Wall clock time and date at job start Mon Mar 30 2020 03:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47410 * 2 1 4 4 N 1.46502 * 109.47155 * 119.99362 * 2 1 3 5 5 C 1.36607 * 126.00021 * 300.03470 * 4 2 1 6 6 N 1.38904 * 125.99049 * 359.94396 * 5 4 2 7 7 N 1.31025 * 108.02099 * 179.97438 * 5 4 2 8 8 N 1.40105 * 108.00872 * 359.97438 * 7 5 4 9 9 C 1.31085 * 107.98801 * 0.02562 * 8 7 5 10 10 S 1.76193 * 126.00834 * 180.02562 * 9 8 7 11 11 C 1.81394 * 103.00152 * 359.97202 * 10 9 8 12 12 C 1.50708 * 109.47294 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99806 * 359.97438 * 12 11 10 14 14 C 1.37874 * 119.99956 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00062 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99788 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.46973 * 89.99905 * 16 14 12 18 18 H 1.48499 * 109.46950 * 209.99374 * 16 14 12 19 19 H 1.48498 * 109.47216 * 329.99640 * 16 14 12 20 20 H 1.08998 * 109.47203 * 300.00802 * 1 2 3 21 21 H 1.09006 * 109.46630 * 60.00326 * 1 2 3 22 22 H 1.09001 * 109.46839 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47660 * 239.99473 * 2 1 3 24 24 H 1.08996 * 109.47465 * 180.02562 * 3 2 1 25 25 H 1.09006 * 109.46501 * 299.99749 * 3 2 1 26 26 H 1.08998 * 109.47139 * 59.99154 * 3 2 1 27 27 H 0.97001 * 119.99939 * 180.02562 * 6 5 4 28 28 H 0.96994 * 120.00049 * 0.06012 * 6 5 4 29 29 H 1.08996 * 109.47149 * 299.99954 * 11 10 9 30 30 H 1.08996 * 109.47076 * 60.00099 * 11 10 9 31 31 H 0.97001 * 119.99846 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 1.7645 -0.3325 2.4899 6 7 0.9988 0.7509 2.9018 7 7 2.3703 -1.1897 3.2741 8 7 3.0309 -2.1242 2.4659 9 6 2.8072 -1.8065 1.2139 10 16 3.4154 -2.6676 -0.1978 11 6 4.3733 -4.0237 0.5327 12 6 4.9693 -4.8663 -0.5656 13 1 4.7894 -4.6117 -1.5996 14 6 5.7433 -5.9628 -0.2502 15 7 5.9620 -6.2732 1.0089 16 14 6.4826 -7.0068 -1.6115 17 1 7.8221 -6.4757 -1.9706 18 1 6.6158 -8.4095 -1.1427 19 1 5.5978 -6.9651 -2.8033 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0277 0.0005 23 1 1.8934 -0.5139 -0.8899 24 1 3.1300 1.4425 -0.0005 25 1 1.6767 1.9563 -0.8901 26 1 1.6767 1.9564 0.8899 27 1 0.8752 0.9256 3.8479 28 1 0.5875 1.3323 2.2434 29 1 5.1727 -3.6129 1.1493 30 1 3.7189 -4.6398 1.1493 31 1 6.5069 -7.0444 1.2307 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070601881.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:22 Heat of formation + Delta-G solvation = 73.062351 kcal Electronic energy + Delta-G solvation = -15115.868215 eV Core-core repulsion = 12559.883133 eV Total energy + Delta-G solvation = -2555.985082 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 242.090 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.51102 -36.18105 -34.41883 -33.17378 -30.65342 -29.11092 -28.40830 -27.58812 -23.20713 -22.72668 -22.25507 -20.43172 -17.60313 -16.69905 -16.39296 -15.97310 -15.61741 -15.22299 -14.57989 -14.37167 -13.43802 -13.04807 -12.75830 -12.65486 -12.40277 -12.35988 -11.68866 -11.57782 -11.18853 -10.89444 -10.84645 -10.62710 -10.42266 -10.20460 -9.66763 -9.47723 -9.18071 -8.70621 -8.40796 -6.78859 -6.18442 -4.26738 1.78148 2.45288 2.72286 3.08844 3.26626 3.32310 3.34782 3.52211 3.60968 4.34041 4.38926 4.68439 4.87402 5.16685 5.17866 5.18321 5.37073 5.47558 5.63048 5.71876 5.74987 5.88390 6.38252 6.68476 7.13920 7.24331 7.38090 7.54866 7.69571 7.94319 8.69396 8.74131 9.36504 10.92031 Molecular weight = 242.09amu Principal moments of inertia in cm(-1) A = 0.042534 B = 0.005701 C = 0.005206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.136168 B = 4910.227122 C = 5377.295284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.124 3.876 3 C -0.164 4.164 4 N -0.506 5.506 5 C 0.473 3.527 6 N -0.837 5.837 7 N -0.378 5.378 8 N -0.305 5.305 9 C 0.217 3.783 10 S -0.070 6.070 11 C 0.084 3.916 12 C -0.524 4.524 13 H 0.068 0.932 14 C 0.071 3.929 15 N -0.882 5.882 16 Si 0.909 3.091 17 H -0.277 1.277 18 H -0.283 1.283 19 H -0.271 1.271 20 H 0.059 0.941 21 H 0.079 0.921 22 H 0.068 0.932 23 H 0.112 0.888 24 H 0.068 0.932 25 H 0.079 0.921 26 H 0.059 0.941 27 H 0.418 0.582 28 H 0.403 0.597 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.912 15.438 -3.194 19.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.020 3.980 3 C -0.222 4.222 4 N -0.214 5.214 5 C 0.107 3.893 6 N -0.398 5.398 7 N -0.217 5.217 8 N -0.137 5.137 9 C -0.164 4.164 10 S 0.157 5.843 11 C -0.063 4.063 12 C -0.565 4.565 13 H 0.086 0.914 14 C -0.135 4.135 15 N -0.518 5.518 16 Si 0.735 3.265 17 H -0.203 1.203 18 H -0.209 1.209 19 H -0.195 1.195 20 H 0.078 0.922 21 H 0.098 0.902 22 H 0.087 0.913 23 H 0.130 0.870 24 H 0.087 0.913 25 H 0.098 0.902 26 H 0.078 0.922 27 H 0.250 0.750 28 H 0.235 0.765 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.373 14.669 -2.788 18.181 hybrid contribution -0.157 0.237 -0.274 0.395 sum -10.530 14.906 -3.062 18.505 Atomic orbital electron populations 1.22219 0.93646 1.03647 1.02735 1.21460 0.95120 0.93911 0.87527 1.22218 1.02844 0.94450 1.02734 1.46321 1.44613 1.24889 1.05615 1.20835 0.94893 0.91862 0.81674 1.41193 1.58491 1.29156 1.10912 1.78053 1.17596 1.05355 1.20740 1.78324 1.19923 1.17898 0.97540 1.26730 0.97545 0.90875 1.01287 1.85189 1.62796 1.33475 1.02824 1.21371 0.96112 0.89819 0.99040 1.20561 1.32671 1.11091 0.92129 0.91380 1.24939 0.95647 0.96847 0.96041 1.69989 1.37718 1.27346 1.16785 0.86325 0.79518 0.79221 0.81392 1.20273 1.20883 1.19523 0.92226 0.90216 0.91282 0.87005 0.91283 0.90224 0.92221 0.74964 0.76533 0.93029 0.93018 0.92259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 9.19 37.16 0.34 -1.12 16 2 C 0.12 1.44 3.39 -67.93 -0.23 1.21 16 3 C -0.16 -1.47 9.19 37.16 0.34 -1.12 16 4 N -0.51 -8.30 2.64 -110.35 -0.29 -8.59 16 5 C 0.47 7.76 8.49 -318.43 -2.70 5.06 16 6 N -0.84 -8.72 8.41 30.37 0.26 -8.47 16 7 N -0.38 -8.01 12.72 30.38 0.39 -7.62 16 8 N -0.30 -7.29 12.29 30.67 0.38 -6.92 16 9 C 0.22 4.56 8.10 -88.37 -0.72 3.85 16 10 S -0.07 -1.50 21.05 -107.50 -2.26 -3.77 16 11 C 0.08 2.23 5.33 36.01 0.19 2.43 16 12 C -0.52 -14.48 9.13 -34.44 -0.31 -14.80 16 13 H 0.07 1.81 7.71 -52.49 -0.40 1.41 16 14 C 0.07 1.97 5.46 -17.82 -0.10 1.87 16 15 N -0.88 -25.97 13.29 55.43 0.74 -25.24 16 16 Si 0.91 20.98 29.54 -169.99 -5.02 15.96 16 17 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 20 H 0.06 0.47 5.88 -51.93 -0.31 0.16 16 21 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 22 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 23 H 0.11 1.37 7.15 -51.93 -0.37 1.00 16 24 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.47 5.89 -51.93 -0.31 0.16 16 27 H 0.42 3.65 8.95 -40.82 -0.37 3.29 16 28 H 0.40 3.02 5.05 -40.82 -0.21 2.82 16 29 H 0.05 1.48 8.14 -51.93 -0.42 1.06 16 30 H 0.05 1.48 8.14 -51.93 -0.42 1.06 16 31 H 0.27 7.37 8.31 -40.82 -0.34 7.04 16 LS Contribution 277.34 15.07 4.18 4.18 Total: -1.00 -33.50 277.34 -8.46 -41.96 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -3.63 Total: 1.13 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -3.19 Total: -2.63 kcal Atomic # 7 Polarization: -58.30 SS G_CDS: 1.46 Total: -56.83 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: -1.50 SS G_CDS: -2.26 Total: -3.77 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -33.50 -8.46 -41.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070601881.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.019 kcal (2) G-P(sol) polarization free energy of solvation -33.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds