Wall clock time and date at job start Mon Mar 30 2020 03:28:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31013 * 1 3 3 Si 1.86798 * 119.99865 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99916 * 3 2 1 5 5 H 1.48503 * 109.47261 * 150.00097 * 3 2 1 6 6 H 1.48500 * 109.47454 * 30.00090 * 3 2 1 7 7 C 1.39585 * 119.99810 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00064 * 359.97438 * 7 2 1 9 9 N 1.36125 * 119.99569 * 179.97438 * 7 2 1 10 10 C 1.34774 * 119.99619 * 179.97438 * 9 7 2 11 11 O 1.21504 * 120.00280 * 0.02562 * 10 9 7 12 12 C 1.48837 * 119.99840 * 179.97438 * 10 9 7 13 13 O 1.21434 * 120.00049 * 0.02562 * 12 10 9 14 14 N 1.34774 * 119.99840 * 179.97438 * 12 10 9 15 15 C 1.46499 * 120.00002 * 180.02562 * 14 12 10 16 16 H 1.08997 * 109.51974 * 35.12722 * 15 14 12 17 17 C 1.53177 * 109.52302 * 155.31912 * 15 14 12 18 18 C 1.53174 * 109.03691 * 176.88970 * 17 15 14 19 19 C 1.53094 * 109.16190 * 303.01786 * 18 17 15 20 20 O 1.42898 * 109.41597 * 57.60708 * 19 18 17 21 21 C 1.42903 * 114.10079 * 298.84610 * 20 19 18 22 22 H 0.97004 * 119.99929 * 359.97438 * 1 2 3 23 23 H 0.97001 * 120.00020 * 0.02562 * 9 7 2 24 24 H 0.97001 * 120.00361 * 0.02562 * 14 12 10 25 25 H 1.09001 * 109.54074 * 296.74975 * 17 15 14 26 26 H 1.08996 * 109.54620 * 57.01899 * 17 15 14 27 27 H 1.08998 * 109.52755 * 183.11059 * 18 17 15 28 28 H 1.09005 * 109.57862 * 62.95235 * 18 17 15 29 29 H 1.08999 * 109.48086 * 297.62302 * 19 18 17 30 30 H 1.09005 * 109.47939 * 177.59184 * 19 18 17 31 31 H 1.09006 * 109.47449 * 301.17384 * 21 20 19 32 32 H 1.09000 * 109.48832 * 181.14661 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2441 1.6177 0.0000 4 1 2.4916 2.0465 -1.4001 5 1 3.5417 1.4402 0.7000 6 1 1.4416 2.6527 0.7000 7 6 2.0080 -1.2089 -0.0005 8 1 1.4680 -2.1441 -0.0005 9 7 3.3693 -1.2088 -0.0011 10 6 4.0431 -2.3760 -0.0011 11 8 3.4356 -3.4283 -0.0011 12 6 5.5315 -2.3760 -0.0022 13 8 6.1387 -1.3243 -0.0027 14 7 6.2053 -3.5432 -0.0017 15 6 7.6703 -3.5432 -0.0023 16 1 8.0348 -2.7026 0.5881 17 6 8.1824 -4.8546 0.6013 18 6 9.7121 -4.8764 0.5242 19 6 10.1443 -4.7000 -0.9339 20 8 9.6092 -3.4768 -1.4433 21 6 8.1814 -3.4183 -1.4399 22 1 -0.4850 0.8401 0.0004 23 1 3.8542 -0.3687 -0.0007 24 1 5.7203 -4.3833 -0.0009 25 1 7.8689 -4.9235 1.6429 26 1 7.7770 -5.6969 0.0406 27 1 10.0823 -5.8297 0.9010 28 1 10.1197 -4.0639 1.1257 29 1 9.7713 -5.5349 -1.5271 30 1 11.2325 -4.6718 -0.9895 31 1 7.7827 -4.2365 -2.0398 32 1 7.8554 -2.4669 -1.8603 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071023853.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:40 Heat of formation + Delta-G solvation = -146.428496 kcal Electronic energy + Delta-G solvation = -17390.022638 eV Core-core repulsion = 14349.474096 eV Total energy + Delta-G solvation = -3040.548542 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.63774 -40.30309 -39.08542 -36.69276 -35.93274 -34.03454 -33.66695 -31.01076 -28.00525 -26.08833 -25.35640 -23.41173 -21.67841 -21.31857 -20.68143 -18.80771 -17.88872 -17.35963 -17.29323 -16.84047 -16.49965 -16.25555 -15.74197 -15.42363 -14.86917 -14.63087 -14.47861 -14.38913 -14.09066 -13.62249 -13.10894 -12.93119 -12.57256 -12.51823 -12.15413 -12.02250 -11.89468 -11.72598 -11.45296 -10.94521 -10.49151 -10.36542 -10.07554 -8.63987 -6.17997 0.47484 1.28458 1.32278 1.38054 1.62325 2.09069 2.25039 2.83865 3.04972 3.12090 3.58504 3.76168 3.79742 3.91290 4.04087 4.15593 4.45684 4.59277 4.69014 4.75565 4.87557 4.99361 5.08895 5.17116 5.24767 5.31987 5.72119 6.02398 6.19595 6.35017 6.56865 6.87958 7.12411 7.59752 8.50412 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.049087 B = 0.005115 C = 0.004818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.274814 B = 5472.604937 C = 5810.205532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.013 3.987 3 Si 0.947 3.053 4 H -0.252 1.252 5 H -0.249 1.249 6 H -0.256 1.256 7 C -0.340 4.340 8 H 0.079 0.921 9 N -0.531 5.531 10 C 0.406 3.594 11 O -0.602 6.602 12 C 0.524 3.476 13 O -0.558 6.558 14 N -0.685 5.685 15 C 0.109 3.891 16 H 0.080 0.920 17 C -0.126 4.126 18 C -0.145 4.145 19 C 0.046 3.954 20 O -0.396 6.396 21 C 0.056 3.944 22 H 0.291 0.709 23 H 0.393 0.607 24 H 0.419 0.581 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.107 0.893 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.113 0.887 31 H 0.068 0.932 32 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.555 -7.169 -0.018 20.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.192 4.192 3 Si 0.766 3.234 4 H -0.176 1.176 5 H -0.173 1.173 6 H -0.180 1.180 7 C -0.469 4.469 8 H 0.097 0.903 9 N -0.169 5.169 10 C 0.191 3.809 11 O -0.490 6.490 12 C 0.307 3.693 13 O -0.437 6.437 14 N -0.338 5.338 15 C 0.005 3.995 16 H 0.098 0.902 17 C -0.164 4.164 18 C -0.183 4.183 19 C -0.030 4.030 20 O -0.314 6.314 21 C -0.022 4.022 22 H 0.101 0.899 23 H 0.229 0.771 24 H 0.257 0.743 25 H 0.100 0.900 26 H 0.106 0.894 27 H 0.125 0.875 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.131 0.869 31 H 0.086 0.914 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 19.524 -6.862 -0.089 20.695 hybrid contribution -0.618 0.514 0.111 0.812 sum 18.906 -6.348 0.023 19.943 Atomic orbital electron populations 1.69543 1.07868 1.30407 1.44944 1.26062 0.96348 1.02148 0.94681 0.85610 0.79366 0.77742 0.80640 1.17576 1.17310 1.17998 1.19185 0.80361 0.96105 1.51259 0.90282 1.41713 1.06675 1.07722 1.60813 1.19599 0.88235 0.84619 0.88471 1.90603 1.70059 1.31231 1.57079 1.19941 0.87976 0.84761 0.76667 1.90692 1.70396 1.31993 1.50626 1.45599 1.07132 1.08373 1.72745 1.21808 0.78113 1.01291 0.98285 0.90187 1.21920 0.97097 0.94935 1.02483 1.22167 0.93900 1.04552 0.97714 1.22945 1.00238 0.86210 0.93637 1.87965 1.19340 1.39717 1.84409 1.22852 0.81426 1.02634 0.95325 0.89868 0.77105 0.74307 0.89959 0.89367 0.87479 0.91211 0.91671 0.86867 0.91380 0.90485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.48 13.94 21.76 0.30 -50.18 16 2 C 0.01 0.70 5.51 85.14 0.47 1.17 16 3 Si 0.95 39.34 27.74 68.60 1.90 41.25 16 4 H -0.25 -9.98 7.11 99.48 0.71 -9.27 16 5 H -0.25 -9.85 6.53 99.48 0.65 -9.20 16 6 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 7 C -0.34 -19.60 10.16 84.35 0.86 -18.74 16 8 H 0.08 5.22 7.36 -2.91 -0.02 5.20 16 9 N -0.53 -27.05 5.06 -308.87 -1.56 -28.61 16 10 C 0.41 19.67 7.82 87.08 0.68 20.35 16 11 O -0.60 -32.08 16.03 -3.73 -0.06 -32.14 16 12 C 0.52 20.89 7.83 87.08 0.68 21.57 16 13 O -0.56 -23.72 16.13 -3.51 -0.06 -23.77 16 14 N -0.68 -20.77 5.08 -444.04 -2.25 -23.02 16 15 C 0.11 2.70 2.65 45.08 0.12 2.82 16 16 H 0.08 2.29 7.58 -2.39 -0.02 2.27 16 17 C -0.13 -2.08 5.50 30.71 0.17 -1.91 16 18 C -0.15 -1.86 6.14 30.68 0.19 -1.68 16 19 C 0.05 0.66 6.84 72.01 0.49 1.15 16 20 O -0.40 -9.20 10.77 -148.98 -1.60 -10.80 16 21 C 0.06 1.37 6.42 72.01 0.46 1.83 16 22 H 0.29 14.85 8.30 -92.71 -0.77 14.08 16 23 H 0.39 18.38 5.22 -92.71 -0.48 17.90 16 24 H 0.42 11.73 8.06 -92.71 -0.75 10.98 16 25 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 29 H 0.07 0.78 8.14 -2.39 -0.02 0.77 16 30 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16 31 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 32 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 Total: -1.00 -68.84 276.02 0.66 -68.18 By element: Atomic # 1 Polarization: 32.68 SS G_CDS: -0.13 Total: 32.55 kcal Atomic # 6 Polarization: 22.44 SS G_CDS: 4.12 Total: 26.56 kcal Atomic # 7 Polarization: -98.30 SS G_CDS: -3.51 Total: -101.82 kcal Atomic # 8 Polarization: -65.00 SS G_CDS: -1.72 Total: -66.72 kcal Atomic # 14 Polarization: 39.34 SS G_CDS: 1.90 Total: 41.25 kcal Total: -68.84 0.66 -68.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071023853.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.248 kcal (2) G-P(sol) polarization free energy of solvation -68.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds