Wall clock time and date at job start Mon Mar 30 2020 03:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86804 * 119.99879 * 2 1 4 4 H 1.48504 * 109.46874 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.46939 * 300.00124 * 3 2 1 6 6 H 1.48502 * 109.47196 * 60.00008 * 3 2 1 7 7 C 1.37876 * 120.00258 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00423 * 185.00409 * 7 2 1 9 9 C 1.50700 * 119.99617 * 5.00985 * 7 2 1 10 10 H 1.09003 * 110.69845 * 338.02891 * 9 7 2 11 11 C 1.55452 * 110.61325 * 101.19554 * 9 7 2 12 12 C 1.55262 * 99.93434 * 152.54947 * 11 9 7 13 13 N 1.47901 * 103.26590 * 326.04685 * 12 11 9 14 14 N 1.36605 * 110.00239 * 22.32490 * 13 12 11 15 15 C 1.34770 * 124.94229 * 180.02562 * 14 13 12 16 16 O 1.21281 * 119.99779 * 175.14046 * 15 14 13 17 17 C 1.50701 * 119.99887 * 355.15055 * 15 14 13 18 18 C 1.53003 * 109.46930 * 179.97438 * 17 15 14 19 19 C 1.50697 * 109.47107 * 179.97438 * 18 17 15 20 20 O 1.20824 * 120.00306 * 359.97438 * 19 18 17 21 21 O 1.34232 * 119.99667 * 179.97438 * 19 18 17 22 22 H 0.96995 * 119.99969 * 355.00101 * 1 2 3 23 23 H 1.08999 * 111.48492 * 34.82274 * 11 9 7 24 24 H 1.09005 * 111.19226 * 270.15413 * 11 9 7 25 25 H 1.09006 * 110.66303 * 207.60459 * 12 11 9 26 26 H 1.08998 * 110.66148 * 84.49366 * 12 11 9 27 27 H 1.00897 * 110.99908 * 145.57043 * 13 12 11 28 28 H 1.08999 * 109.47602 * 59.99939 * 17 15 14 29 29 H 1.08998 * 109.47103 * 299.99172 * 17 15 14 30 30 H 1.09004 * 109.47474 * 299.99919 * 18 17 15 31 31 H 1.08999 * 109.47623 * 59.99467 * 18 17 15 32 32 H 0.96704 * 116.99691 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0815 -1.1958 0.0821 9 6 1.2554 -2.4967 -0.1129 10 1 0.2177 -2.3725 0.1967 11 6 1.3355 -3.0495 -1.5635 12 6 1.1895 -4.5690 -1.2795 13 7 1.8741 -4.7385 0.0205 14 7 1.9142 -3.5465 0.6865 15 6 2.4696 -3.3585 1.8999 16 8 2.5335 -2.2428 2.3713 17 6 3.0115 -4.5345 2.6709 18 6 3.5825 -4.0501 4.0052 19 6 4.1238 -5.2261 4.7765 20 8 4.0591 -6.3377 4.3074 21 8 4.6778 -5.0387 5.9847 22 1 -0.4850 0.8368 0.0732 23 1 2.2970 -2.8235 -2.0244 24 1 0.5104 -2.6796 -2.1723 25 1 1.6849 -5.1544 -2.0542 26 1 0.1384 -4.8461 -1.1997 27 1 1.4224 -5.4486 0.5771 28 1 3.7997 -5.0163 2.0924 29 1 2.2089 -5.2482 2.8566 30 1 4.3852 -3.3365 3.8194 31 1 2.7947 -3.5680 4.5840 32 1 5.0107 -5.8233 6.4415 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075620337.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:55 Heat of formation + Delta-G solvation = -121.403753 kcal Electronic energy + Delta-G solvation = -17659.019632 eV Core-core repulsion = 14619.556244 eV Total energy + Delta-G solvation = -3039.463388 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.40308 -40.87001 -38.64352 -37.12129 -35.06790 -33.91777 -32.50278 -31.33396 -27.67833 -26.85650 -24.24123 -22.56747 -21.89217 -20.46099 -19.27854 -18.75838 -18.42387 -17.36359 -17.23507 -16.75093 -16.50025 -15.90297 -15.43366 -14.75710 -14.56931 -14.29547 -14.05166 -13.89243 -13.35332 -13.10700 -12.89725 -12.78687 -12.53853 -12.50668 -12.38308 -12.19031 -12.04086 -11.61496 -11.50722 -10.87828 -10.65799 -10.42146 -8.60763 -8.17200 -6.23127 1.21030 1.35142 1.38078 1.49972 1.87027 1.91719 2.29225 2.44242 3.10675 3.41252 3.68775 4.01108 4.08783 4.19372 4.29778 4.48756 4.58038 4.66953 4.80186 4.83237 4.95929 5.07534 5.28715 5.45981 5.62241 5.68806 5.77351 6.08499 6.22703 6.76123 7.02741 7.21212 7.41347 7.71696 8.88350 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.023458 B = 0.007163 C = 0.005731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.349329 B = 3908.233244 C = 4884.371027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.018 3.982 3 Si 0.957 3.043 4 H -0.274 1.274 5 H -0.270 1.270 6 H -0.284 1.284 7 C -0.488 4.488 8 H 0.039 0.961 9 C 0.232 3.768 10 H 0.030 0.970 11 C -0.125 4.125 12 C 0.044 3.956 13 N -0.459 5.459 14 N -0.471 5.471 15 C 0.514 3.486 16 O -0.566 6.566 17 C -0.105 4.105 18 C -0.098 4.098 19 C 0.497 3.503 20 O -0.544 6.544 21 O -0.511 6.511 22 H 0.264 0.736 23 H 0.066 0.934 24 H 0.073 0.927 25 H 0.122 0.878 26 H 0.064 0.936 27 H 0.337 0.663 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.915 -11.919 4.744 13.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.181 4.181 3 Si 0.783 3.217 4 H -0.199 1.199 5 H -0.195 1.195 6 H -0.211 1.211 7 C -0.528 4.528 8 H 0.058 0.942 9 C 0.130 3.870 10 H 0.048 0.952 11 C -0.164 4.164 12 C -0.085 4.085 13 N -0.185 5.185 14 N -0.293 5.293 15 C 0.302 3.698 16 O -0.442 6.442 17 C -0.145 4.145 18 C -0.136 4.136 19 C 0.341 3.659 20 O -0.435 6.435 21 O -0.325 6.325 22 H 0.073 0.927 23 H 0.084 0.916 24 H 0.091 0.909 25 H 0.140 0.860 26 H 0.082 0.918 27 H 0.156 0.844 28 H 0.126 0.874 29 H 0.125 0.875 30 H 0.130 0.870 31 H 0.131 0.869 32 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges 5.320 -11.072 4.446 13.063 hybrid contribution -0.621 0.554 0.581 1.014 sum 4.699 -10.518 5.026 12.569 Atomic orbital electron populations 1.69971 1.07068 1.27804 1.52129 1.25600 0.95672 1.02445 0.94375 0.85526 0.78822 0.79690 0.77681 1.19855 1.19529 1.21058 1.20987 0.92590 0.90847 1.48341 0.94230 1.20143 0.92769 0.86180 0.87861 0.95243 1.23040 1.01772 0.94378 0.97206 1.23402 0.97996 0.96716 0.90353 1.62635 1.55327 0.97345 1.03164 1.48693 1.56630 1.05954 1.18058 1.20532 0.78616 0.90788 0.79818 1.90727 1.58144 1.27353 1.68001 1.21263 1.03130 0.95462 0.94608 1.20987 1.03520 0.94654 0.94441 1.23233 0.73358 0.89810 0.79512 1.90710 1.55501 1.27577 1.69696 1.84515 1.71216 1.45468 1.31323 0.92721 0.91567 0.90857 0.85971 0.91790 0.84411 0.87390 0.87453 0.87008 0.86900 0.70886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.50 12.77 21.45 0.27 -55.22 16 2 C 0.02 1.02 5.45 84.65 0.46 1.49 16 3 Si 0.96 46.58 29.54 68.60 2.03 48.61 16 4 H -0.27 -13.25 7.11 99.48 0.71 -12.55 16 5 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 6 H -0.28 -13.79 7.11 99.48 0.71 -13.08 16 7 C -0.49 -28.13 6.55 25.60 0.17 -27.97 16 8 H 0.04 2.40 7.76 -2.91 -0.02 2.38 16 9 C 0.23 11.72 3.41 44.90 0.15 11.87 16 10 H 0.03 1.71 7.25 -2.39 -0.02 1.69 16 11 C -0.12 -5.04 6.76 32.21 0.22 -4.83 16 12 C 0.04 1.31 7.74 86.89 0.67 1.98 16 13 N -0.46 -15.12 7.19 -181.39 -1.30 -16.42 16 14 N -0.47 -20.28 3.66 -440.09 -1.61 -21.89 16 15 C 0.51 21.90 7.70 87.66 0.67 22.57 16 16 O -0.57 -29.37 14.55 -3.03 -0.04 -29.41 16 17 C -0.10 -3.15 4.35 29.85 0.13 -3.02 16 18 C -0.10 -2.62 5.10 29.85 0.15 -2.47 16 19 C 0.50 11.67 8.33 71.24 0.59 12.27 16 20 O -0.54 -15.26 16.74 21.97 0.37 -14.89 16 21 O -0.51 -9.03 13.42 -51.44 -0.69 -9.72 16 22 H 0.26 14.93 8.32 -92.71 -0.77 14.15 16 23 H 0.07 2.74 8.05 -2.39 -0.02 2.72 16 24 H 0.07 2.93 8.14 -2.38 -0.02 2.91 16 25 H 0.12 2.86 8.14 -2.38 -0.02 2.84 16 26 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.34 9.10 8.82 -210.56 -1.86 7.24 16 28 H 0.11 3.11 8.10 -2.39 -0.02 3.09 16 29 H 0.11 2.84 8.10 -2.39 -0.02 2.82 16 30 H 0.11 3.06 8.10 -2.38 -0.02 3.04 16 31 H 0.11 3.03 8.10 -2.39 -0.02 3.01 16 32 H 0.43 3.41 9.10 -74.05 -0.67 2.74 16 Total: -1.00 -74.89 280.71 0.86 -74.03 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -1.38 Total: 13.04 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: 3.22 Total: 11.89 kcal Atomic # 7 Polarization: -90.89 SS G_CDS: -2.64 Total: -93.53 kcal Atomic # 8 Polarization: -53.66 SS G_CDS: -0.37 Total: -54.03 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Total: -74.89 0.86 -74.03 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075620337.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.375 kcal (2) G-P(sol) polarization free energy of solvation -74.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds