Wall clock time and date at job start Mon Mar 30 2020 03:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46498 * 120.00478 * 2 1 4 4 C 1.50700 * 109.47329 * 270.00425 * 3 2 1 5 5 H 1.08002 * 119.99601 * 359.97438 * 4 3 2 6 6 C 1.37879 * 120.00332 * 179.97438 * 4 3 2 7 7 N 1.31512 * 119.99744 * 179.97438 * 6 4 3 8 8 Si 1.86796 * 119.99828 * 359.97438 * 6 4 3 9 9 H 1.48504 * 109.46842 * 90.00272 * 8 6 4 10 10 H 1.48501 * 109.47060 * 210.00138 * 8 6 4 11 11 H 1.48497 * 109.47460 * 330.00500 * 8 6 4 12 12 C 1.34780 * 119.99997 * 179.97438 * 2 1 3 13 13 O 1.21587 * 120.00189 * 183.83138 * 12 2 1 14 14 N 1.34774 * 119.99919 * 3.83484 * 12 2 1 15 15 C 1.47584 * 134.49408 * 174.46040 * 14 12 2 16 16 C 1.53940 * 86.11667 * 155.35275 * 15 14 12 17 17 C 1.50700 * 113.73918 * 137.95255 * 16 15 14 18 18 O 1.20826 * 120.00265 * 1.92514 * 17 16 15 19 19 O 1.34234 * 119.99771 * 181.64472 * 17 16 15 20 20 C 1.47812 * 134.45809 * 354.31789 * 14 12 2 21 21 H 1.09004 * 109.46944 * 264.12789 * 1 2 3 22 22 H 1.09002 * 109.46952 * 24.11977 * 1 2 3 23 23 H 1.09000 * 109.47081 * 144.12773 * 1 2 3 24 24 H 1.09008 * 109.46761 * 29.99531 * 3 2 1 25 25 H 1.09001 * 109.47792 * 149.99736 * 3 2 1 26 26 H 0.97000 * 119.99438 * 179.97438 * 7 6 4 27 27 H 1.08999 * 113.76842 * 41.05207 * 15 14 12 28 28 H 1.09000 * 113.76882 * 269.65801 * 15 14 12 29 29 H 1.09002 * 113.74178 * 269.15020 * 16 15 14 30 30 H 0.96705 * 116.99977 * 179.97438 * 19 17 16 31 31 H 1.08999 * 113.76946 * 90.37906 * 20 14 12 32 32 H 1.09009 * 113.83359 * 318.92221 * 20 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0981 1.0958 -2.2417 6 6 3.1261 2.8779 -1.6728 7 7 3.3457 3.2573 -2.9127 8 14 3.7320 3.9298 -0.2530 9 1 5.1054 3.5090 0.1239 10 1 3.7469 5.3564 -0.6650 11 1 2.8255 3.7601 0.9109 12 6 2.1389 -1.1672 0.0005 13 8 3.3527 -1.1684 0.0709 14 7 1.4673 -2.3331 -0.0770 15 6 1.8641 -3.7490 -0.2027 16 6 0.5086 -4.0781 0.4486 17 6 -0.2034 -5.2436 -0.1883 18 8 0.3159 -5.8444 -1.0990 19 8 -1.4120 -5.6179 0.2599 20 6 0.0372 -2.7066 -0.0677 21 1 -0.3633 -0.1051 1.0223 22 1 -0.3633 0.9380 -0.4200 23 1 -0.3633 -0.8327 -0.6022 24 1 1.6085 2.0284 0.5138 25 1 3.1500 1.1384 0.5139 26 1 3.8219 4.0835 -3.0899 27 1 2.7235 -4.0205 0.4105 28 1 1.9508 -4.0912 -1.2339 29 1 0.5493 -4.1475 1.5356 30 1 -1.8297 -6.3709 -0.1803 31 1 -0.4142 -2.7418 -1.0592 32 1 -0.5595 -2.1473 0.6530 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084407660.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:20 Heat of formation + Delta-G solvation = -90.351702 kcal Electronic energy + Delta-G solvation = -17513.624140 eV Core-core repulsion = 14475.507271 eV Total energy + Delta-G solvation = -3038.116870 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.08687 -40.79753 -38.84591 -37.02828 -36.66315 -34.69774 -31.67023 -30.05633 -27.88719 -27.05906 -25.58529 -23.79351 -21.36347 -20.37562 -19.21861 -19.11546 -18.38891 -17.88113 -17.65963 -16.71273 -16.56470 -15.93219 -15.50989 -14.84307 -14.77870 -14.39822 -14.15382 -13.84330 -13.65263 -13.61836 -13.25911 -13.17764 -12.80865 -12.53011 -12.42780 -12.02183 -11.90912 -11.74961 -11.65582 -11.04189 -10.82380 -9.99502 -9.20908 -8.33770 -6.39411 1.12847 1.32473 1.39082 1.39984 1.48119 2.01195 2.32418 2.37042 2.75395 3.01006 3.05781 3.74304 4.05203 4.25139 4.32398 4.34306 4.46974 4.50648 4.60102 4.66711 4.81882 4.91063 4.93638 4.99655 5.45564 5.60284 5.62861 6.12271 6.27207 6.61581 7.01282 7.03638 7.22421 7.61207 8.83591 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.050269 B = 0.005129 C = 0.005073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.873865 B = 5458.058242 C = 5518.010864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.620 5.620 3 C 0.240 3.760 4 C -0.540 4.540 5 H 0.023 0.977 6 C 0.010 3.990 7 N -0.948 5.948 8 Si 0.952 3.048 9 H -0.277 1.277 10 H -0.274 1.274 11 H -0.234 1.234 12 C 0.721 3.279 13 O -0.640 6.640 14 N -0.673 5.673 15 C 0.136 3.864 16 C -0.101 4.101 17 C 0.505 3.495 18 O -0.547 6.547 19 O -0.502 6.502 20 C 0.120 3.880 21 H 0.083 0.917 22 H 0.069 0.931 23 H 0.083 0.917 24 H 0.057 0.943 25 H 0.019 0.981 26 H 0.269 0.731 27 H 0.091 0.909 28 H 0.084 0.916 29 H 0.167 0.833 30 H 0.431 0.569 31 H 0.095 0.905 32 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.195 -15.139 11.254 23.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.355 5.355 3 C 0.118 3.882 4 C -0.578 4.578 5 H 0.041 0.959 6 C -0.188 4.188 7 N -0.588 5.588 8 Si 0.774 3.226 9 H -0.203 1.203 10 H -0.199 1.199 11 H -0.157 1.157 12 C 0.425 3.575 13 O -0.522 6.522 14 N -0.414 5.414 15 C 0.013 3.987 16 C -0.121 4.121 17 C 0.347 3.653 18 O -0.437 6.437 19 O -0.315 6.315 20 C -0.001 4.001 21 H 0.102 0.898 22 H 0.088 0.912 23 H 0.101 0.899 24 H 0.075 0.925 25 H 0.037 0.963 26 H 0.078 0.922 27 H 0.109 0.891 28 H 0.102 0.898 29 H 0.184 0.816 30 H 0.293 0.707 31 H 0.113 0.887 32 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -13.084 -14.609 11.154 22.562 hybrid contribution 0.512 0.113 -0.727 0.897 sum -12.572 -14.496 10.427 21.838 Atomic orbital electron populations 1.22314 0.77932 1.04100 1.02692 1.47027 1.07976 1.04304 1.76173 1.19277 0.92605 0.81201 0.95137 1.21611 1.36994 1.06729 0.92494 0.95856 1.25896 0.95151 0.98953 0.98822 1.70061 1.42733 1.24513 1.21456 0.85656 0.79593 0.77579 0.79734 1.20287 1.19895 1.15676 1.15601 0.84085 0.80216 0.77586 1.90832 1.14328 1.86410 1.60604 1.49019 1.09701 1.04505 1.78205 1.23016 0.97294 0.76727 1.01622 1.23002 0.94216 0.90547 1.04315 1.22923 0.79439 0.83337 0.79586 1.90767 1.67381 1.55230 1.30327 1.84491 1.31738 1.53099 1.62179 1.23569 0.83284 0.90229 1.03010 0.89840 0.91178 0.89886 0.92533 0.96301 0.92232 0.89090 0.89821 0.81553 0.70704 0.88742 0.85274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.02 9.11 127.77 1.16 3.19 16 2 N -0.62 -26.18 2.86 -869.29 -2.48 -28.66 16 3 C 0.24 12.00 4.23 85.63 0.36 12.36 16 4 C -0.54 -32.60 9.94 25.60 0.25 -32.35 16 5 H 0.02 1.58 8.06 -2.91 -0.02 1.56 16 6 C 0.01 0.57 5.47 84.66 0.46 1.04 16 7 N -0.95 -60.98 13.96 21.45 0.30 -60.68 16 8 Si 0.95 44.86 27.47 68.60 1.88 46.75 16 9 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 10 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 11 H -0.23 -9.74 6.54 99.48 0.65 -9.09 16 12 C 0.72 31.67 8.51 179.05 1.52 33.19 16 13 O -0.64 -35.02 16.63 -3.99 -0.07 -35.08 16 14 N -0.67 -20.88 3.59 -854.28 -3.07 -23.94 16 15 C 0.14 3.43 8.18 86.48 0.71 4.14 16 16 C -0.10 -1.57 4.44 -10.88 -0.05 -1.62 16 17 C 0.50 7.89 7.86 71.24 0.56 8.45 16 18 O -0.55 -12.92 16.67 21.96 0.37 -12.55 16 19 O -0.50 -4.53 13.42 -51.46 -0.69 -5.22 16 20 C 0.12 2.17 5.54 86.44 0.48 2.65 16 21 H 0.08 1.71 7.75 -2.38 -0.02 1.69 16 22 H 0.07 2.10 8.03 -2.39 -0.02 2.08 16 23 H 0.08 1.95 4.76 -2.39 -0.01 1.94 16 24 H 0.06 2.52 7.13 -2.38 -0.02 2.51 16 25 H 0.02 1.02 6.80 -2.39 -0.02 1.00 16 26 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 27 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.08 2.29 7.44 -2.39 -0.02 2.28 16 29 H 0.17 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.43 0.54 9.10 -74.05 -0.67 -0.13 16 31 H 0.09 1.60 7.84 -2.39 -0.02 1.58 16 32 H 0.13 1.59 6.40 -2.38 -0.02 1.57 16 Total: -1.00 -88.43 276.52 2.13 -86.30 By element: Atomic # 1 Polarization: 1.62 SS G_CDS: 0.42 Total: 2.05 kcal Atomic # 6 Polarization: 25.59 SS G_CDS: 5.46 Total: 31.05 kcal Atomic # 7 Polarization: -108.03 SS G_CDS: -5.25 Total: -113.28 kcal Atomic # 8 Polarization: -52.47 SS G_CDS: -0.39 Total: -52.86 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 1.88 Total: 46.75 kcal Total: -88.43 2.13 -86.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084407660.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.056 kcal (2) G-P(sol) polarization free energy of solvation -88.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds