Wall clock time and date at job start Mon Mar 30 2020 03:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.47491 * 2 1 4 4 C 1.36764 * 127.14197 * 89.99804 * 3 2 1 5 5 C 1.50697 * 126.33726 * 0.03985 * 4 3 2 6 6 N 1.46905 * 109.47110 * 269.70877 * 5 4 3 7 7 N 1.30297 * 107.31567 * 179.77554 * 4 3 2 8 8 N 1.28521 * 110.08315 * 0.22642 * 7 4 3 9 9 C 1.31284 * 109.85329 * 0.02562 * 8 7 4 10 10 S 1.76202 * 126.48054 * 179.97438 * 9 8 7 11 11 C 1.81000 * 100.00355 * 359.97438 * 10 9 8 12 12 C 1.50692 * 109.47197 * 180.02562 * 11 10 9 13 13 H 1.07998 * 120.00606 * 359.97438 * 12 11 10 14 14 C 1.37878 * 119.99858 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99752 * 179.97438 * 14 12 11 16 16 Si 1.86799 * 120.00051 * 359.97438 * 14 12 11 17 17 H 1.48507 * 109.47108 * 90.00257 * 16 14 12 18 18 H 1.48499 * 109.47021 * 209.99976 * 16 14 12 19 19 H 1.48497 * 109.47321 * 330.00379 * 16 14 12 20 20 H 1.08999 * 109.47166 * 179.97438 * 1 2 3 21 21 H 1.09005 * 109.46765 * 299.99637 * 1 2 3 22 22 H 1.08995 * 109.47328 * 59.99346 * 1 2 3 23 23 H 1.09005 * 109.46765 * 240.00363 * 2 1 3 24 24 H 1.08995 * 109.47328 * 120.00654 * 2 1 3 25 25 H 1.09002 * 109.47000 * 149.70873 * 5 4 3 26 26 H 1.08995 * 109.47308 * 29.71014 * 5 4 3 27 27 H 1.00901 * 110.99869 * 180.02562 * 6 5 4 28 28 H 1.00896 * 110.99543 * 303.95619 * 6 5 4 29 29 H 1.08999 * 109.46612 * 299.99925 * 11 10 9 30 30 H 1.08997 * 109.46779 * 59.99516 * 11 10 9 31 31 H 0.97003 * 119.99686 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2936 2.1597 1.0902 5 6 2.1515 1.7554 2.5350 6 7 0.8016 2.0915 3.0070 7 7 2.7069 3.3137 0.6483 8 7 2.7073 3.3197 -0.6369 9 6 2.2900 2.1596 -1.0883 10 16 2.1194 1.6932 -2.7789 11 6 2.6653 3.2202 -3.5829 12 6 2.6009 3.0509 -5.0789 13 1 2.2650 2.1161 -5.5027 14 6 2.9720 4.0892 -5.9068 15 7 2.9163 3.9413 -7.2124 16 14 3.5537 5.7060 -5.1739 17 1 5.0257 5.6614 -4.9824 18 1 3.2077 6.8193 -6.0937 19 1 2.8903 5.9224 -3.8631 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 1.8932 -0.5138 -0.8901 24 1 1.8933 -0.5139 0.8899 25 1 2.8893 2.2876 3.1354 26 1 2.3126 0.6816 2.6293 27 1 0.6813 1.8303 3.9741 28 1 0.6042 3.0714 2.8700 29 1 2.0148 4.0416 -3.2823 30 1 3.6904 3.4410 -3.2856 31 1 3.1770 4.6719 -7.7948 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070601884.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:28 Heat of formation + Delta-G solvation = 67.847431 kcal Electronic energy + Delta-G solvation = -15075.162796 eV Core-core repulsion = 12518.951577 eV Total energy + Delta-G solvation = -2556.211218 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 242.090 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.57831 -35.76172 -34.92517 -33.09251 -30.46930 -30.31428 -29.34163 -25.65697 -24.07548 -22.73093 -22.07857 -20.35847 -17.65206 -16.93821 -16.52072 -15.96386 -15.78207 -14.57901 -14.44757 -14.34793 -13.93408 -13.34502 -13.15876 -12.85179 -12.68840 -12.42736 -12.25246 -11.45401 -11.20859 -10.85933 -10.77611 -10.34359 -10.13467 -10.02378 -9.79510 -9.57869 -9.31359 -9.09379 -8.71931 -6.99878 -6.22020 -4.26941 1.72610 1.89517 2.81200 3.07422 3.19692 3.30295 3.38303 3.45335 4.21313 4.34198 4.45272 4.53235 4.78931 4.91571 5.09891 5.11542 5.19775 5.49854 5.54572 5.67976 6.02923 6.08513 6.26940 6.65620 6.68495 6.72505 6.93585 7.07956 7.35121 8.20606 8.74116 8.95545 9.33661 10.89000 Molecular weight = 242.09amu Principal moments of inertia in cm(-1) A = 0.037555 B = 0.006282 C = 0.005566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.388674 B = 4456.271910 C = 5029.240243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.107 3.893 3 N -0.457 5.457 4 C 0.162 3.838 5 C 0.157 3.843 6 N -0.845 5.845 7 N -0.286 5.286 8 N -0.299 5.299 9 C 0.174 3.826 10 S -0.017 6.017 11 C 0.034 3.966 12 C -0.526 4.526 13 H 0.084 0.916 14 C 0.088 3.912 15 N -0.888 5.888 16 Si 0.874 3.126 17 H -0.271 1.271 18 H -0.282 1.282 19 H -0.258 1.258 20 H 0.075 0.925 21 H 0.074 0.926 22 H 0.067 0.933 23 H 0.097 0.903 24 H 0.091 0.909 25 H 0.062 0.938 26 H 0.087 0.913 27 H 0.348 0.652 28 H 0.351 0.649 29 H 0.052 0.948 30 H 0.047 0.953 31 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.589 -8.200 18.781 20.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.015 4.015 3 N -0.152 5.152 4 C -0.109 4.109 5 C 0.024 3.976 6 N -0.377 5.377 7 N -0.128 5.128 8 N -0.143 5.143 9 C -0.200 4.200 10 S 0.212 5.788 11 C -0.114 4.114 12 C -0.565 4.565 13 H 0.102 0.898 14 C -0.118 4.118 15 N -0.525 5.525 16 Si 0.700 3.300 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.182 1.182 20 H 0.094 0.906 21 H 0.093 0.907 22 H 0.086 0.914 23 H 0.115 0.885 24 H 0.110 0.890 25 H 0.080 0.920 26 H 0.105 0.895 27 H 0.162 0.838 28 H 0.164 0.836 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.657 -8.244 17.575 19.753 hybrid contribution 0.784 1.305 1.417 2.080 sum -2.873 -6.939 18.992 20.423 Atomic orbital electron populations 1.22151 0.93352 1.03127 1.04179 1.21847 0.96485 0.78736 1.04467 1.46439 1.50248 1.13672 1.04858 1.24626 1.04966 0.89652 0.91612 1.19860 0.91076 1.00968 0.85683 1.58662 1.26442 1.26535 1.26084 1.73868 1.17609 1.17268 1.04008 1.74755 1.20720 1.16692 1.02168 1.27518 1.03720 0.91438 0.97302 1.85512 1.82912 1.26455 0.83920 1.21668 1.00036 0.90572 0.99149 1.20371 1.47584 1.02524 0.86045 0.89814 1.24763 0.94175 0.98369 0.94511 1.69856 1.46856 1.33137 1.02636 0.86837 0.80036 0.83141 0.80020 1.19686 1.20776 1.18167 0.90642 0.90717 0.91394 0.88502 0.89023 0.91951 0.89489 0.83840 0.83615 0.92976 0.93484 0.92048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.75 10.24 37.16 0.38 -1.37 16 2 C 0.11 1.20 6.60 -4.04 -0.03 1.17 16 3 N -0.46 -7.16 2.81 -113.54 -0.32 -7.48 16 4 C 0.16 2.48 7.58 -153.99 -1.17 1.32 16 5 C 0.16 1.55 7.16 -4.97 -0.04 1.52 16 6 N -0.84 -7.21 9.61 -11.41 -0.11 -7.32 16 7 N -0.29 -5.59 12.17 33.00 0.40 -5.19 16 8 N -0.30 -6.63 11.60 30.68 0.36 -6.28 16 9 C 0.17 3.46 8.07 -88.34 -0.71 2.75 16 10 S -0.02 -0.35 21.73 -107.50 -2.34 -2.69 16 11 C 0.03 0.85 4.06 36.00 0.15 1.00 16 12 C -0.53 -14.80 9.68 -34.44 -0.33 -15.13 16 13 H 0.08 2.50 7.95 -52.49 -0.42 2.09 16 14 C 0.09 2.51 5.47 -17.82 -0.10 2.41 16 15 N -0.89 -26.58 13.96 55.43 0.77 -25.81 16 16 Si 0.87 21.68 27.47 -169.99 -4.67 17.02 16 17 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 20 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 21 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 22 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.10 1.07 7.87 -51.93 -0.41 0.66 16 24 H 0.09 0.76 7.25 -51.93 -0.38 0.38 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.09 0.68 7.26 -51.93 -0.38 0.30 16 27 H 0.35 1.92 9.08 -39.29 -0.36 1.56 16 28 H 0.35 3.31 8.98 -39.29 -0.35 2.96 16 29 H 0.05 1.34 7.20 -51.92 -0.37 0.97 16 30 H 0.05 1.19 7.57 -51.92 -0.39 0.80 16 31 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 283.00 15.07 4.26 4.26 Total: -1.00 -33.11 283.00 -7.40 -40.51 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: -3.91 Total: -0.68 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: -1.85 Total: -6.34 kcal Atomic # 7 Polarization: -53.18 SS G_CDS: 1.10 Total: -52.08 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.02 kcal Atomic # 16 Polarization: -0.35 SS G_CDS: -2.34 Total: -2.69 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -33.11 -7.40 -40.51 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070601884.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.360 kcal (2) G-P(sol) polarization free energy of solvation -33.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds