Wall clock time and date at job start Mon Mar 30 2020 03:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46980 * 89.99582 * 8 6 4 10 10 H 1.48493 * 109.47135 * 209.99651 * 8 6 4 11 11 H 1.48498 * 109.47274 * 330.00048 * 8 6 4 12 12 N 1.46902 * 109.47094 * 119.99508 * 2 1 3 13 13 C 1.46904 * 110.99913 * 176.04489 * 12 2 1 14 14 C 1.46891 * 111.00371 * 300.00463 * 12 2 1 15 15 C 1.50703 * 109.47378 * 169.99970 * 14 12 2 16 16 N 1.31231 * 122.25541 * 269.70975 * 15 14 12 17 17 N 1.28161 * 118.79752 * 179.78136 * 16 15 14 18 18 S 1.69863 * 106.61410 * 0.44550 * 17 16 15 19 19 C 1.35946 * 122.26081 * 89.99726 * 15 14 12 20 20 N 1.39248 * 127.79027 * 359.94450 * 19 15 14 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 24 24 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 25 25 H 1.09001 * 109.46959 * 60.00498 * 13 12 2 26 26 H 1.09004 * 109.46998 * 180.02562 * 13 12 2 27 27 H 1.09000 * 109.47411 * 300.00539 * 13 12 2 28 28 H 1.09003 * 109.47077 * 289.99597 * 14 12 2 29 29 H 1.08998 * 109.47654 * 49.99459 * 14 12 2 30 30 H 0.97001 * 120.00310 * 359.97438 * 20 19 15 31 31 H 0.97003 * 120.00071 * 180.02562 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3429 -2.1618 -4.4118 10 1 2.4867 -0.1415 -5.1122 11 1 3.6294 -1.7584 -3.7121 12 7 2.0196 -0.6924 1.1995 13 6 3.4851 -0.7945 1.1871 14 6 1.5486 -0.0263 2.4211 15 6 1.8579 -0.8910 3.6160 16 7 1.0145 -1.7893 4.0676 17 7 1.3476 -2.4916 5.0866 18 16 2.8949 -1.9682 5.5524 19 6 3.0271 -0.7893 4.3021 20 7 4.0916 0.0725 4.0510 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5139 0.8900 24 1 0.7089 1.1612 -3.4844 25 1 3.9187 0.2052 1.1592 26 1 3.8209 -1.3116 2.0860 27 1 3.8030 -1.3531 0.3068 28 1 2.0518 0.9346 2.5280 29 1 0.4722 0.1325 2.3564 30 1 4.0464 0.6960 3.3093 31 1 4.8788 0.0489 4.6173 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063089877.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:09 Heat of formation + Delta-G solvation = 76.501917 kcal Electronic energy + Delta-G solvation = -15595.747010 eV Core-core repulsion = 13039.911078 eV Total energy + Delta-G solvation = -2555.835932 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 242.090 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.18642 -37.05375 -35.37965 -32.83001 -30.50880 -29.05944 -26.93788 -25.44624 -24.58460 -23.34425 -20.28497 -19.58299 -18.77102 -16.93654 -16.41061 -15.96313 -15.56312 -14.93731 -14.08300 -13.99650 -13.65492 -12.79686 -12.48368 -12.24257 -12.04889 -11.76059 -11.53907 -11.12575 -11.01678 -10.70294 -10.54408 -10.15601 -10.06438 -9.89622 -9.88710 -9.26260 -8.90823 -8.45001 -8.06914 -7.24104 -6.03348 -4.07986 0.54325 0.95056 1.90146 2.62078 3.29868 3.36437 3.39062 3.48308 4.38925 4.54940 4.79797 5.11237 5.29543 5.66363 5.87952 6.02293 6.17675 6.24593 6.63315 6.67237 6.85291 7.06280 7.10058 7.13424 7.48078 7.67918 7.80650 8.14465 8.19165 8.28717 8.54399 8.97831 9.57109 11.03297 Molecular weight = 242.09amu Principal moments of inertia in cm(-1) A = 0.042830 B = 0.005921 C = 0.005739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.587599 B = 4727.531584 C = 4877.480168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.214 3.786 3 H -0.001 1.001 4 C -0.504 4.504 5 H 0.063 0.937 6 C 0.060 3.940 7 N -0.893 5.893 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.529 5.529 13 C 0.035 3.965 14 C 0.134 3.866 15 C -0.066 4.066 16 N -0.161 5.161 17 N -0.241 5.241 18 S 0.169 5.831 19 C 0.128 3.872 20 N -0.805 5.805 21 H 0.037 0.963 22 H 0.086 0.914 23 H 0.010 0.990 24 H 0.261 0.739 25 H 0.009 0.991 26 H 0.041 0.959 27 H 0.077 0.923 28 H 0.033 0.967 29 H 0.097 0.903 30 H 0.415 0.585 31 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.055 0.539 13.262 15.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.109 3.891 3 H 0.017 0.983 4 C -0.542 4.542 5 H 0.081 0.919 6 C -0.142 4.142 7 N -0.532 5.532 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.200 1.200 12 N -0.254 5.254 13 C -0.113 4.113 14 C 0.002 3.998 15 C -0.217 4.217 16 N -0.029 5.029 17 N -0.220 5.220 18 S 0.299 5.701 19 C -0.117 4.117 20 N -0.352 5.352 21 H 0.056 0.944 22 H 0.104 0.896 23 H 0.029 0.971 24 H 0.070 0.930 25 H 0.027 0.973 26 H 0.060 0.940 27 H 0.096 0.904 28 H 0.051 0.949 29 H 0.115 0.885 30 H 0.249 0.751 31 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 6.098 -1.234 14.258 15.557 hybrid contribution 1.342 1.669 -1.963 2.905 sum 7.440 0.435 12.295 14.377 Atomic orbital electron populations 1.21875 0.97465 1.00052 0.99914 1.19275 0.92571 0.91816 0.85486 0.98329 1.21131 1.31151 1.12274 0.89681 0.91896 1.24918 0.95185 0.95056 0.98994 1.69885 1.36840 1.23004 1.23455 0.86520 0.79205 0.79327 0.82470 1.20597 1.21344 1.20015 1.62094 1.08978 1.52797 1.01553 1.22313 0.89011 0.98660 1.01364 1.20448 1.02612 0.90736 0.85983 1.21540 0.90954 1.04566 1.04683 1.70500 1.27127 1.01512 1.03761 1.82721 1.02273 1.23292 1.13701 1.84692 1.27001 1.27896 1.30484 1.23727 0.92993 0.96505 0.98477 1.41702 1.16534 1.40024 1.36971 0.94362 0.89585 0.97138 0.92953 0.97253 0.94028 0.90391 0.94932 0.88452 0.75125 0.75866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 8.76 37.16 0.33 -2.97 16 2 C 0.21 5.27 2.06 -68.87 -0.14 5.13 16 3 H 0.00 -0.02 8.14 -51.93 -0.42 -0.44 16 4 C -0.50 -13.57 7.93 -34.44 -0.27 -13.84 16 5 H 0.06 1.70 6.39 -52.49 -0.34 1.37 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -25.03 11.32 55.43 0.63 -24.40 16 8 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 N -0.53 -11.19 4.61 -237.73 -1.10 -12.28 16 13 C 0.04 0.66 8.07 60.07 0.48 1.14 16 14 C 0.13 2.43 5.01 -4.98 -0.02 2.40 16 15 C -0.07 -1.10 5.77 -83.67 -0.48 -1.58 16 16 N -0.16 -2.98 11.63 32.79 0.38 -2.60 16 17 N -0.24 -4.09 13.33 60.35 0.80 -3.29 16 18 S 0.17 2.15 23.87 -107.50 -2.57 -0.42 16 19 C 0.13 1.68 6.44 -15.00 -0.10 1.58 16 20 N -0.80 -7.46 8.20 31.28 0.26 -7.21 16 21 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 22 H 0.09 2.28 6.07 -51.93 -0.32 1.96 16 23 H 0.01 0.21 6.20 -51.93 -0.32 -0.11 16 24 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 25 H 0.01 0.16 7.67 -51.93 -0.40 -0.24 16 26 H 0.04 0.68 5.53 -51.93 -0.29 0.40 16 27 H 0.08 1.60 6.23 -51.93 -0.32 1.28 16 28 H 0.03 0.53 7.31 -51.93 -0.38 0.15 16 29 H 0.10 1.86 5.83 -51.93 -0.30 1.56 16 30 H 0.41 3.91 6.73 -40.82 -0.27 3.63 16 31 H 0.41 2.46 8.96 -40.82 -0.37 2.10 16 LS Contribution 264.68 15.07 3.99 3.99 Total: -1.00 -30.19 264.68 -6.21 -36.41 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: -3.28 Total: 0.29 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: -0.30 Total: -6.61 kcal Atomic # 7 Polarization: -50.75 SS G_CDS: 0.97 Total: -49.78 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 2.15 SS G_CDS: -2.57 Total: -0.42 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -30.19 -6.21 -36.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063089877.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.909 kcal (2) G-P(sol) polarization free energy of solvation -30.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds