19 6 2.2372 -10.7002 0.9001 20 8 3.3358 -9.9241 1.4070 21 6 2.9407 -8.5368 1.3367 22 1 -0.4849 0.8401 -0.0004 23 1 0.3575 -2.3877 0.0023 24 1 2.9010 -6.0109 -0.0073 25 1 0.5716 -7.3411 0.8771 26 1 0.5721 -7.3337 -0.9029 27 1 0.4208 -9.6884 0.2553 28 1 1.4864 -10.2110 -1.0854 29 1 1.5903 -11.0078 1.7218 30 1 2.6144 -11.5774 0.3744 31 1 3.8160 -7.8872 1.3377 32 1 2.2741 -8.2855 2.1616 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061147045.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:01 Heat of formation + Delta-G solvation = -126.563343 kcal Electronic energy + Delta-G solvation = -16997.543510 eV Core-core repulsion = 13957.856386 eV Total energy + Delta-G solvation = -3039.687124 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.92950 -39.18586 -37.23335 -35.14065 -34.17280 -32.17608 -31.38876 -29.54172 -26.54690 -25.32241 -23.07693 -22.12308 -20.88174 -19.38489 -18.35269 -17.18971 -16.80690 -15.79898 -15.77499 -15.53165 -14.90222 -14.85560 -14.25253 -13.98913 -13.85283 -13.29930 -12.84259 -12.67396 -12.13276 -11.92108 -11.78255 -11.62946 -11.21519 -11.09796 -10.89146 -10.56532 -10.45166 -10.37195 -9.88570 -9.73892 -8.81866 -8.30790 -8.24734 -6.69262 -4.01545 2.41176 3.13681 3.14444 3.19725 3.34263 3.73538 4.03900 4.24599 4.31155 4.50914 4.66413 4.85916 4.96137 5.07758 5.15514 5.18365 5.42212 5.48775 5.57881 5.60746 5.68760 5.79353 5.95808 6.05203 6.63717 6.70207 7.29044 7.64661 7.83335 8.29590 8.58207 8.93683 9.29318 9.82577 10.45542 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.063258 B = 0.004184 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.522531 B = 6690.939853 C = 7001.785224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.031 3.969 3 Si 0.940 3.060 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.306 4.306 8 H 0.113 0.887 9 N -0.498 5.498 10 C 0.393 3.607 11 O -0.598 6.598 12 C 0.514 3.486 13 O -0.546 6.546 14 N -0.717 5.717 15 C 0.131 3.869 16 C -0.135 4.135 17 H 0.095 0.905 18 C -0.148 4.148 19 C 0.047 3.953 20 O -0.379 6.379 21 C 0.049 3.951 22 H 0.281 0.719 23 H 0.405 0.595 24 H 0.410 0.590 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.058 0.942 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.441 -15.159 0.280 15.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.176 4.176 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.437 4.437 8 H 0.131 0.869 9 N -0.132 5.132 10 C 0.177 3.823 11 O -0.487 6.487 12 C 0.298 3.702 13 O -0.423 6.423 14 N -0.371 5.371 15 C 0.007 3.993 16 C -0.154 4.154 17 H 0.113 0.887 18 C -0.186 4.186 19 C -0.030 4.030 20 O -0.298 6.298 21 C -0.027 4.027 22 H 0.091 0.909 23 H 0.240 0.760 24 H 0.246 0.754 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.099 0.901 28 H 0.100 0.900 29 H 0.077 0.923 30 H 0.101 0.899 31 H 0.116 0.884 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.373 -15.097 0.366 15.163 hybrid contribution -0.082 0.811 -0.134 0.826 sum 1.291 -14.285 0.232 14.346 Atomic orbital electron populations 1.69491 1.06536 1.29395 1.45212 1.25598 0.95636 1.00508 0.95850 0.85713 0.79382 0.79613 0.78805 1.19878 1.20501 1.18866 1.19894 0.94007 0.81874 1.47900 0.86933 1.41569 1.10499 1.04242 1.56916 1.18940 0.87820 0.84200 0.91337 1.90582 1.12858 1.86601 1.58643 1.20703 0.87486 0.85901 0.76101 1.90689 1.14082 1.88125 1.49428 1.45666 1.11135 1.04605 1.75729 1.21260 0.93836 0.81525 1.02672 1.23003 0.98169 0.94527 0.99717 0.88685 1.22926 1.00347 0.94323 1.01035 1.23147 0.88769 0.94943 0.96138 1.88880 1.38429 1.17332 1.85189 1.23709 0.99935 0.83304 0.95762 0.90888 0.75995 0.75420 0.91239 0.91097 0.90060 0.90043 0.92339 0.89900 0.88394 0.91613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.15 13.03 55.53 0.72 -22.43 16 2 C 0.03 0.80 5.51 -17.39 -0.10 0.71 16 3 Si 0.94 19.95 29.56 -169.99 -5.02 14.93 16 4 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 5 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 6 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 7 C -0.31 -8.40 9.67 -15.15 -0.15 -8.54 16 8 H 0.11 3.15 7.15 -52.49 -0.38 2.77 16 9 N -0.50 -13.26 5.25 -11.59 -0.06 -13.32 16 10 C 0.39 9.81 7.82 -11.87 -0.09 9.72 16 11 O -0.60 -15.87 16.03 5.36 0.09 -15.79 16 12 C 0.51 10.97 7.87 -11.87 -0.09 10.88 16 13 O -0.55 -12.64 16.47 5.42 0.09 -12.55 16 14 N -0.72 -11.77 5.44 -60.93 -0.33 -12.10 16 15 C 0.13 1.68 5.01 -4.04 -0.02 1.66 16 16 C -0.14 -1.36 3.15 -88.61 -0.28 -1.64 16 17 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 18 C -0.15 -1.20 6.60 -25.20 -0.17 -1.37 16 19 C 0.05 0.41 7.70 37.73 0.29 0.70 16 20 O -0.38 -4.46 11.52 -35.23 -0.41 -4.87 16 21 C 0.05 0.53 7.02 38.21 0.27 0.80 16 22 H 0.28 6.93 8.30 -40.82 -0.34 6.59 16 23 H 0.40 10.85 7.35 -40.82 -0.30 10.55 16 24 H 0.41 6.34 7.88 -40.82 -0.32 6.02 16 25 H 0.07 0.90 8.05 -51.93 -0.42 0.49 16 26 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.08 0.61 7.86 -51.93 -0.41 0.20 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.07 0.71 7.98 -51.93 -0.41 0.29 16 LS Contribution 282.37 15.07 4.26 4.26 Total: -1.00 -31.02 282.37 -4.91 -35.93 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -3.91 Total: 13.02 kcal Atomic # 6 Polarization: 13.25 SS G_CDS: -0.34 Total: 12.91 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: 0.33 Total: -47.85 kcal Atomic # 8 Polarization: -32.97 SS G_CDS: -0.23 Total: -33.20 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -31.02 -4.91 -35.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061147045.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.629 kcal (2) G-P(sol) polarization free energy of solvation -31.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds