Wall clock time and date at job start Mon Mar 30 2020 03:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.47491 * 2 1 4 4 C 1.36764 * 127.14197 * 89.99804 * 3 2 1 5 5 C 1.50697 * 126.33726 * 0.03985 * 4 3 2 6 6 N 1.46905 * 109.47110 * 269.70877 * 5 4 3 7 7 N 1.30297 * 107.31567 * 179.77554 * 4 3 2 8 8 N 1.28521 * 110.08315 * 0.22642 * 7 4 3 9 9 C 1.31284 * 109.85329 * 0.02562 * 8 7 4 10 10 S 1.76202 * 126.48054 * 179.97438 * 9 8 7 11 11 C 1.81000 * 100.00355 * 359.97438 * 10 9 8 12 12 C 1.50692 * 109.47197 * 180.02562 * 11 10 9 13 13 H 1.07998 * 120.00606 * 359.97438 * 12 11 10 14 14 C 1.37878 * 119.99858 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99752 * 179.97438 * 14 12 11 16 16 Si 1.86799 * 120.00051 * 359.97438 * 14 12 11 17 17 H 1.48507 * 109.47108 * 90.00257 * 16 14 12 18 18 H 1.48499 * 109.47021 * 209.99976 * 16 14 12 19 19 H 1.48497 * 109.47321 * 330.00379 * 16 14 12 20 20 H 1.08999 * 109.47166 * 179.97438 * 1 2 3 21 21 H 1.09005 * 109.46765 * 299.99637 * 1 2 3 22 22 H 1.08995 * 109.47328 * 59.99346 * 1 2 3 23 23 H 1.09005 * 109.46765 * 240.00363 * 2 1 3 24 24 H 1.08995 * 109.47328 * 120.00654 * 2 1 3 25 25 H 1.09002 * 109.47000 * 149.70873 * 5 4 3 26 26 H 1.08995 * 109.47308 * 29.71014 * 5 4 3 27 27 H 1.00901 * 110.99869 * 180.02562 * 6 5 4 28 28 H 1.00896 * 110.99543 * 303.95619 * 6 5 4 29 29 H 1.08999 * 109.46612 * 299.99925 * 11 10 9 30 30 H 1.08997 * 109.46779 * 59.99516 * 11 10 9 31 31 H 0.97003 * 119.99686 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2936 2.1597 1.0902 5 6 2.1515 1.7554 2.5350 6 7 0.8016 2.0915 3.0070 7 7 2.7069 3.3137 0.6483 8 7 2.7073 3.3197 -0.6369 9 6 2.2900 2.1596 -1.0883 10 16 2.1194 1.6932 -2.7789 11 6 2.6653 3.2202 -3.5829 12 6 2.6009 3.0509 -5.0789 13 1 2.2650 2.1161 -5.5027 14 6 2.9720 4.0892 -5.9068 15 7 2.9163 3.9413 -7.2124 16 14 3.5537 5.7060 -5.1739 17 1 5.0257 5.6614 -4.9824 18 1 3.2077 6.8193 -6.0937 19 1 2.8903 5.9224 -3.8631 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 1.8932 -0.5138 -0.8901 24 1 1.8933 -0.5139 0.8899 25 1 2.8893 2.2876 3.1354 26 1 2.3126 0.6816 2.6293 27 1 0.6813 1.8303 3.9741 28 1 0.6042 3.0714 2.8700 29 1 2.0148 4.0416 -3.2823 30 1 3.6904 3.4410 -3.2856 31 1 3.1770 4.6719 -7.7948 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070601884.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:28 Heat of formation + Delta-G solvation = 43.904065 kcal Electronic energy + Delta-G solvation = -15076.201058 eV Core-core repulsion = 12518.951577 eV Total energy + Delta-G solvation = -2557.249480 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 242.090 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.93105 -36.87351 -35.77294 -35.27267 -31.81400 -31.52483 -31.22122 -26.67433 -25.12516 -24.69982 -23.50304 -21.52238 -19.30781 -18.63953 -17.78660 -17.17607 -16.82995 -16.38737 -15.60987 -15.44957 -15.22019 -14.79508 -14.67494 -14.36514 -14.09152 -13.64561 -13.22304 -12.85643 -12.75352 -12.42251 -12.27599 -12.24815 -11.86480 -11.65912 -11.31356 -11.15976 -11.01742 -10.86950 -9.78190 -8.62497 -8.43436 -6.53330 0.17594 0.58416 1.27769 1.32113 1.39586 1.47857 1.65475 1.70206 2.26183 2.90557 3.25309 3.61665 3.69466 3.92598 4.05348 4.26057 4.33142 4.49795 4.63835 4.66415 4.66853 4.72263 4.90323 5.08736 5.23102 5.26423 5.79025 5.97634 5.98078 6.49051 6.51391 7.11143 7.55622 8.71066 Molecular weight = 242.09amu Principal moments of inertia in cm(-1) A = 0.037555 B = 0.006282 C = 0.005566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.388674 B = 4456.271910 C = 5029.240243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.095 3.905 3 N -0.449 5.449 4 C 0.187 3.813 5 C 0.159 3.841 6 N -0.845 5.845 7 N -0.328 5.328 8 N -0.342 5.342 9 C 0.152 3.848 10 S 0.011 5.989 11 C 0.033 3.967 12 C -0.533 4.533 13 H 0.055 0.945 14 C 0.039 3.961 15 N -0.927 5.927 16 Si 0.936 3.064 17 H -0.263 1.263 18 H -0.270 1.270 19 H -0.260 1.260 20 H 0.107 0.893 21 H 0.072 0.928 22 H 0.039 0.961 23 H 0.097 0.903 24 H 0.133 0.867 25 H 0.075 0.925 26 H 0.119 0.881 27 H 0.368 0.632 28 H 0.345 0.655 29 H 0.041 0.959 30 H 0.040 0.960 31 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.774 -9.237 21.544 23.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.025 4.025 3 N -0.143 5.143 4 C -0.084 4.084 5 C 0.026 3.974 6 N -0.379 5.379 7 N -0.168 5.168 8 N -0.186 5.186 9 C -0.224 4.224 10 S 0.239 5.761 11 C -0.116 4.116 12 C -0.572 4.572 13 H 0.073 0.927 14 C -0.164 4.164 15 N -0.565 5.565 16 Si 0.759 3.241 17 H -0.188 1.188 18 H -0.194 1.194 19 H -0.184 1.184 20 H 0.125 0.875 21 H 0.091 0.909 22 H 0.059 0.941 23 H 0.115 0.885 24 H 0.151 0.849 25 H 0.093 0.907 26 H 0.137 0.863 27 H 0.185 0.815 28 H 0.158 0.842 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.854 -9.312 20.366 22.723 hybrid contribution 0.776 1.480 0.703 1.813 sum -3.078 -7.832 21.069 22.688 Atomic orbital electron populations 1.22114 0.92521 1.04747 1.02669 1.22334 0.97135 0.76512 1.06548 1.46749 1.49081 1.14867 1.03555 1.25670 1.01087 0.88156 0.93526 1.20150 0.92199 1.03003 0.82075 1.58619 1.25333 1.26213 1.27751 1.73779 1.20240 1.19766 1.03055 1.74638 1.21870 1.18237 1.03812 1.27216 1.05406 0.92188 0.97589 1.85114 1.83179 1.23101 0.84678 1.21342 0.99539 0.93037 0.97667 1.20527 1.47150 1.01544 0.87976 0.92659 1.25570 0.94213 1.01765 0.94804 1.69957 1.48039 1.34561 1.03937 0.85869 0.79813 0.79279 0.79182 1.18790 1.19448 1.18382 0.87461 0.90881 0.94143 0.88470 0.84944 0.90726 0.86287 0.81514 0.84248 0.94101 0.94176 0.91519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 10.24 71.98 0.74 -2.14 16 2 C 0.10 1.81 6.60 86.38 0.57 2.38 16 3 N -0.45 -13.15 2.81 -513.13 -1.44 -14.59 16 4 C 0.19 5.32 7.58 137.63 1.04 6.37 16 5 C 0.16 2.52 7.16 85.56 0.61 3.13 16 6 N -0.84 -11.46 9.61 -190.00 -1.83 -13.28 16 7 N -0.33 -12.57 12.17 -49.52 -0.60 -13.18 16 8 N -0.34 -15.19 11.60 -56.85 -0.66 -15.85 16 9 C 0.15 5.99 8.07 179.55 1.45 7.44 16 10 S 0.01 0.45 21.73 -56.49 -1.23 -0.78 16 11 C 0.03 1.69 4.06 71.23 0.29 1.98 16 12 C -0.53 -30.85 9.68 25.60 0.25 -30.60 16 13 H 0.06 3.44 7.95 -2.91 -0.02 3.41 16 14 C 0.04 2.25 5.47 84.65 0.46 2.71 16 15 N -0.93 -56.51 13.96 21.45 0.30 -56.21 16 16 Si 0.94 45.32 27.47 68.60 1.88 47.21 16 17 H -0.26 -12.32 7.11 99.48 0.71 -11.61 16 18 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 19 H -0.26 -12.58 6.54 99.48 0.65 -11.93 16 20 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 21 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 22 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.10 1.89 7.87 -2.38 -0.02 1.87 16 24 H 0.13 1.49 7.25 -2.39 -0.02 1.47 16 25 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.12 1.18 7.26 -2.39 -0.02 1.16 16 27 H 0.37 2.59 9.08 -89.69 -0.81 1.78 16 28 H 0.35 5.65 8.98 -89.70 -0.81 4.85 16 29 H 0.04 2.15 7.20 -2.40 -0.02 2.13 16 30 H 0.04 2.07 7.57 -2.40 -0.02 2.05 16 31 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -74.00 283.00 1.32 -72.68 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: -0.52 Total: 2.73 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: 5.41 Total: -8.72 kcal Atomic # 7 Polarization: -108.88 SS G_CDS: -4.23 Total: -113.11 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.88 Total: 47.21 kcal Atomic # 16 Polarization: 0.45 SS G_CDS: -1.23 Total: -0.78 kcal Total: -74.00 1.32 -72.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070601884.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.586 kcal (2) G-P(sol) polarization free energy of solvation -74.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds