Wall clock time and date at job start Mon Mar 30 2020 03:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46980 * 89.99582 * 8 6 4 10 10 H 1.48493 * 109.47135 * 209.99651 * 8 6 4 11 11 H 1.48498 * 109.47274 * 330.00048 * 8 6 4 12 12 N 1.46902 * 109.47094 * 119.99508 * 2 1 3 13 13 C 1.46904 * 110.99913 * 176.04489 * 12 2 1 14 14 C 1.46891 * 111.00371 * 300.00463 * 12 2 1 15 15 C 1.50703 * 109.47378 * 169.99970 * 14 12 2 16 16 N 1.31231 * 122.25541 * 269.70975 * 15 14 12 17 17 N 1.28161 * 118.79752 * 179.78136 * 16 15 14 18 18 S 1.69863 * 106.61410 * 0.44550 * 17 16 15 19 19 C 1.35946 * 122.26081 * 89.99726 * 15 14 12 20 20 N 1.39248 * 127.79027 * 359.94450 * 19 15 14 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 24 24 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 25 25 H 1.09001 * 109.46959 * 60.00498 * 13 12 2 26 26 H 1.09004 * 109.46998 * 180.02562 * 13 12 2 27 27 H 1.09000 * 109.47411 * 300.00539 * 13 12 2 28 28 H 1.09003 * 109.47077 * 289.99597 * 14 12 2 29 29 H 1.08998 * 109.47654 * 49.99459 * 14 12 2 30 30 H 0.97001 * 120.00310 * 359.97438 * 20 19 15 31 31 H 0.97003 * 120.00071 * 180.02562 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3429 -2.1618 -4.4118 10 1 2.4867 -0.1415 -5.1122 11 1 3.6294 -1.7584 -3.7121 12 7 2.0196 -0.6924 1.1995 13 6 3.4851 -0.7945 1.1871 14 6 1.5486 -0.0263 2.4211 15 6 1.8579 -0.8910 3.6160 16 7 1.0145 -1.7893 4.0676 17 7 1.3476 -2.4916 5.0866 18 16 2.8949 -1.9682 5.5524 19 6 3.0271 -0.7893 4.3021 20 7 4.0916 0.0725 4.0510 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5139 0.8900 24 1 0.7089 1.1612 -3.4844 25 1 3.9187 0.2052 1.1592 26 1 3.8209 -1.3116 2.0860 27 1 3.8030 -1.3531 0.3068 28 1 2.0518 0.9346 2.5280 29 1 0.4722 0.1325 2.3564 30 1 4.0464 0.6960 3.3093 31 1 4.8788 0.0489 4.6173 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063089877.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:09 Heat of formation + Delta-G solvation = 52.828085 kcal Electronic energy + Delta-G solvation = -15596.773584 eV Core-core repulsion = 13039.911078 eV Total energy + Delta-G solvation = -2556.862506 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 242.090 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.39464 -38.64903 -36.51793 -34.72557 -31.90613 -30.82572 -28.43112 -26.79457 -26.32037 -24.95915 -21.79868 -20.96967 -19.95881 -18.49308 -17.76219 -17.29692 -16.98060 -16.48217 -15.81893 -15.48054 -15.16037 -14.43306 -14.16448 -13.73553 -13.24663 -13.12739 -12.97068 -12.85571 -12.72719 -12.54116 -12.25305 -12.08390 -11.91226 -11.63222 -11.02481 -10.89567 -10.52541 -10.32837 -9.13837 -8.87710 -8.09505 -6.20784 -0.55553 -0.11352 0.80371 1.37085 1.42696 1.45177 1.53697 2.43752 2.57924 3.18802 3.30092 3.47722 3.70936 4.31754 4.50564 4.55471 4.70490 4.73730 4.96987 5.04699 5.09914 5.27571 5.51158 5.72444 5.75382 5.80254 6.27792 6.40152 6.41579 6.72026 6.93188 7.01628 7.48132 8.96022 Molecular weight = 242.09amu Principal moments of inertia in cm(-1) A = 0.042830 B = 0.005921 C = 0.005739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.587599 B = 4727.531584 C = 4877.480168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.220 3.780 3 H -0.023 1.023 4 C -0.518 4.518 5 H 0.057 0.943 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.956 3.044 9 H -0.281 1.281 10 H -0.282 1.282 11 H -0.268 1.268 12 N -0.545 5.545 13 C 0.041 3.959 14 C 0.139 3.861 15 C -0.092 4.092 16 N -0.197 5.197 17 N -0.288 5.288 18 S 0.241 5.759 19 C 0.140 3.860 20 N -0.778 5.778 21 H 0.024 0.976 22 H 0.062 0.938 23 H 0.032 0.968 24 H 0.262 0.738 25 H 0.025 0.975 26 H 0.064 0.936 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.080 0.920 30 H 0.419 0.581 31 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.049 0.584 14.284 16.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.114 3.886 3 H -0.006 1.006 4 C -0.557 4.557 5 H 0.075 0.925 6 C -0.185 4.185 7 N -0.558 5.558 8 Si 0.782 3.218 9 H -0.207 1.207 10 H -0.208 1.208 11 H -0.193 1.193 12 N -0.270 5.270 13 C -0.107 4.107 14 C 0.008 3.992 15 C -0.245 4.245 16 N -0.063 5.063 17 N -0.267 5.267 18 S 0.370 5.630 19 C -0.107 4.107 20 N -0.326 5.326 21 H 0.043 0.957 22 H 0.081 0.919 23 H 0.051 0.949 24 H 0.071 0.929 25 H 0.043 0.957 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.098 0.902 30 H 0.253 0.747 31 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 8.126 -1.183 15.306 17.370 hybrid contribution 0.857 1.706 -2.162 2.884 sum 8.983 0.523 13.144 15.929 Atomic orbital electron populations 1.21707 0.97734 0.99000 0.99809 1.19028 0.92345 0.90619 0.86642 1.00554 1.21405 1.31114 1.12186 0.90955 0.92515 1.25647 0.95403 0.95735 1.01698 1.70000 1.37661 1.24101 1.24025 0.85581 0.78780 0.78224 0.79169 1.20679 1.20805 1.19285 1.61963 1.10559 1.52999 1.01472 1.22255 0.87607 0.99480 1.01373 1.20323 1.01721 0.91833 0.85327 1.21333 0.92486 1.05464 1.05219 1.70506 1.28654 1.02377 1.04758 1.82476 1.05329 1.24601 1.14249 1.84392 1.23987 1.26191 1.28439 1.23797 0.92592 0.96448 0.97892 1.41806 1.15902 1.38204 1.36724 0.95718 0.91946 0.94947 0.92929 0.95655 0.91730 0.92687 0.92872 0.90196 0.74691 0.73485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.19 8.76 71.98 0.63 -5.55 16 2 C 0.22 10.95 2.06 44.17 0.09 11.04 16 3 H -0.02 -1.22 8.14 -2.39 -0.02 -1.24 16 4 C -0.52 -28.12 7.93 25.60 0.20 -27.92 16 5 H 0.06 3.09 6.39 -2.91 -0.02 3.07 16 6 C 0.01 0.76 5.30 84.66 0.45 1.21 16 7 N -0.92 -52.04 11.32 21.45 0.24 -51.79 16 8 Si 0.96 43.37 29.54 68.60 2.03 45.40 16 9 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 12 N -0.54 -22.78 4.61 -906.05 -4.18 -26.96 16 13 C 0.04 1.47 8.07 127.69 1.03 2.50 16 14 C 0.14 4.91 5.01 85.56 0.43 5.34 16 15 C -0.09 -2.93 5.77 42.12 0.24 -2.69 16 16 N -0.20 -7.21 11.63 -50.17 -0.58 -7.79 16 17 N -0.29 -9.54 13.33 37.02 0.49 -9.05 16 18 S 0.24 5.45 23.87 -56.49 -1.35 4.10 16 19 C 0.14 3.27 6.44 82.98 0.53 3.81 16 20 N -0.78 -11.34 8.20 -54.96 -0.45 -11.79 16 21 H 0.02 1.23 8.14 -2.39 -0.02 1.21 16 22 H 0.06 3.39 6.07 -2.39 -0.01 3.37 16 23 H 0.03 1.41 6.20 -2.38 -0.01 1.40 16 24 H 0.26 14.13 8.31 -92.71 -0.77 13.35 16 25 H 0.03 0.81 7.67 -2.39 -0.02 0.79 16 26 H 0.06 1.96 5.53 -2.38 -0.01 1.94 16 27 H 0.05 2.21 6.23 -2.39 -0.01 2.20 16 28 H 0.05 1.63 7.31 -2.39 -0.02 1.61 16 29 H 0.08 3.07 5.83 -2.39 -0.01 3.05 16 30 H 0.42 6.24 6.73 -92.71 -0.62 5.62 16 31 H 0.43 3.12 8.96 -92.71 -0.83 2.29 16 Total: -1.00 -65.85 264.68 -0.46 -66.31 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -0.27 Total: 3.84 kcal Atomic # 6 Polarization: -15.87 SS G_CDS: 3.61 Total: -12.26 kcal Atomic # 7 Polarization: -102.91 SS G_CDS: -4.48 Total: -107.39 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Atomic # 16 Polarization: 5.45 SS G_CDS: -1.35 Total: 4.10 kcal Total: -65.85 -0.46 -66.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063089877.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.134 kcal (2) G-P(sol) polarization free energy of solvation -65.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds