Wall clock time and date at job start Mon Mar 30 2020 03:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47350 * 2 1 4 4 N 1.46499 * 109.47010 * 179.97438 * 3 2 1 5 5 C 1.36478 * 127.12551 * 270.15754 * 4 3 2 6 6 C 1.50709 * 126.31190 * 359.97438 * 5 4 3 7 7 N 1.46905 * 109.46797 * 270.29987 * 6 5 4 8 8 N 1.30488 * 107.37287 * 180.26927 * 5 4 3 9 9 N 1.28537 * 110.05641 * 359.75879 * 8 5 4 10 10 C 1.31395 * 109.79796 * 0.02562 * 9 8 5 11 11 S 1.76198 * 126.49546 * 179.97438 * 10 9 8 12 12 C 1.76208 * 99.99674 * 0.02562 * 11 10 9 13 13 H 1.07997 * 119.99712 * 359.73070 * 12 11 10 14 14 C 1.38675 * 119.99936 * 179.97438 * 12 11 10 15 15 N 1.31642 * 119.99738 * 359.72614 * 14 12 11 16 16 Si 1.86798 * 119.99734 * 179.72803 * 14 12 11 17 17 H 1.48490 * 109.47339 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47239 * 120.00316 * 16 14 12 19 19 H 1.48504 * 109.46636 * 239.99875 * 16 14 12 20 20 H 1.08999 * 109.47374 * 179.97438 * 1 2 3 21 21 H 1.09003 * 109.47240 * 300.00075 * 1 2 3 22 22 H 1.09003 * 109.46853 * 59.99726 * 1 2 3 23 23 H 1.09003 * 109.47240 * 239.99925 * 2 1 3 24 24 H 1.08998 * 109.46941 * 119.99792 * 2 1 3 25 25 H 1.09003 * 109.47010 * 59.99784 * 3 2 1 26 26 H 1.09002 * 109.46674 * 300.00241 * 3 2 1 27 27 H 1.08993 * 109.47419 * 30.30320 * 6 5 4 28 28 H 1.09003 * 109.46635 * 150.30462 * 6 5 4 29 29 H 1.00899 * 110.99842 * 56.04728 * 7 6 5 30 30 H 1.00896 * 110.99702 * 180.02562 * 7 6 5 31 31 H 0.97000 * 119.99445 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.3283 1.4395 1.0891 6 6 3.8981 1.4364 2.5335 7 7 3.7519 2.8204 3.0039 8 7 5.5566 1.4465 0.6487 9 7 5.5640 1.4484 -0.6367 10 6 4.3303 1.4433 -1.0888 11 16 3.8337 1.4441 -2.7794 12 6 5.4125 1.4524 -3.5619 13 1 6.3116 1.4597 -2.9637 14 6 5.5004 1.4547 -4.9459 15 7 4.4043 1.4453 -5.6750 16 14 7.1740 1.4712 -5.7753 17 1 8.2391 1.4807 -4.7408 18 1 7.3179 0.2610 -6.6237 19 1 7.2952 2.6859 -6.6211 20 1 -0.3634 -1.0276 -0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 1.6767 1.9564 0.8900 26 1 1.6766 1.9563 -0.8900 27 1 2.9439 0.9180 2.6273 28 1 4.6498 0.9255 3.1353 29 1 3.1079 3.3341 2.4214 30 1 3.4643 2.8452 3.9707 31 1 4.4659 1.4465 -6.6430 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070945070.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:27 Heat of formation + Delta-G solvation = 34.365505 kcal Electronic energy + Delta-G solvation = -15196.456469 eV Core-core repulsion = 12638.793365 eV Total energy + Delta-G solvation = -2557.663103 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 242.090 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.67217 -37.23973 -35.79730 -34.74736 -33.40804 -31.29012 -27.95432 -27.65665 -26.21898 -23.70027 -22.80498 -21.62215 -19.90787 -18.17100 -17.39162 -17.04496 -16.92058 -16.68233 -16.03494 -15.40097 -14.98895 -14.75705 -14.40523 -13.56714 -13.50643 -13.25186 -13.17409 -13.00128 -12.89619 -12.45620 -12.24456 -12.00676 -11.83695 -11.54354 -11.45630 -10.98842 -10.80088 -10.67203 -9.71254 -8.70405 -8.53085 -6.30380 0.75717 0.78801 1.36028 1.36980 1.53363 1.84244 1.91857 2.13150 2.87381 3.02138 3.38398 3.59397 3.72536 3.83577 3.96719 4.18091 4.32895 4.42023 4.53007 4.72787 4.80065 4.92571 5.05602 5.12018 5.23450 5.36698 5.46694 5.96364 6.07696 6.21755 6.56558 6.95361 7.85091 8.56638 Molecular weight = 242.09amu Principal moments of inertia in cm(-1) A = 0.027841 B = 0.007213 C = 0.005964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.480050 B = 3881.132230 C = 4693.383059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.136 4.136 3 C 0.101 3.899 4 N -0.464 5.464 5 C 0.167 3.833 6 C 0.166 3.834 7 N -0.850 5.850 8 N -0.327 5.327 9 N -0.355 5.355 10 C 0.154 3.846 11 S 0.118 5.882 12 C -0.560 4.560 13 H 0.081 0.919 14 C 0.033 3.967 15 N -0.903 5.903 16 Si 0.993 3.007 17 H -0.275 1.275 18 H -0.263 1.263 19 H -0.264 1.264 20 H 0.068 0.932 21 H 0.079 0.921 22 H 0.058 0.942 23 H 0.046 0.954 24 H 0.074 0.926 25 H 0.127 0.873 26 H 0.092 0.908 27 H 0.080 0.920 28 H 0.107 0.893 29 H 0.345 0.655 30 H 0.369 0.631 31 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.342 -0.987 13.668 17.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.175 4.175 3 C -0.020 4.020 4 N -0.160 5.160 5 C -0.105 4.105 6 C 0.033 3.967 7 N -0.386 5.386 8 N -0.167 5.167 9 N -0.199 5.199 10 C -0.220 4.220 11 S 0.348 5.652 12 C -0.708 4.708 13 H 0.099 0.901 14 C -0.173 4.173 15 N -0.539 5.539 16 Si 0.815 3.185 17 H -0.200 1.200 18 H -0.188 1.188 19 H -0.188 1.188 20 H 0.087 0.913 21 H 0.098 0.902 22 H 0.077 0.923 23 H 0.065 0.935 24 H 0.093 0.907 25 H 0.145 0.855 26 H 0.111 0.889 27 H 0.098 0.902 28 H 0.125 0.875 29 H 0.158 0.842 30 H 0.186 0.814 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.230 -0.914 12.851 16.451 hybrid contribution 0.053 -0.227 -0.203 0.309 sum -10.177 -1.141 12.647 16.273 Atomic orbital electron populations 1.21653 0.91684 1.03255 1.03196 1.21874 0.98788 0.94273 1.02544 1.22320 0.73286 1.00295 1.06114 1.46621 1.09187 1.56378 1.03832 1.25512 0.86596 1.05300 0.93112 1.20057 1.01802 0.91829 0.83014 1.58407 1.59054 1.12334 1.08782 1.73802 1.20131 1.19158 1.03584 1.74652 1.18349 1.23898 1.03025 1.28003 0.89924 1.05216 0.98876 1.82926 1.11793 1.88743 0.81700 1.23338 0.93389 1.59565 0.94520 0.90073 1.25891 1.02470 0.92810 0.96160 1.70004 1.29316 1.47364 1.07235 0.84984 0.76880 0.78897 0.77761 1.19981 1.18804 1.18837 0.91285 0.90175 0.92291 0.93528 0.90724 0.85525 0.88939 0.90209 0.87526 0.84211 0.81428 0.91004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.91 71.98 0.71 -1.36 16 2 C -0.14 -2.97 6.26 30.59 0.19 -2.77 16 3 C 0.10 2.47 5.75 86.38 0.50 2.97 16 4 N -0.46 -16.79 2.81 -512.98 -1.44 -18.23 16 5 C 0.17 5.96 7.58 137.67 1.04 7.00 16 6 C 0.17 3.64 6.98 85.56 0.60 4.24 16 7 N -0.85 -16.23 9.61 -189.99 -1.83 -18.06 16 8 N -0.33 -15.43 12.19 -49.59 -0.60 -16.04 16 9 N -0.36 -19.13 11.04 -56.71 -0.63 -19.76 16 10 C 0.15 7.46 8.06 179.48 1.45 8.90 16 11 S 0.12 6.12 21.39 -56.49 -1.21 4.91 16 12 C -0.56 -33.15 9.37 67.92 0.64 -32.51 16 13 H 0.08 5.09 6.93 -2.91 -0.02 5.07 16 14 C 0.03 1.86 5.49 84.83 0.47 2.32 16 15 N -0.90 -51.34 13.22 21.63 0.29 -51.05 16 16 Si 0.99 44.96 29.55 68.60 2.03 46.98 16 17 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 18 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 19 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 20 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 21 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 22 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 23 H 0.05 1.33 8.14 -2.39 -0.02 1.32 16 24 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.13 2.00 7.88 -2.39 -0.02 1.98 16 26 H 0.09 2.43 7.86 -2.39 -0.02 2.41 16 27 H 0.08 1.17 7.93 -2.39 -0.02 1.16 16 28 H 0.11 2.29 8.14 -2.39 -0.02 2.28 16 29 H 0.34 6.19 8.98 -89.70 -0.81 5.38 16 30 H 0.37 4.29 9.08 -89.70 -0.81 3.47 16 31 H 0.28 14.65 8.31 -92.71 -0.77 13.88 16 Total: -1.00 -76.31 286.35 1.73 -74.57 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -0.46 Total: 7.88 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: 5.59 Total: -11.21 kcal Atomic # 7 Polarization: -118.93 SS G_CDS: -4.21 Total: -123.14 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.98 kcal Atomic # 16 Polarization: 6.12 SS G_CDS: -1.21 Total: 4.91 kcal Total: -76.31 1.73 -74.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070945070.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.940 kcal (2) G-P(sol) polarization free energy of solvation -76.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds