Wall clock time and date at job start Mon Mar 30 2020 03:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47503 * 2 1 4 4 C 1.50706 * 109.47204 * 120.00068 * 2 1 3 5 5 H 1.07998 * 119.99628 * 120.00164 * 4 2 1 6 6 C 1.37871 * 119.99847 * 299.99643 * 4 2 1 7 7 N 1.31507 * 120.00190 * 179.97438 * 6 4 2 8 8 Si 1.86806 * 120.00193 * 0.02562 * 6 4 2 9 9 H 1.48499 * 109.47081 * 89.99276 * 8 6 4 10 10 H 1.48499 * 109.47356 * 209.99897 * 8 6 4 11 11 H 1.48503 * 109.46728 * 329.99994 * 8 6 4 12 12 N 1.46906 * 109.47029 * 239.99825 * 2 1 3 13 13 C 1.46898 * 110.99888 * 306.04751 * 12 2 1 14 14 C 1.46902 * 110.99573 * 70.00117 * 12 2 1 15 15 C 1.50708 * 109.46760 * 169.99885 * 14 12 2 16 16 N 1.29316 * 126.06260 * 89.68893 * 15 14 12 17 17 N 1.26103 * 117.96767 * 179.75606 * 16 15 14 18 18 C 1.30243 * 117.61962 * 0.55446 * 17 16 15 19 19 N 1.38706 * 126.16669 * 179.70471 * 18 17 16 20 20 S 1.76480 * 126.06567 * 270.00156 * 15 14 12 21 21 H 1.09002 * 109.46786 * 300.00439 * 1 2 3 22 22 H 1.08999 * 109.46789 * 60.00096 * 1 2 3 23 23 H 1.08998 * 109.47056 * 180.02562 * 1 2 3 24 24 H 0.96996 * 120.00773 * 180.02562 * 7 6 4 25 25 H 1.08997 * 109.47334 * 60.00212 * 13 12 2 26 26 H 1.09000 * 109.46674 * 180.02562 * 13 12 2 27 27 H 1.08995 * 109.47296 * 299.99911 * 13 12 2 28 28 H 1.08993 * 109.47196 * 289.99473 * 14 12 2 29 29 H 1.09000 * 109.47010 * 50.00282 * 14 12 2 30 30 H 0.97002 * 119.99635 * 180.02562 * 19 18 17 31 31 H 0.96998 * 119.99626 * 0.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 2.1373 -0.8595 3.5565 8 14 0.6249 1.2791 2.6541 9 1 -0.8027 0.8727 2.6997 10 1 0.9760 1.9952 3.9068 11 1 0.8471 2.1765 1.4920 12 7 2.0197 -0.6926 -1.1995 13 6 1.4343 -2.0355 -1.3078 14 6 1.7529 0.0972 -2.4090 15 6 2.4774 -0.5163 -3.5795 16 7 2.0108 -1.4256 -4.3719 17 7 2.7507 -1.8287 -5.3101 18 6 3.9400 -1.3068 -5.4080 19 7 4.8961 -1.6217 -6.3623 20 16 4.1159 -0.1270 -4.1071 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.9027 -0.5284 4.4375 25 1 0.3490 -1.9549 -1.3693 26 1 1.8140 -2.5261 -2.2040 27 1 1.7058 -2.6221 -0.4302 28 1 0.6814 0.1052 -2.6087 29 1 2.1025 1.1189 -2.2603 30 1 5.7574 -1.1757 -6.3514 31 1 4.7032 -2.2879 -7.0405 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087692257.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:12 Heat of formation + Delta-G solvation = 85.291080 kcal Electronic energy + Delta-G solvation = -15303.534340 eV Core-core repulsion = 12748.079536 eV Total energy + Delta-G solvation = -2555.454805 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 242.090 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.70878 -37.57380 -35.28278 -32.86322 -31.07839 -29.15970 -27.36168 -25.31981 -25.11212 -23.18136 -20.25113 -19.36779 -19.24670 -16.88256 -16.65219 -16.26849 -15.69234 -15.09606 -14.39011 -14.17545 -13.60679 -13.22241 -12.98451 -12.51381 -12.19281 -11.77180 -11.48958 -11.25637 -11.15694 -10.91332 -10.43006 -10.18861 -10.02496 -9.85928 -9.57887 -9.36923 -9.08497 -8.59255 -8.29496 -7.43813 -6.06501 -4.05013 0.76797 0.85378 1.50300 2.87591 3.22838 3.25938 3.34870 3.38280 4.38960 4.50452 4.94543 5.08254 5.25391 5.41966 5.80076 5.91636 6.09141 6.25156 6.29663 6.33064 6.52132 6.61802 6.71461 6.91702 7.08245 7.15868 7.58032 7.84695 7.97345 8.63265 8.92623 9.01792 9.54796 11.06577 Molecular weight = 242.09amu Principal moments of inertia in cm(-1) A = 0.048266 B = 0.005686 C = 0.005620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.974100 B = 4923.619183 C = 4980.971887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.182 3.818 3 H 0.042 0.958 4 C -0.501 4.501 5 H 0.083 0.917 6 C 0.070 3.930 7 N -0.899 5.899 8 Si 0.886 3.114 9 H -0.280 1.280 10 H -0.297 1.297 11 H -0.268 1.268 12 N -0.518 5.518 13 C 0.031 3.969 14 C 0.129 3.871 15 C 0.042 3.958 16 N -0.233 5.233 17 N -0.345 5.345 18 C 0.283 3.717 19 N -0.809 5.809 20 S 0.051 5.949 21 H 0.046 0.954 22 H 0.029 0.971 23 H 0.060 0.940 24 H 0.264 0.736 25 H 0.025 0.975 26 H 0.050 0.950 27 H 0.079 0.921 28 H 0.065 0.935 29 H 0.092 0.908 30 H 0.416 0.584 31 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.879 2.668 -17.113 17.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.075 3.925 3 H 0.059 0.941 4 C -0.539 4.539 5 H 0.101 0.899 6 C -0.131 4.131 7 N -0.537 5.537 8 Si 0.716 3.284 9 H -0.207 1.207 10 H -0.224 1.224 11 H -0.193 1.193 12 N -0.242 5.242 13 C -0.117 4.117 14 C -0.003 4.003 15 C -0.244 4.244 16 N -0.067 5.067 17 N -0.191 5.191 18 C -0.092 4.092 19 N -0.363 5.363 20 S 0.286 5.714 21 H 0.065 0.935 22 H 0.048 0.952 23 H 0.079 0.921 24 H 0.074 0.926 25 H 0.043 0.957 26 H 0.069 0.931 27 H 0.098 0.902 28 H 0.083 0.917 29 H 0.111 0.889 30 H 0.247 0.753 31 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 4.155 2.397 -16.970 17.635 hybrid contribution -1.109 0.768 -0.102 1.353 sum 3.045 3.165 -17.073 17.628 Atomic orbital electron populations 1.22853 1.01415 1.01446 0.99038 1.19829 0.88956 0.95248 0.88458 0.94072 1.20888 1.31581 1.13827 0.87592 0.89948 1.24901 0.95867 0.96594 0.95775 1.69869 1.45696 1.40299 0.97874 0.86898 0.80618 0.83891 0.76960 1.20727 1.22437 1.19311 1.62239 1.58946 1.02738 1.00290 1.22328 0.96737 0.90792 1.01838 1.20568 0.96899 0.96768 0.86099 1.29399 0.92614 0.99743 1.02608 1.70743 1.26381 1.09171 1.00422 1.71349 1.01075 1.27590 1.19115 1.26766 0.92618 0.95721 0.94057 1.41273 1.15171 1.47912 1.31937 1.85886 1.19405 1.40771 1.25368 0.93549 0.95157 0.92100 0.92608 0.95685 0.93134 0.90222 0.91724 0.88945 0.75298 0.75371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.01 7.92 37.16 0.29 -3.71 16 2 C 0.18 4.18 1.90 -68.86 -0.13 4.05 16 3 H 0.04 0.96 6.99 -51.93 -0.36 0.59 16 4 C -0.50 -13.73 8.55 -34.44 -0.29 -14.02 16 5 H 0.08 2.49 7.35 -52.49 -0.39 2.11 16 6 C 0.07 1.98 5.45 -17.82 -0.10 1.89 16 7 N -0.90 -27.11 13.96 55.43 0.77 -26.34 16 8 Si 0.89 21.44 24.37 -169.99 -4.14 17.30 16 9 H -0.28 -6.66 6.87 56.52 0.39 -6.27 16 10 H -0.30 -7.24 7.11 56.52 0.40 -6.84 16 11 H -0.27 -6.14 6.53 56.52 0.37 -5.77 16 12 N -0.52 -10.62 4.69 -237.73 -1.12 -11.74 16 13 C 0.03 0.63 8.64 60.06 0.52 1.15 16 14 C 0.13 2.20 5.16 -4.97 -0.03 2.17 16 15 C 0.04 0.69 6.44 -13.33 -0.09 0.61 16 16 N -0.23 -4.09 10.69 33.57 0.36 -3.74 16 17 N -0.34 -5.60 11.61 31.00 0.36 -5.24 16 18 C 0.28 3.64 9.05 -87.13 -0.79 2.85 16 19 N -0.81 -6.37 9.08 30.98 0.28 -6.08 16 20 S 0.05 0.68 23.54 -107.50 -2.53 -1.85 16 21 H 0.05 1.03 3.27 -51.93 -0.17 0.86 16 22 H 0.03 0.55 6.91 -51.93 -0.36 0.19 16 23 H 0.06 1.29 6.33 -51.93 -0.33 0.96 16 24 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 25 H 0.02 0.48 6.21 -51.93 -0.32 0.16 16 26 H 0.05 0.98 6.52 -51.93 -0.34 0.64 16 27 H 0.08 1.74 6.86 -51.93 -0.36 1.38 16 28 H 0.06 1.07 7.06 -51.93 -0.37 0.70 16 29 H 0.09 1.43 7.93 -51.93 -0.41 1.01 16 30 H 0.42 2.07 8.95 -40.82 -0.37 1.71 16 31 H 0.41 2.59 8.95 -40.82 -0.37 2.23 16 LS Contribution 263.20 15.07 3.97 3.97 Total: -1.00 -31.96 263.20 -5.97 -37.93 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -3.31 Total: 0.81 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: -0.61 Total: -5.02 kcal Atomic # 7 Polarization: -53.79 SS G_CDS: 0.66 Total: -53.13 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.14 Total: 17.30 kcal Atomic # 16 Polarization: 0.68 SS G_CDS: -2.53 Total: -1.85 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -31.96 -5.97 -37.93 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087692257.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.217 kcal (2) G-P(sol) polarization free energy of solvation -31.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds