Wall clock time and date at job start Mon Mar 30 2020 03:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86804 * 119.99879 * 2 1 4 4 H 1.48504 * 109.46874 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46939 * 300.00124 * 3 2 1 6 6 H 1.48502 * 109.47196 * 60.00008 * 3 2 1 7 7 C 1.37876 * 120.00258 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00423 * 185.00409 * 7 2 1 9 9 C 1.50700 * 119.99617 * 5.00985 * 7 2 1 10 10 H 1.09003 * 110.69845 * 338.02891 * 9 7 2 11 11 C 1.55452 * 110.61325 * 101.19554 * 9 7 2 12 12 C 1.55262 * 99.93434 * 152.54947 * 11 9 7 13 13 N 1.47901 * 103.26590 * 326.04685 * 12 11 9 14 14 N 1.36605 * 110.00239 * 22.32490 * 13 12 11 15 15 C 1.34770 * 124.94229 * 180.02562 * 14 13 12 16 16 O 1.21281 * 119.99779 * 175.14046 * 15 14 13 17 17 C 1.50701 * 119.99887 * 355.15055 * 15 14 13 18 18 C 1.53003 * 109.46930 * 179.97438 * 17 15 14 19 19 C 1.50697 * 109.47107 * 179.97438 * 18 17 15 20 20 O 1.20824 * 120.00306 * 359.97438 * 19 18 17 21 21 O 1.34232 * 119.99667 * 179.97438 * 19 18 17 22 22 H 0.96995 * 119.99969 * 355.00101 * 1 2 3 23 23 H 1.08999 * 111.48492 * 34.82274 * 11 9 7 24 24 H 1.09005 * 111.19226 * 270.15413 * 11 9 7 25 25 H 1.09006 * 110.66303 * 207.60459 * 12 11 9 26 26 H 1.08998 * 110.66148 * 84.49366 * 12 11 9 27 27 H 1.00897 * 110.99908 * 145.57043 * 13 12 11 28 28 H 1.08999 * 109.47602 * 59.99939 * 17 15 14 29 29 H 1.08998 * 109.47103 * 299.99172 * 17 15 14 30 30 H 1.09004 * 109.47474 * 299.99919 * 18 17 15 31 31 H 1.08999 * 109.47623 * 59.99467 * 18 17 15 32 32 H 0.96704 * 116.99691 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0815 -1.1958 0.0821 9 6 1.2554 -2.4967 -0.1129 10 1 0.2177 -2.3725 0.1967 11 6 1.3355 -3.0495 -1.5635 12 6 1.1895 -4.5690 -1.2795 13 7 1.8741 -4.7385 0.0205 14 7 1.9142 -3.5465 0.6865 15 6 2.4696 -3.3585 1.8999 16 8 2.5335 -2.2428 2.3713 17 6 3.0115 -4.5345 2.6709 18 6 3.5825 -4.0501 4.0052 19 6 4.1238 -5.2261 4.7765 20 8 4.0591 -6.3377 4.3074 21 8 4.6778 -5.0387 5.9847 22 1 -0.4850 0.8368 0.0732 23 1 2.2970 -2.8235 -2.0244 24 1 0.5104 -2.6796 -2.1723 25 1 1.6849 -5.1544 -2.0542 26 1 0.1384 -4.8461 -1.1997 27 1 1.4224 -5.4486 0.5771 28 1 3.7997 -5.0163 2.0924 29 1 2.2089 -5.2482 2.8566 30 1 4.3852 -3.3365 3.8194 31 1 2.7947 -3.5680 4.5840 32 1 5.0107 -5.8233 6.4415 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075620337.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:55 Heat of formation + Delta-G solvation = -95.426284 kcal Electronic energy + Delta-G solvation = -17657.893164 eV Core-core repulsion = 14619.556244 eV Total energy + Delta-G solvation = -3038.336920 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.27803 -39.32723 -37.01248 -36.14969 -33.12029 -32.45740 -30.93430 -29.53082 -26.27382 -24.98134 -22.69024 -21.21217 -20.42914 -18.87691 -18.16493 -17.14634 -16.75061 -16.16055 -15.90316 -15.16406 -14.70415 -14.39073 -13.79905 -13.36746 -13.03132 -12.84637 -12.67806 -12.12113 -11.80398 -11.58727 -11.49484 -11.26699 -11.02032 -10.89197 -10.71486 -10.54922 -10.48870 -10.01214 -9.72358 -9.01687 -8.80938 -8.43035 -6.94271 -6.04807 -4.04403 2.22082 2.99470 3.32800 3.40782 3.46899 3.57112 3.72895 4.47149 4.78808 4.87832 5.22433 5.24592 5.46856 5.49999 5.67124 5.70140 5.91059 6.02032 6.03252 6.14514 6.46650 6.48557 6.68895 6.93849 7.14290 7.47590 7.77168 7.87960 7.94889 8.14146 8.80412 9.03807 9.34140 9.57207 11.02544 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.023458 B = 0.007163 C = 0.005731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.349329 B = 3908.233244 C = 4884.371027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.068 3.932 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.283 1.283 7 C -0.481 4.481 8 H 0.061 0.939 9 C 0.241 3.759 10 H 0.067 0.933 11 C -0.129 4.129 12 C 0.033 3.967 13 N -0.464 5.464 14 N -0.464 5.464 15 C 0.526 3.474 16 O -0.516 6.516 17 C -0.124 4.124 18 C -0.098 4.098 19 C 0.481 3.519 20 O -0.520 6.520 21 O -0.518 6.518 22 H 0.263 0.737 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.086 0.914 26 H 0.044 0.956 27 H 0.316 0.684 28 H 0.099 0.901 29 H 0.088 0.912 30 H 0.115 0.885 31 H 0.113 0.887 32 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.196 -10.258 4.691 12.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.134 4.134 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.209 1.209 7 C -0.520 4.520 8 H 0.080 0.920 9 C 0.141 3.859 10 H 0.084 0.916 11 C -0.169 4.169 12 C -0.096 4.096 13 N -0.188 5.188 14 N -0.288 5.288 15 C 0.311 3.689 16 O -0.389 6.389 17 C -0.164 4.164 18 C -0.136 4.136 19 C 0.324 3.676 20 O -0.409 6.409 21 O -0.330 6.330 22 H 0.072 0.928 23 H 0.091 0.909 24 H 0.092 0.908 25 H 0.104 0.896 26 H 0.063 0.937 27 H 0.133 0.867 28 H 0.117 0.883 29 H 0.106 0.894 30 H 0.133 0.867 31 H 0.131 0.869 32 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 4.584 -9.369 4.381 11.313 hybrid contribution -0.417 0.111 0.549 0.698 sum 4.167 -9.258 4.929 11.286 Atomic orbital electron populations 1.69878 1.06077 1.27189 1.50665 1.24908 0.94849 0.99508 0.94183 0.86361 0.80226 0.83036 0.77314 1.19637 1.21151 1.20949 1.20877 0.93557 0.88871 1.48715 0.92036 1.20333 0.94938 0.85750 0.84863 0.91566 1.23235 1.02115 0.91205 1.00329 1.23294 0.96242 0.99698 0.90328 1.62621 1.54406 0.98966 1.02782 1.48784 1.57191 1.04994 1.17855 1.19556 0.79444 0.89855 0.80006 1.90765 1.56262 1.24903 1.66926 1.21416 1.02581 0.97916 0.94518 1.21087 1.03488 0.94050 0.94987 1.23741 0.73773 0.90989 0.79083 1.90709 1.54324 1.26952 1.68917 1.84580 1.71876 1.43978 1.32526 0.92771 0.90935 0.90791 0.89621 0.93718 0.86654 0.88282 0.89359 0.86714 0.86890 0.73577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.16 12.77 55.43 0.71 -25.45 16 2 C 0.07 1.92 5.45 -17.82 -0.10 1.82 16 3 Si 0.90 22.26 29.54 -169.99 -5.02 17.24 16 4 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 6 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 7 C -0.48 -13.47 6.55 -34.44 -0.23 -13.70 16 8 H 0.06 1.81 7.76 -52.49 -0.41 1.40 16 9 C 0.24 5.98 3.41 -67.24 -0.23 5.75 16 10 H 0.07 1.84 7.25 -51.93 -0.38 1.47 16 11 C -0.13 -2.66 6.76 -24.23 -0.16 -2.83 16 12 C 0.03 0.55 7.74 -2.07 -0.02 0.53 16 13 N -0.46 -8.19 7.19 -8.69 -0.06 -8.25 16 14 N -0.46 -10.07 3.66 -53.03 -0.19 -10.26 16 15 C 0.53 11.19 7.70 -10.99 -0.08 11.10 16 16 O -0.52 -13.03 14.55 5.56 0.08 -12.95 16 17 C -0.12 -1.96 4.35 -27.88 -0.12 -2.08 16 18 C -0.10 -1.37 5.10 -27.88 -0.14 -1.51 16 19 C 0.48 6.19 8.33 36.00 0.30 6.49 16 20 O -0.52 -7.94 16.74 -18.75 -0.31 -8.26 16 21 O -0.52 -5.27 13.42 -39.26 -0.53 -5.80 16 22 H 0.26 7.26 8.32 -40.82 -0.34 6.92 16 23 H 0.07 1.52 8.05 -51.93 -0.42 1.10 16 24 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 25 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.32 4.77 8.82 -181.36 -1.60 3.17 16 28 H 0.10 1.54 8.10 -51.93 -0.42 1.12 16 29 H 0.09 1.28 8.10 -51.93 -0.42 0.86 16 30 H 0.11 1.61 8.10 -51.93 -0.42 1.19 16 31 H 0.11 1.56 8.10 -51.93 -0.42 1.13 16 32 H 0.41 2.25 9.10 45.56 0.41 2.67 16 LS Contribution 280.71 15.07 4.23 4.23 Total: -1.00 -33.78 280.71 -6.35 -40.13 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -4.47 Total: 3.79 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: -0.78 Total: 5.57 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: 0.45 Total: -43.96 kcal Atomic # 8 Polarization: -26.25 SS G_CDS: -0.76 Total: -27.01 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -33.78 -6.35 -40.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075620337.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.292 kcal (2) G-P(sol) polarization free energy of solvation -33.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds