Wall clock time and date at job start Mon Mar 30 2020 03:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86806 * 119.99892 * 2 1 4 4 H 1.48501 * 109.47203 * 269.99895 * 3 2 1 5 5 H 1.48503 * 109.47215 * 30.00239 * 3 2 1 6 6 H 1.48504 * 109.47210 * 150.00028 * 3 2 1 7 7 C 1.38948 * 120.00340 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00188 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99886 * 359.97438 * 7 2 1 10 10 C 1.34778 * 120.00020 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99995 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99596 * 180.02562 * 10 9 7 13 13 N 1.46898 * 109.46961 * 180.02562 * 12 10 9 14 14 C 1.46892 * 111.00196 * 185.33577 * 13 12 10 15 15 C 1.50704 * 112.84794 * 64.83335 * 14 13 12 16 16 O 1.20829 * 119.99517 * 215.68662 * 15 14 13 17 17 O 1.34223 * 120.00443 * 35.95966 * 15 14 13 18 18 C 1.53783 * 113.61519 * 196.02475 * 14 13 12 19 19 C 1.53955 * 87.01796 * 89.23303 * 18 14 13 20 20 C 1.53776 * 113.61779 * 293.63590 * 14 13 12 21 21 H 0.97002 * 119.99724 * 359.97438 * 1 2 3 22 22 H 0.97001 * 119.99564 * 0.02562 * 9 7 2 23 23 H 1.09003 * 109.47335 * 60.00384 * 12 10 9 24 24 H 1.09003 * 109.47379 * 300.00036 * 12 10 9 25 25 H 1.00901 * 110.99672 * 61.37999 * 13 12 10 26 26 H 0.96694 * 117.00109 * 179.72836 * 17 15 14 27 27 H 1.09007 * 113.61309 * 203.74616 * 18 14 13 28 28 H 1.08990 * 113.61842 * 334.65607 * 18 14 13 29 29 H 1.09001 * 113.53762 * 270.81416 * 19 18 14 30 30 H 1.09002 * 113.74577 * 139.94559 * 19 18 14 31 31 H 1.09009 * 113.61357 * 25.34388 * 20 14 13 32 32 H 1.09005 * 113.61714 * 156.16785 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4455 2.6527 0.7001 6 1 3.5457 1.4403 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0016 11 8 3.2103 -3.5578 -0.0021 12 6 1.2438 -4.8629 -0.0022 13 7 2.1984 -5.9794 -0.0027 14 6 1.5027 -7.2668 -0.1308 15 6 0.7959 -7.4210 -1.4528 16 8 -0.2596 -8.0064 -1.5088 17 8 1.3416 -6.9129 -2.5689 18 6 2.3724 -8.4774 0.2476 19 6 1.8658 -8.2889 1.6892 20 6 0.6238 -7.6155 1.0819 21 1 -0.4850 0.8401 0.0004 22 1 0.3534 -2.3906 -0.0005 23 1 0.6168 -4.9201 -0.8920 24 1 0.6175 -4.9213 0.8880 25 1 2.7763 -5.9614 0.8243 26 1 0.8532 -7.0404 -3.3937 27 1 2.0455 -9.4104 -0.2115 28 1 3.4416 -8.2998 0.1329 29 1 2.4824 -7.6137 2.2825 30 1 1.6475 -9.2248 2.2036 31 1 0.2835 -6.7430 1.6398 32 1 -0.1829 -8.3113 0.8510 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088049576.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:58 Heat of formation + Delta-G solvation = -102.274330 kcal Electronic energy + Delta-G solvation = -17525.866194 eV Core-core repulsion = 14487.232321 eV Total energy + Delta-G solvation = -3038.633873 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.95382 -38.70818 -37.91935 -35.98970 -34.08423 -33.09834 -31.20547 -27.57069 -25.91771 -25.79877 -23.92597 -22.09731 -19.30377 -18.99781 -18.02915 -17.90319 -16.98764 -16.38241 -15.45157 -15.26691 -15.01496 -14.54342 -14.17829 -13.97030 -13.42297 -13.04724 -12.72742 -12.50879 -12.12398 -11.63312 -11.54384 -11.49284 -11.40153 -11.07435 -10.91764 -10.75906 -10.39411 -10.29621 -10.21872 -9.51333 -8.57926 -8.16504 -7.97181 -6.41997 -3.83028 2.16179 3.10602 3.18101 3.26741 3.32383 3.80579 3.89298 4.20551 4.24025 4.43845 4.60918 4.91861 5.08895 5.23570 5.39434 5.43549 5.56822 5.62398 5.73871 5.76226 5.84315 5.91619 6.05460 6.23419 6.52317 6.96056 7.43390 7.55012 8.00131 8.05168 8.60152 9.17145 9.52982 10.04148 10.75738 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.038699 B = 0.005247 C = 0.005058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.351924 B = 5335.320261 C = 5534.472817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.563 5.563 10 C 0.445 3.555 11 O -0.579 6.579 12 C 0.048 3.952 13 N -0.627 5.627 14 C 0.096 3.904 15 C 0.503 3.497 16 O -0.523 6.523 17 O -0.492 6.492 18 C -0.119 4.119 19 C -0.140 4.140 20 C -0.159 4.159 21 H 0.272 0.728 22 H 0.392 0.608 23 H 0.083 0.917 24 H 0.050 0.950 25 H 0.360 0.640 26 H 0.402 0.598 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.300 -14.480 0.841 14.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.429 4.429 8 H 0.122 0.878 9 N -0.200 5.200 10 C 0.230 3.770 11 O -0.463 6.463 12 C -0.085 4.085 13 N -0.261 5.261 14 C 0.002 3.998 15 C 0.345 3.655 16 O -0.412 6.412 17 O -0.301 6.301 18 C -0.156 4.156 19 C -0.177 4.177 20 C -0.199 4.199 21 H 0.082 0.918 22 H 0.225 0.775 23 H 0.101 0.899 24 H 0.068 0.932 25 H 0.182 0.818 26 H 0.260 0.740 27 H 0.110 0.890 28 H 0.109 0.891 29 H 0.106 0.894 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.476 -14.336 0.521 14.354 hybrid contribution -1.085 0.757 0.203 1.339 sum -0.610 -13.580 0.724 13.613 Atomic orbital electron populations 1.69615 1.05968 1.28192 1.50528 1.25270 0.95633 0.99751 0.97277 0.85845 0.79203 0.80733 0.78421 1.20371 1.20950 1.19394 1.19710 0.93393 0.82151 1.47638 0.87840 1.41846 1.09199 1.04556 1.64352 1.19610 0.88311 0.84423 0.84684 1.90530 1.13577 1.86962 1.55254 1.21724 0.94334 0.91070 1.01337 1.59918 1.20971 0.97788 1.47408 1.21996 0.95767 0.93617 0.88409 1.23123 0.82462 0.73820 0.86067 1.90690 1.22678 1.40773 1.87062 1.84738 1.54099 1.72840 1.18399 1.23063 1.00704 0.95648 0.96221 1.22872 0.97151 1.01625 0.96083 1.23674 0.98156 1.02200 0.95824 0.91849 0.77483 0.89896 0.93234 0.81800 0.74027 0.89003 0.89095 0.89418 0.90322 0.90259 0.88115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.62 13.05 55.50 0.72 -23.90 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.04 29.55 -169.99 -5.02 16.02 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 8 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 9 N -0.56 -14.35 5.29 -10.96 -0.06 -14.40 16 10 C 0.44 10.54 7.83 -10.98 -0.09 10.45 16 11 O -0.58 -15.68 15.89 5.55 0.09 -15.59 16 12 C 0.05 0.86 5.80 -4.98 -0.03 0.83 16 13 N -0.63 -10.11 5.82 -101.57 -0.59 -10.70 16 14 C 0.10 1.28 1.11 -131.94 -0.15 1.13 16 15 C 0.50 7.28 6.50 36.01 0.23 7.51 16 16 O -0.52 -8.31 16.67 -18.75 -0.31 -8.63 16 17 O -0.49 -6.68 13.27 -39.24 -0.52 -7.20 16 18 C -0.12 -1.24 7.35 -25.83 -0.19 -1.43 16 19 C -0.14 -1.31 7.75 -25.83 -0.20 -1.51 16 20 C -0.16 -1.83 7.03 -25.92 -0.18 -2.01 16 21 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 22 H 0.39 9.60 7.90 -40.82 -0.32 9.28 16 23 H 0.08 1.48 7.25 -51.93 -0.38 1.10 16 24 H 0.05 0.80 6.84 -51.93 -0.36 0.44 16 25 H 0.36 5.61 7.79 -39.29 -0.31 5.30 16 26 H 0.40 3.52 9.10 45.56 0.41 3.94 16 27 H 0.09 0.87 8.09 -51.92 -0.42 0.45 16 28 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.09 0.80 7.73 -51.93 -0.40 0.40 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.93 6.79 -51.92 -0.35 0.58 16 32 H 0.10 1.18 7.34 -51.93 -0.38 0.79 16 LS Contribution 279.99 15.07 4.22 4.22 Total: -1.00 -33.10 279.99 -5.17 -38.27 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: -2.86 Total: 14.95 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: -0.84 Total: 6.97 kcal Atomic # 7 Polarization: -49.08 SS G_CDS: 0.07 Total: -49.00 kcal Atomic # 8 Polarization: -30.67 SS G_CDS: -0.74 Total: -31.42 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -33.10 -5.17 -38.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088049576.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.008 kcal (2) G-P(sol) polarization free energy of solvation -33.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds