Wall clock time and date at job start Mon Mar 30 2020 03:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46498 * 120.00478 * 2 1 4 4 C 1.50700 * 109.47329 * 270.00425 * 3 2 1 5 5 H 1.08002 * 119.99601 * 359.97438 * 4 3 2 6 6 C 1.37879 * 120.00332 * 179.97438 * 4 3 2 7 7 N 1.31512 * 119.99744 * 179.97438 * 6 4 3 8 8 Si 1.86796 * 119.99828 * 359.97438 * 6 4 3 9 9 H 1.48504 * 109.46842 * 90.00272 * 8 6 4 10 10 H 1.48501 * 109.47060 * 210.00138 * 8 6 4 11 11 H 1.48497 * 109.47460 * 330.00500 * 8 6 4 12 12 C 1.34780 * 119.99997 * 179.97438 * 2 1 3 13 13 O 1.21587 * 120.00189 * 183.83138 * 12 2 1 14 14 N 1.34774 * 119.99919 * 3.83484 * 12 2 1 15 15 C 1.47584 * 134.49408 * 174.46040 * 14 12 2 16 16 C 1.53940 * 86.11667 * 155.35275 * 15 14 12 17 17 C 1.50700 * 113.73918 * 137.95255 * 16 15 14 18 18 O 1.20826 * 120.00265 * 1.92514 * 17 16 15 19 19 O 1.34234 * 119.99771 * 181.64472 * 17 16 15 20 20 C 1.47812 * 134.45809 * 354.31789 * 14 12 2 21 21 H 1.09004 * 109.46944 * 264.12789 * 1 2 3 22 22 H 1.09002 * 109.46952 * 24.11977 * 1 2 3 23 23 H 1.09000 * 109.47081 * 144.12773 * 1 2 3 24 24 H 1.09008 * 109.46761 * 29.99531 * 3 2 1 25 25 H 1.09001 * 109.47792 * 149.99736 * 3 2 1 26 26 H 0.97000 * 119.99438 * 179.97438 * 7 6 4 27 27 H 1.08999 * 113.76842 * 41.05207 * 15 14 12 28 28 H 1.09000 * 113.76882 * 269.65801 * 15 14 12 29 29 H 1.09002 * 113.74178 * 269.15020 * 16 15 14 30 30 H 0.96705 * 116.99977 * 179.97438 * 19 17 16 31 31 H 1.08999 * 113.76946 * 90.37906 * 20 14 12 32 32 H 1.09009 * 113.83359 * 318.92221 * 20 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0981 1.0958 -2.2417 6 6 3.1261 2.8779 -1.6728 7 7 3.3457 3.2573 -2.9127 8 14 3.7320 3.9298 -0.2530 9 1 5.1054 3.5090 0.1239 10 1 3.7469 5.3564 -0.6650 11 1 2.8255 3.7601 0.9109 12 6 2.1389 -1.1672 0.0005 13 8 3.3527 -1.1684 0.0709 14 7 1.4673 -2.3331 -0.0770 15 6 1.8641 -3.7490 -0.2027 16 6 0.5086 -4.0781 0.4486 17 6 -0.2034 -5.2436 -0.1883 18 8 0.3159 -5.8444 -1.0990 19 8 -1.4120 -5.6179 0.2599 20 6 0.0372 -2.7066 -0.0677 21 1 -0.3633 -0.1051 1.0223 22 1 -0.3633 0.9380 -0.4200 23 1 -0.3633 -0.8327 -0.6022 24 1 1.6085 2.0284 0.5138 25 1 3.1500 1.1384 0.5139 26 1 3.8219 4.0835 -3.0899 27 1 2.7235 -4.0205 0.4105 28 1 1.9508 -4.0912 -1.2339 29 1 0.5493 -4.1475 1.5356 30 1 -1.8297 -6.3709 -0.1803 31 1 -0.4142 -2.7418 -1.0592 32 1 -0.5595 -2.1473 0.6530 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084407660.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:20 Heat of formation + Delta-G solvation = -59.646448 kcal Electronic energy + Delta-G solvation = -17512.292660 eV Core-core repulsion = 14475.507271 eV Total energy + Delta-G solvation = -3036.785390 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.11010 -39.63868 -37.56409 -36.31116 -34.92512 -32.53776 -30.24290 -28.41920 -26.55102 -25.92596 -24.29583 -22.07938 -20.42144 -19.05273 -18.43817 -17.39438 -16.89938 -16.68267 -16.30717 -15.56349 -15.02817 -14.28353 -14.19651 -13.53500 -13.42822 -13.01015 -12.75449 -12.62996 -12.36920 -12.14870 -12.04544 -11.82965 -11.49575 -11.08980 -10.87616 -10.68343 -10.49266 -10.14177 -9.56337 -9.35269 -8.57451 -8.56763 -7.62603 -6.06764 -4.05489 1.86700 2.52476 2.95542 3.31257 3.37240 3.39109 3.82710 3.92811 4.11552 4.41471 4.68796 4.83331 5.00999 5.20369 5.25607 5.30244 5.49951 5.57088 5.69822 5.77249 5.87582 6.11990 6.19318 6.64202 6.91481 7.32867 7.57433 7.59262 7.67699 8.49700 8.54425 8.96374 9.21405 9.53806 11.06789 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.050269 B = 0.005129 C = 0.005073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.873865 B = 5458.058242 C = 5518.010864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.609 5.609 3 C 0.231 3.769 4 C -0.530 4.530 5 H 0.073 0.927 6 C 0.072 3.928 7 N -0.898 5.898 8 Si 0.878 3.122 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.266 1.266 12 C 0.732 3.268 13 O -0.577 6.577 14 N -0.669 5.669 15 C 0.151 3.849 16 C -0.128 4.128 17 C 0.492 3.508 18 O -0.509 6.509 19 O -0.514 6.514 20 C 0.123 3.877 21 H 0.042 0.958 22 H 0.077 0.923 23 H 0.061 0.939 24 H 0.031 0.969 25 H 0.038 0.962 26 H 0.264 0.736 27 H 0.091 0.909 28 H 0.094 0.906 29 H 0.137 0.863 30 H 0.410 0.590 31 H 0.086 0.914 32 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.950 -14.683 8.764 20.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.344 5.344 3 C 0.110 3.890 4 C -0.569 4.569 5 H 0.091 0.909 6 C -0.130 4.130 7 N -0.537 5.537 8 Si 0.704 3.296 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.190 1.190 12 C 0.436 3.564 13 O -0.454 6.454 14 N -0.412 5.412 15 C 0.027 3.973 16 C -0.148 4.148 17 C 0.333 3.667 18 O -0.396 6.396 19 O -0.326 6.326 20 C -0.001 4.001 21 H 0.060 0.940 22 H 0.096 0.904 23 H 0.079 0.921 24 H 0.049 0.951 25 H 0.056 0.944 26 H 0.074 0.926 27 H 0.109 0.891 28 H 0.112 0.888 29 H 0.155 0.845 30 H 0.269 0.731 31 H 0.104 0.896 32 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -10.713 -14.082 8.653 19.697 hybrid contribution -0.084 0.127 0.144 0.209 sum -10.797 -13.956 8.797 19.716 Atomic orbital electron populations 1.21966 0.81488 1.03410 0.99703 1.47034 1.05743 1.05489 1.76175 1.19611 0.92300 0.78805 0.98261 1.21379 1.36983 1.07116 0.91403 0.90859 1.24855 0.95215 0.97349 0.95621 1.69903 1.41531 1.23557 1.18686 0.86831 0.80186 0.79672 0.82866 1.19854 1.21083 1.19041 1.15316 0.84512 0.78786 0.77754 1.90899 1.11442 1.85073 1.57984 1.49006 1.06889 1.05287 1.79971 1.22821 0.94662 0.78282 1.01536 1.23258 0.97272 0.91132 1.03140 1.23171 0.79028 0.83930 0.80592 1.90755 1.66295 1.53898 1.28672 1.84552 1.33288 1.52236 1.62523 1.23214 0.85930 0.89552 1.01396 0.93956 0.90448 0.92082 0.95108 0.94378 0.92569 0.89060 0.88751 0.84528 0.73093 0.89613 0.88388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.21 9.11 59.85 0.55 1.76 16 2 N -0.61 -13.05 2.86 -188.74 -0.54 -13.59 16 3 C 0.23 5.78 4.23 -5.19 -0.02 5.76 16 4 C -0.53 -15.55 9.94 -34.44 -0.34 -15.89 16 5 H 0.07 2.37 8.06 -52.49 -0.42 1.95 16 6 C 0.07 2.12 5.47 -17.82 -0.10 2.03 16 7 N -0.90 -28.06 13.96 55.43 0.77 -27.28 16 8 Si 0.88 21.76 27.47 -169.99 -4.67 17.09 16 9 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 11 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 12 C 0.73 15.98 8.51 -86.92 -0.74 15.24 16 13 O -0.58 -15.23 16.63 5.29 0.09 -15.14 16 14 N -0.67 -10.74 3.59 -183.99 -0.66 -11.40 16 15 C 0.15 1.95 8.18 -2.97 -0.02 1.93 16 16 C -0.13 -1.20 4.44 -90.85 -0.40 -1.60 16 17 C 0.49 4.58 7.86 36.01 0.28 4.86 16 18 O -0.51 -6.42 16.67 -18.75 -0.31 -6.73 16 19 O -0.51 -3.37 13.42 -39.27 -0.53 -3.90 16 20 C 0.12 1.31 5.54 -2.84 -0.02 1.30 16 21 H 0.04 0.53 7.75 -51.93 -0.40 0.13 16 22 H 0.08 1.24 8.03 -51.93 -0.42 0.82 16 23 H 0.06 0.81 4.76 -51.93 -0.25 0.56 16 24 H 0.03 0.72 7.13 -51.92 -0.37 0.35 16 25 H 0.04 1.02 6.80 -51.93 -0.35 0.67 16 26 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 27 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.09 1.27 7.44 -51.93 -0.39 0.89 16 29 H 0.14 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.41 1.04 9.10 45.56 0.41 1.45 16 31 H 0.09 0.87 7.84 -51.93 -0.41 0.46 16 32 H 0.10 0.86 6.40 -51.92 -0.33 0.53 16 LS Contribution 276.52 15.07 4.17 4.17 Total: -1.00 -38.22 276.52 -5.43 -43.65 By element: Atomic # 1 Polarization: 0.68 SS G_CDS: -2.94 Total: -2.25 kcal Atomic # 6 Polarization: 16.20 SS G_CDS: -0.82 Total: 15.38 kcal Atomic # 7 Polarization: -51.85 SS G_CDS: -0.43 Total: -52.27 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -0.75 Total: -25.77 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -38.22 -5.43 -43.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084407660.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.996 kcal (2) G-P(sol) polarization free energy of solvation -38.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds