Wall clock time and date at job start Mon Mar 30 2020 03:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47503 * 2 1 4 4 C 1.50706 * 109.47204 * 120.00068 * 2 1 3 5 5 H 1.07998 * 119.99628 * 120.00164 * 4 2 1 6 6 C 1.37871 * 119.99847 * 299.99643 * 4 2 1 7 7 N 1.31507 * 120.00190 * 179.97438 * 6 4 2 8 8 Si 1.86806 * 120.00193 * 0.02562 * 6 4 2 9 9 H 1.48499 * 109.47081 * 89.99276 * 8 6 4 10 10 H 1.48499 * 109.47356 * 209.99897 * 8 6 4 11 11 H 1.48503 * 109.46728 * 329.99994 * 8 6 4 12 12 N 1.46906 * 109.47029 * 239.99825 * 2 1 3 13 13 C 1.46898 * 110.99888 * 306.04751 * 12 2 1 14 14 C 1.46902 * 110.99573 * 70.00117 * 12 2 1 15 15 C 1.50708 * 109.46760 * 169.99885 * 14 12 2 16 16 N 1.29316 * 126.06260 * 89.68893 * 15 14 12 17 17 N 1.26103 * 117.96767 * 179.75606 * 16 15 14 18 18 C 1.30243 * 117.61962 * 0.55446 * 17 16 15 19 19 N 1.38706 * 126.16669 * 179.70471 * 18 17 16 20 20 S 1.76480 * 126.06567 * 270.00156 * 15 14 12 21 21 H 1.09002 * 109.46786 * 300.00439 * 1 2 3 22 22 H 1.08999 * 109.46789 * 60.00096 * 1 2 3 23 23 H 1.08998 * 109.47056 * 180.02562 * 1 2 3 24 24 H 0.96996 * 120.00773 * 180.02562 * 7 6 4 25 25 H 1.08997 * 109.47334 * 60.00212 * 13 12 2 26 26 H 1.09000 * 109.46674 * 180.02562 * 13 12 2 27 27 H 1.08995 * 109.47296 * 299.99911 * 13 12 2 28 28 H 1.08993 * 109.47196 * 289.99473 * 14 12 2 29 29 H 1.09000 * 109.47010 * 50.00282 * 14 12 2 30 30 H 0.97002 * 119.99635 * 180.02562 * 19 18 17 31 31 H 0.96998 * 119.99626 * 0.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 2.1373 -0.8595 3.5565 8 14 0.6249 1.2791 2.6541 9 1 -0.8027 0.8727 2.6997 10 1 0.9760 1.9952 3.9068 11 1 0.8471 2.1765 1.4920 12 7 2.0197 -0.6926 -1.1995 13 6 1.4343 -2.0355 -1.3078 14 6 1.7529 0.0972 -2.4090 15 6 2.4774 -0.5163 -3.5795 16 7 2.0108 -1.4256 -4.3719 17 7 2.7507 -1.8287 -5.3101 18 6 3.9400 -1.3068 -5.4080 19 7 4.8961 -1.6217 -6.3623 20 16 4.1159 -0.1270 -4.1071 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.9027 -0.5284 4.4375 25 1 0.3490 -1.9549 -1.3693 26 1 1.8140 -2.5261 -2.2040 27 1 1.7058 -2.6221 -0.4302 28 1 0.6814 0.1052 -2.6087 29 1 2.1025 1.1189 -2.2603 30 1 5.7574 -1.1757 -6.3514 31 1 4.7032 -2.2879 -7.0405 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087692257.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:12 Heat of formation + Delta-G solvation = 59.215452 kcal Electronic energy + Delta-G solvation = -15304.665064 eV Core-core repulsion = 12748.079536 eV Total energy + Delta-G solvation = -2556.585529 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 242.090 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.85171 -39.18149 -36.23094 -34.78125 -32.65122 -30.68059 -28.70071 -27.19258 -26.51067 -24.65867 -21.60181 -20.80915 -20.37941 -18.66629 -17.87298 -17.43528 -16.99154 -16.63328 -15.92224 -15.77085 -15.15811 -14.62078 -14.52161 -14.14532 -13.88840 -13.26403 -13.00132 -12.93213 -12.60445 -12.48683 -12.18088 -11.88682 -11.42331 -11.36168 -11.08545 -10.98803 -10.71937 -10.47144 -9.30944 -8.99668 -8.22700 -6.25909 -0.30651 -0.20796 0.38824 1.36103 1.40850 1.51215 1.71995 2.37028 2.37418 3.11312 3.20471 3.57175 3.98974 4.24866 4.42129 4.46375 4.55274 4.63435 4.68920 4.73380 4.84796 5.03033 5.21864 5.44950 5.64872 5.84329 6.01574 6.28931 6.48947 6.65977 6.80243 7.38368 7.80906 8.94288 Molecular weight = 242.09amu Principal moments of inertia in cm(-1) A = 0.048266 B = 0.005686 C = 0.005620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.974100 B = 4923.619183 C = 4980.971887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.186 3.814 3 H 0.048 0.952 4 C -0.501 4.501 5 H 0.036 0.964 6 C 0.011 3.989 7 N -0.951 5.951 8 Si 0.950 3.050 9 H -0.271 1.271 10 H -0.301 1.301 11 H -0.240 1.240 12 N -0.532 5.532 13 C 0.044 3.956 14 C 0.133 3.867 15 C 0.012 3.988 16 N -0.251 5.251 17 N -0.381 5.381 18 C 0.292 3.708 19 N -0.781 5.781 20 S 0.084 5.916 21 H 0.039 0.961 22 H 0.065 0.935 23 H 0.053 0.947 24 H 0.265 0.735 25 H 0.033 0.967 26 H 0.055 0.945 27 H 0.048 0.952 28 H 0.072 0.928 29 H 0.110 0.890 30 H 0.432 0.568 31 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.745 4.397 -19.288 20.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.078 3.922 3 H 0.066 0.934 4 C -0.540 4.540 5 H 0.054 0.946 6 C -0.185 4.185 7 N -0.592 5.592 8 Si 0.777 3.223 9 H -0.197 1.197 10 H -0.229 1.229 11 H -0.163 1.163 12 N -0.257 5.257 13 C -0.104 4.104 14 C 0.001 3.999 15 C -0.274 4.274 16 N -0.085 5.085 17 N -0.229 5.229 18 C -0.084 4.084 19 N -0.336 5.336 20 S 0.319 5.681 21 H 0.058 0.942 22 H 0.084 0.916 23 H 0.072 0.928 24 H 0.074 0.926 25 H 0.051 0.949 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.090 0.910 29 H 0.128 0.872 30 H 0.267 0.733 31 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 4.067 4.122 -19.219 20.072 hybrid contribution -0.872 0.115 0.420 0.975 sum 3.195 4.238 -18.799 19.534 Atomic orbital electron populations 1.22738 0.99654 1.01556 1.00379 1.19637 0.90190 0.94807 0.87566 0.93418 1.21126 1.30408 1.12479 0.89945 0.94611 1.25768 0.97466 1.00060 0.95249 1.70037 1.47973 1.42648 0.98565 0.85848 0.78812 0.80082 0.77568 1.19702 1.22931 1.16333 1.62060 1.59408 1.03004 1.01206 1.22132 0.97138 0.90657 1.00475 1.20567 0.97782 0.96954 0.84586 1.29212 0.94441 1.00759 1.03013 1.70672 1.27599 1.09429 1.00834 1.71289 1.02476 1.29235 1.19867 1.26966 0.92430 0.94707 0.94251 1.41400 1.14713 1.47182 1.30346 1.85681 1.17124 1.40406 1.24930 0.94225 0.91583 0.92769 0.92644 0.94858 0.92635 0.93295 0.90975 0.87196 0.73308 0.74027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.38 7.92 71.98 0.57 -6.81 16 2 C 0.19 8.30 1.90 44.17 0.08 8.38 16 3 H 0.05 2.09 6.99 -2.39 -0.02 2.07 16 4 C -0.50 -28.05 8.55 25.60 0.22 -27.83 16 5 H 0.04 2.28 7.35 -2.91 -0.02 2.26 16 6 C 0.01 0.65 5.45 84.65 0.46 1.11 16 7 N -0.95 -59.20 13.96 21.44 0.30 -58.90 16 8 Si 0.95 43.57 24.37 68.60 1.67 45.24 16 9 H -0.27 -11.94 6.87 99.48 0.68 -11.25 16 10 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 11 H -0.24 -9.84 6.53 99.48 0.65 -9.19 16 12 N -0.53 -21.41 4.69 -906.03 -4.25 -25.66 16 13 C 0.04 1.79 8.64 127.69 1.10 2.89 16 14 C 0.13 4.24 5.16 85.56 0.44 4.68 16 15 C 0.01 0.38 6.44 88.48 0.57 0.95 16 16 N -0.25 -8.51 10.69 -47.71 -0.51 -9.02 16 17 N -0.38 -11.78 11.61 -55.84 -0.65 -12.43 16 18 C 0.29 6.82 9.05 179.13 1.62 8.44 16 19 N -0.78 -9.83 9.08 -55.91 -0.51 -10.34 16 20 S 0.08 2.05 23.54 -56.49 -1.33 0.72 16 21 H 0.04 1.63 3.27 -2.39 -0.01 1.62 16 22 H 0.07 2.16 6.91 -2.39 -0.02 2.15 16 23 H 0.05 2.21 6.33 -2.39 -0.02 2.19 16 24 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 25 H 0.03 1.26 6.21 -2.39 -0.01 1.25 16 26 H 0.05 2.16 6.52 -2.39 -0.02 2.15 16 27 H 0.05 2.23 6.86 -2.39 -0.02 2.21 16 28 H 0.07 2.19 7.06 -2.39 -0.02 2.17 16 29 H 0.11 3.07 7.93 -2.39 -0.02 3.05 16 30 H 0.43 2.75 8.95 -92.71 -0.83 1.92 16 31 H 0.43 3.98 8.95 -92.71 -0.83 3.15 16 Total: -1.00 -70.62 263.20 -0.76 -71.38 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: -0.55 Total: 7.19 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: 5.07 Total: -8.18 kcal Atomic # 7 Polarization: -110.73 SS G_CDS: -5.62 Total: -116.35 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 1.67 Total: 45.24 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -1.33 Total: 0.72 kcal Total: -70.62 -0.76 -71.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087692257.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.597 kcal (2) G-P(sol) polarization free energy of solvation -70.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds