Wall clock time and date at job start Mon Mar 30 2020 03:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47350 * 2 1 4 4 N 1.46499 * 109.47010 * 179.97438 * 3 2 1 5 5 C 1.36478 * 127.12551 * 270.15754 * 4 3 2 6 6 C 1.50709 * 126.31190 * 359.97438 * 5 4 3 7 7 N 1.46905 * 109.46797 * 270.29987 * 6 5 4 8 8 N 1.30488 * 107.37287 * 180.26927 * 5 4 3 9 9 N 1.28537 * 110.05641 * 359.75879 * 8 5 4 10 10 C 1.31395 * 109.79796 * 0.02562 * 9 8 5 11 11 S 1.76198 * 126.49546 * 179.97438 * 10 9 8 12 12 C 1.76208 * 99.99674 * 0.02562 * 11 10 9 13 13 H 1.07997 * 119.99712 * 359.73070 * 12 11 10 14 14 C 1.38675 * 119.99936 * 179.97438 * 12 11 10 15 15 N 1.31642 * 119.99738 * 359.72614 * 14 12 11 16 16 Si 1.86798 * 119.99734 * 179.72803 * 14 12 11 17 17 H 1.48490 * 109.47339 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47239 * 120.00316 * 16 14 12 19 19 H 1.48504 * 109.46636 * 239.99875 * 16 14 12 20 20 H 1.08999 * 109.47374 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.47240 * 300.00075 * 1 2 3 22 22 H 1.09003 * 109.46853 * 59.99726 * 1 2 3 23 23 H 1.09003 * 109.47240 * 239.99925 * 2 1 3 24 24 H 1.08998 * 109.46941 * 119.99792 * 2 1 3 25 25 H 1.09003 * 109.47010 * 59.99784 * 3 2 1 26 26 H 1.09002 * 109.46674 * 300.00241 * 3 2 1 27 27 H 1.08993 * 109.47419 * 30.30320 * 6 5 4 28 28 H 1.09003 * 109.46635 * 150.30462 * 6 5 4 29 29 H 1.00899 * 110.99842 * 56.04728 * 7 6 5 30 30 H 1.00896 * 110.99702 * 180.02562 * 7 6 5 31 31 H 0.97000 * 119.99445 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.3283 1.4395 1.0891 6 6 3.8981 1.4364 2.5335 7 7 3.7519 2.8204 3.0039 8 7 5.5566 1.4465 0.6487 9 7 5.5640 1.4484 -0.6367 10 6 4.3303 1.4433 -1.0888 11 16 3.8337 1.4441 -2.7794 12 6 5.4125 1.4524 -3.5619 13 1 6.3116 1.4597 -2.9637 14 6 5.5004 1.4547 -4.9459 15 7 4.4043 1.4453 -5.6750 16 14 7.1740 1.4712 -5.7753 17 1 8.2391 1.4807 -4.7408 18 1 7.3179 0.2610 -6.6237 19 1 7.2952 2.6859 -6.6211 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.6767 1.9564 0.8900 26 1 1.6766 1.9563 -0.8900 27 1 2.9439 0.9180 2.6273 28 1 4.6498 0.9255 3.1353 29 1 3.1079 3.3341 2.4214 30 1 3.4643 2.8452 3.9707 31 1 4.4659 1.4465 -6.6430 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070945070.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:28 Heat of formation + Delta-G solvation = 58.443218 kcal Electronic energy + Delta-G solvation = -15195.412381 eV Core-core repulsion = 12638.793365 eV Total energy + Delta-G solvation = -2556.619015 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 242.090 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.02364 -35.98390 -34.75320 -32.64804 -32.16461 -29.73489 -26.64745 -25.79651 -24.92233 -22.23831 -21.56725 -20.20437 -18.00248 -16.68403 -16.08063 -15.55850 -15.33485 -14.90472 -14.86539 -14.35742 -13.68160 -13.32988 -13.08303 -12.50254 -12.28929 -12.18713 -11.55315 -11.33066 -11.13907 -11.02510 -10.89124 -10.51936 -10.14480 -9.76628 -9.67060 -9.45327 -8.91788 -8.80887 -8.73746 -6.74447 -6.44573 -4.18039 2.36043 2.51065 3.20165 3.25631 3.31909 3.39860 3.63340 4.04173 4.56548 4.64767 4.67881 4.82629 4.98627 4.99512 5.06407 5.12580 5.25073 5.44093 5.56619 5.60563 5.85845 5.96726 6.15963 6.22776 6.46253 6.80265 6.90396 7.24862 7.45427 7.60460 8.41636 9.08225 9.55731 10.63959 Molecular weight = 242.09amu Principal moments of inertia in cm(-1) A = 0.027841 B = 0.007213 C = 0.005964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.480050 B = 3881.132230 C = 4693.383059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.142 4.142 3 C 0.113 3.887 4 N -0.477 5.477 5 C 0.136 3.864 6 C 0.163 3.837 7 N -0.841 5.841 8 N -0.275 5.275 9 N -0.309 5.309 10 C 0.172 3.828 11 S 0.128 5.872 12 C -0.529 4.529 13 H 0.105 0.895 14 C 0.074 3.926 15 N -0.880 5.880 16 Si 0.931 3.069 17 H -0.264 1.264 18 H -0.278 1.278 19 H -0.278 1.278 20 H 0.060 0.940 21 H 0.053 0.947 22 H 0.062 0.938 23 H 0.080 0.920 24 H 0.064 0.936 25 H 0.082 0.918 26 H 0.098 0.902 27 H 0.039 0.961 28 H 0.100 0.900 29 H 0.340 0.660 30 H 0.345 0.655 31 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.826 -1.046 11.950 15.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.180 4.180 3 C -0.011 4.011 4 N -0.174 5.174 5 C -0.134 4.134 6 C 0.031 3.969 7 N -0.372 5.372 8 N -0.115 5.115 9 N -0.154 5.154 10 C -0.199 4.199 11 S 0.359 5.641 12 C -0.678 4.678 13 H 0.123 0.877 14 C -0.134 4.134 15 N -0.515 5.515 16 Si 0.756 3.244 17 H -0.188 1.188 18 H -0.204 1.204 19 H -0.204 1.204 20 H 0.079 0.921 21 H 0.072 0.928 22 H 0.081 0.919 23 H 0.098 0.902 24 H 0.083 0.917 25 H 0.100 0.900 26 H 0.116 0.884 27 H 0.057 0.943 28 H 0.118 0.882 29 H 0.153 0.847 30 H 0.159 0.841 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.670 -0.976 11.092 14.112 hybrid contribution -0.329 -0.213 0.121 0.410 sum -9.000 -1.188 11.213 14.427 Atomic orbital electron populations 1.21679 0.94403 1.02320 1.02062 1.21908 0.96588 0.95835 1.03701 1.21804 0.76465 0.98644 1.04162 1.46322 1.07383 1.58334 1.05380 1.24364 0.87775 1.10374 0.90923 1.19808 0.99741 0.90281 0.87101 1.58544 1.58195 1.13362 1.07130 1.73890 1.17290 1.15825 1.04543 1.74779 1.16444 1.22884 1.01309 1.28350 0.89335 1.03667 0.98556 1.83344 1.13219 1.87118 0.80386 1.23246 0.92601 1.58264 0.93649 0.87689 1.25067 0.98834 0.93584 0.95958 1.69960 1.27669 1.47285 1.06620 0.85888 0.81663 0.77869 0.78955 1.18821 1.20396 1.20391 0.92061 0.92803 0.91927 0.90166 0.91701 0.90001 0.88362 0.94275 0.88166 0.84737 0.84092 0.91770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.91 37.16 0.37 -0.95 16 2 C -0.14 -1.70 6.26 -26.73 -0.17 -1.86 16 3 C 0.11 1.51 5.75 -4.04 -0.02 1.49 16 4 N -0.48 -8.84 2.81 -113.49 -0.32 -9.16 16 5 C 0.14 2.53 7.58 -154.10 -1.17 1.37 16 6 C 0.16 2.10 6.98 -4.97 -0.03 2.07 16 7 N -0.84 -9.59 9.61 -11.40 -0.11 -9.70 16 8 N -0.27 -6.42 12.19 32.97 0.40 -6.02 16 9 N -0.31 -8.05 11.04 30.72 0.34 -7.71 16 10 C 0.17 4.06 8.06 -88.12 -0.71 3.35 16 11 S 0.13 3.20 21.39 -107.50 -2.30 0.90 16 12 C -0.53 -15.07 9.37 30.89 0.29 -14.78 16 13 H 0.11 3.12 6.93 -52.49 -0.36 2.76 16 14 C 0.07 2.05 5.49 -17.47 -0.10 1.96 16 15 N -0.88 -24.72 13.22 55.48 0.73 -23.99 16 16 Si 0.93 21.62 29.55 -169.99 -5.02 16.60 16 17 H -0.26 -6.21 7.11 56.52 0.40 -5.81 16 18 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 21 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 22 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 23 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.08 0.84 7.88 -51.93 -0.41 0.43 16 26 H 0.10 1.35 7.86 -51.93 -0.41 0.95 16 27 H 0.04 0.40 7.93 -51.93 -0.41 -0.01 16 28 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.34 3.72 8.98 -39.29 -0.35 3.36 16 30 H 0.35 2.75 9.08 -39.29 -0.36 2.40 16 31 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 286.35 15.07 4.32 4.32 Total: -1.00 -33.46 286.35 -7.48 -40.94 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -3.97 Total: 1.18 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: -1.54 Total: -7.36 kcal Atomic # 7 Polarization: -57.62 SS G_CDS: 1.05 Total: -56.58 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: 3.20 SS G_CDS: -2.30 Total: 0.90 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -33.46 -7.48 -40.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070945070.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.380 kcal (2) G-P(sol) polarization free energy of solvation -33.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds