Wall clock time and date at job start Mon Mar 30 2020 03:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31024 * 1 3 3 Si 1.86798 * 119.99898 * 2 1 4 4 H 1.48508 * 109.46744 * 269.99878 * 3 2 1 5 5 H 1.48501 * 109.47447 * 29.99877 * 3 2 1 6 6 H 1.48499 * 109.46902 * 150.00218 * 3 2 1 7 7 C 1.39584 * 119.99863 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00242 * 180.02562 * 7 2 1 9 9 N 1.36121 * 119.99922 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99923 * 180.02562 * 9 7 2 11 11 O 1.21503 * 119.99892 * 359.97438 * 10 9 7 12 12 C 1.48835 * 119.99868 * 180.27524 * 10 9 7 13 13 O 1.21433 * 119.99754 * 359.72065 * 12 10 9 14 14 N 1.34775 * 119.99729 * 179.72512 * 12 10 9 15 15 C 1.46498 * 119.99689 * 180.02562 * 14 12 10 16 16 C 1.53011 * 109.47025 * 179.97438 * 15 14 12 17 17 H 1.09007 * 110.79919 * 305.69759 * 16 15 14 18 18 C 1.54814 * 110.90514 * 182.07088 * 16 15 14 19 19 C 1.54100 * 104.18374 * 220.91843 * 18 16 15 20 20 O 1.43742 * 107.29472 * 357.96977 * 19 18 16 21 21 C 1.44416 * 107.00144 * 26.48938 * 20 19 18 22 22 H 0.97000 * 119.99293 * 0.02562 * 1 2 3 23 23 H 0.97001 * 120.00350 * 359.97438 * 9 7 2 24 24 H 0.97001 * 119.99927 * 359.97438 * 14 12 10 25 25 H 1.08999 * 109.47273 * 299.98966 * 15 14 12 26 26 H 1.08994 * 109.47567 * 59.99775 * 15 14 12 27 27 H 1.08998 * 110.48939 * 339.59594 * 18 16 15 28 28 H 1.09007 * 110.48509 * 102.11105 * 18 16 15 29 29 H 1.09002 * 109.87719 * 117.39768 * 19 18 16 30 30 H 1.09000 * 109.87970 * 238.54543 * 19 18 16 31 31 H 1.08996 * 110.65833 * 201.47784 * 21 20 19 32 32 H 1.09002 * 110.60312 * 78.46852 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2442 1.6177 0.0000 4 1 2.4917 2.0463 -1.4002 5 1 1.4417 2.6527 0.7000 6 1 3.5418 1.4401 0.7000 7 6 2.0081 -1.2088 0.0005 8 1 3.0880 -1.2089 0.0010 9 7 1.3275 -2.3877 0.0016 10 6 2.0013 -3.5549 0.0026 11 8 3.2164 -3.5549 0.0022 12 6 1.2571 -4.8438 -0.0024 13 8 0.0428 -4.8437 -0.0023 14 7 1.9310 -6.0110 -0.0070 15 6 1.1985 -7.2796 -0.0125 16 6 2.1927 -8.4426 -0.0175 17 1 2.8962 -8.3469 -0.8447 18 6 1.4531 -9.8014 -0.0757 19 6 2.2372 -10.7002 0.9001 20 8 3.3358 -9.9241 1.4070 21 6 2.9407 -8.5368 1.3367 22 1 -0.4849 0.8401 -0.0004 23 1 0.3575 -2.3877 0.0023 24 1 2.9010 -6.0109 -0.0073 25 1 0.5716 -7.3411 0.8771 26 1 0.5721 -7.3337 -0.9029 27 1 0.4208 -9.6884 0.2553 28 1 1.4864 -10.2110 -1.0854 29 1 1.5903 -11.0078 1.7218 30 1 2.6144 -11.5774 0.3744 31 1 3.8160 -7.8872 1.3377 32 1 2.2741 -8.2855 2.1616 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061147045.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:00 Heat of formation + Delta-G solvation = -151.250189 kcal Electronic energy + Delta-G solvation = -16998.614012 eV Core-core repulsion = 13957.856386 eV Total energy + Delta-G solvation = -3040.757626 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.37889 -40.36612 -39.08976 -36.66862 -35.96987 -33.55112 -33.10990 -30.38349 -28.16637 -26.85066 -24.43150 -23.22150 -21.85913 -21.03045 -20.33863 -18.84825 -17.85018 -17.44192 -16.84835 -16.75366 -16.62969 -16.06632 -15.78590 -15.61989 -15.14226 -14.64081 -14.44770 -13.93918 -13.67331 -13.30549 -12.96504 -12.76626 -12.57838 -12.39813 -12.22340 -12.10213 -11.98482 -11.66545 -11.62751 -10.66792 -10.28573 -10.25366 -10.22848 -8.66260 -6.11175 0.59364 1.41649 1.47463 1.56227 1.80663 2.29417 2.37009 2.94173 3.15247 3.24453 3.54331 3.72613 3.84027 4.02869 4.18429 4.25169 4.34099 4.54682 4.66492 4.78897 4.87142 4.89118 5.03401 5.17682 5.25240 5.29983 5.67791 5.88444 6.14399 6.37399 6.80476 7.00479 7.27783 7.79660 8.49547 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.063258 B = 0.004184 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.522531 B = 6690.939853 C = 7001.785224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C -0.004 4.004 3 Si 1.010 2.990 4 H -0.265 1.265 5 H -0.267 1.267 6 H -0.264 1.264 7 C -0.346 4.346 8 H 0.099 0.901 9 N -0.511 5.511 10 C 0.388 3.612 11 O -0.617 6.617 12 C 0.520 3.480 13 O -0.566 6.566 14 N -0.695 5.695 15 C 0.130 3.870 16 C -0.127 4.127 17 H 0.100 0.900 18 C -0.142 4.142 19 C 0.040 3.960 20 O -0.401 6.401 21 C 0.046 3.954 22 H 0.289 0.711 23 H 0.401 0.599 24 H 0.416 0.584 25 H 0.072 0.928 26 H 0.076 0.924 27 H 0.089 0.911 28 H 0.098 0.902 29 H 0.067 0.933 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.557 -15.893 0.011 15.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.209 4.209 3 Si 0.831 3.169 4 H -0.190 1.190 5 H -0.191 1.191 6 H -0.188 1.188 7 C -0.476 4.476 8 H 0.117 0.883 9 N -0.145 5.145 10 C 0.173 3.827 11 O -0.507 6.507 12 C 0.302 3.698 13 O -0.445 6.445 14 N -0.348 5.348 15 C 0.007 3.993 16 C -0.146 4.146 17 H 0.119 0.881 18 C -0.180 4.180 19 C -0.036 4.036 20 O -0.321 6.321 21 C -0.031 4.031 22 H 0.099 0.901 23 H 0.235 0.765 24 H 0.253 0.747 25 H 0.090 0.910 26 H 0.095 0.905 27 H 0.108 0.892 28 H 0.117 0.883 29 H 0.085 0.915 30 H 0.116 0.884 31 H 0.113 0.887 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.496 -15.879 0.095 15.950 hybrid contribution -0.113 0.888 -0.040 0.896 sum 1.383 -14.991 0.055 15.055 Atomic orbital electron populations 1.69554 1.07824 1.30822 1.45141 1.26539 0.96497 1.03472 0.94352 0.84694 0.78007 0.75026 0.79193 1.18951 1.19143 1.18779 1.19987 0.93713 0.83096 1.50789 0.88298 1.41660 1.10247 1.04816 1.57735 1.19646 0.87890 0.85292 0.89857 1.90550 1.13812 1.87296 1.59022 1.20035 0.86974 0.85928 0.76813 1.90683 1.14551 1.88317 1.50932 1.45642 1.11549 1.04498 1.73086 1.21519 0.94393 0.80316 1.03055 1.22929 0.97712 0.94399 0.99526 0.88133 1.22934 1.00379 0.92660 1.01991 1.23357 0.88362 0.95160 0.96706 1.88861 1.39880 1.17713 1.85607 1.23729 0.99928 0.83304 0.96120 0.90089 0.76463 0.74700 0.90957 0.90532 0.89194 0.88338 0.91508 0.88382 0.88678 0.91775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -47.92 13.03 21.77 0.28 -47.64 16 2 C 0.00 -0.22 5.51 85.14 0.47 0.25 16 3 Si 1.01 40.51 29.56 68.60 2.03 42.54 16 4 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 5 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 6 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 7 C -0.35 -19.39 9.67 84.35 0.82 -18.58 16 8 H 0.10 5.69 7.15 -2.91 -0.02 5.67 16 9 N -0.51 -27.88 5.25 -308.87 -1.62 -29.50 16 10 C 0.39 19.69 7.82 87.08 0.68 20.37 16 11 O -0.62 -33.15 16.03 -3.73 -0.06 -33.21 16 12 C 0.52 22.09 7.87 87.08 0.69 22.77 16 13 O -0.57 -26.04 16.47 -3.51 -0.06 -26.10 16 14 N -0.69 -22.04 5.44 -465.01 -2.53 -24.56 16 15 C 0.13 3.08 5.01 86.38 0.43 3.51 16 16 C -0.13 -2.27 3.15 -9.49 -0.03 -2.30 16 17 H 0.10 1.74 8.14 -2.38 -0.02 1.72 16 18 C -0.14 -1.88 6.60 31.59 0.21 -1.68 16 19 C 0.04 0.60 7.70 72.35 0.56 1.16 16 20 O -0.40 -8.78 11.52 -148.98 -1.72 -10.49 16 21 C 0.05 0.92 7.02 72.66 0.51 1.43 16 22 H 0.29 14.13 8.30 -92.71 -0.77 13.36 16 23 H 0.40 22.10 7.35 -92.71 -0.68 21.42 16 24 H 0.42 12.41 7.88 -92.71 -0.73 11.68 16 25 H 0.07 1.74 8.05 -2.39 -0.02 1.72 16 26 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.09 1.07 7.86 -2.39 -0.02 1.05 16 28 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 29 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.06 1.30 7.98 -2.39 -0.02 1.28 16 Total: -1.00 -66.47 282.37 0.40 -66.07 By element: Atomic # 1 Polarization: 36.21 SS G_CDS: -0.26 Total: 35.95 kcal Atomic # 6 Polarization: 22.60 SS G_CDS: 4.33 Total: 26.93 kcal Atomic # 7 Polarization: -97.83 SS G_CDS: -3.86 Total: -101.70 kcal Atomic # 8 Polarization: -67.97 SS G_CDS: -1.83 Total: -69.80 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 2.03 Total: 42.54 kcal Total: -66.47 0.40 -66.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061147045.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.180 kcal (2) G-P(sol) polarization free energy of solvation -66.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds