Wall clock time and date at job start Mon Mar 30 2020 03:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86806 * 119.99892 * 2 1 4 4 H 1.48501 * 109.47203 * 269.99895 * 3 2 1 5 5 H 1.48503 * 109.47215 * 30.00239 * 3 2 1 6 6 H 1.48504 * 109.47210 * 150.00028 * 3 2 1 7 7 C 1.38948 * 120.00340 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00188 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99886 * 359.97438 * 7 2 1 10 10 C 1.34778 * 120.00020 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99995 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99596 * 180.02562 * 10 9 7 13 13 N 1.46898 * 109.46961 * 180.02562 * 12 10 9 14 14 C 1.46892 * 111.00196 * 185.33577 * 13 12 10 15 15 C 1.50704 * 112.84794 * 64.83335 * 14 13 12 16 16 O 1.20829 * 119.99517 * 215.68662 * 15 14 13 17 17 O 1.34223 * 120.00443 * 35.95966 * 15 14 13 18 18 C 1.53783 * 113.61519 * 196.02475 * 14 13 12 19 19 C 1.53955 * 87.01796 * 89.23303 * 18 14 13 20 20 C 1.53776 * 113.61779 * 293.63590 * 14 13 12 21 21 H 0.97002 * 119.99724 * 359.97438 * 1 2 3 22 22 H 0.97001 * 119.99564 * 0.02562 * 9 7 2 23 23 H 1.09003 * 109.47335 * 60.00384 * 12 10 9 24 24 H 1.09003 * 109.47379 * 300.00036 * 12 10 9 25 25 H 1.00901 * 110.99672 * 61.37999 * 13 12 10 26 26 H 0.96694 * 117.00109 * 179.72836 * 17 15 14 27 27 H 1.09007 * 113.61309 * 203.74616 * 18 14 13 28 28 H 1.08990 * 113.61842 * 334.65607 * 18 14 13 29 29 H 1.09001 * 113.53762 * 270.81416 * 19 18 14 30 30 H 1.09002 * 113.74577 * 139.94559 * 19 18 14 31 31 H 1.09009 * 113.61357 * 25.34388 * 20 14 13 32 32 H 1.09005 * 113.61714 * 156.16785 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4455 2.6527 0.7001 6 1 3.5457 1.4403 0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0016 11 8 3.2103 -3.5578 -0.0021 12 6 1.2438 -4.8629 -0.0022 13 7 2.1984 -5.9794 -0.0027 14 6 1.5027 -7.2668 -0.1308 15 6 0.7959 -7.4210 -1.4528 16 8 -0.2596 -8.0064 -1.5088 17 8 1.3416 -6.9129 -2.5689 18 6 2.3724 -8.4774 0.2476 19 6 1.8658 -8.2889 1.6892 20 6 0.6238 -7.6155 1.0819 21 1 -0.4850 0.8401 0.0004 22 1 0.3534 -2.3906 -0.0005 23 1 0.6168 -4.9201 -0.8920 24 1 0.6175 -4.9213 0.8880 25 1 2.7763 -5.9614 0.8243 26 1 0.8532 -7.0404 -3.3937 27 1 2.0455 -9.4104 -0.2115 28 1 3.4416 -8.2998 0.1329 29 1 2.4824 -7.6137 2.2825 30 1 1.6475 -9.2248 2.2036 31 1 0.2835 -6.7430 1.6398 32 1 -0.1829 -8.3113 0.8510 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088049576.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:58 Heat of formation + Delta-G solvation = -128.756966 kcal Electronic energy + Delta-G solvation = -17527.014568 eV Core-core repulsion = 14487.232321 eV Total energy + Delta-G solvation = -3039.782247 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.01911 -40.17403 -39.38795 -37.11376 -36.03529 -34.47940 -33.24171 -28.92453 -27.27729 -26.80536 -25.64046 -23.04990 -21.15232 -19.99968 -19.93414 -19.14691 -18.15675 -17.77429 -16.99954 -16.45727 -16.40073 -16.10833 -15.84618 -15.42978 -14.90182 -14.26024 -14.14781 -13.70161 -13.47798 -13.38258 -13.00924 -12.78379 -12.54470 -12.47354 -12.41466 -12.11237 -11.79345 -11.66352 -11.51211 -11.30247 -10.40879 -10.02921 -9.51564 -8.47051 -5.96268 1.05992 1.38729 1.42823 1.55735 2.01723 2.13279 2.27323 2.63041 3.19440 3.27076 3.41105 3.56798 3.77398 4.06533 4.16730 4.30490 4.43503 4.45684 4.65121 4.74909 4.94363 4.96835 5.04109 5.23889 5.40867 5.49789 5.73404 6.00796 6.21756 6.57798 7.00501 7.11228 7.53454 8.08076 8.70445 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.038699 B = 0.005247 C = 0.005058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.351924 B = 5335.320261 C = 5534.472817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.013 4.013 3 Si 0.995 3.005 4 H -0.272 1.272 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.334 4.334 8 H 0.082 0.918 9 N -0.572 5.572 10 C 0.443 3.557 11 O -0.616 6.616 12 C 0.064 3.936 13 N -0.638 5.638 14 C 0.083 3.917 15 C 0.502 3.498 16 O -0.542 6.542 17 O -0.502 6.502 18 C -0.111 4.111 19 C -0.127 4.127 20 C -0.156 4.156 21 H 0.278 0.722 22 H 0.395 0.605 23 H 0.087 0.913 24 H 0.073 0.927 25 H 0.363 0.637 26 H 0.420 0.580 27 H 0.104 0.896 28 H 0.092 0.908 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.075 0.925 32 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.402 -15.039 1.279 15.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.213 4.213 3 Si 0.818 3.182 4 H -0.197 1.197 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.463 4.463 8 H 0.100 0.900 9 N -0.210 5.210 10 C 0.231 3.769 11 O -0.502 6.502 12 C -0.068 4.068 13 N -0.272 5.272 14 C -0.011 4.011 15 C 0.345 3.655 16 O -0.432 6.432 17 O -0.314 6.314 18 C -0.149 4.149 19 C -0.165 4.165 20 C -0.196 4.196 21 H 0.087 0.913 22 H 0.229 0.771 23 H 0.105 0.895 24 H 0.091 0.909 25 H 0.185 0.815 26 H 0.281 0.719 27 H 0.122 0.878 28 H 0.111 0.889 29 H 0.109 0.891 30 H 0.119 0.881 31 H 0.094 0.906 32 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.351 -14.916 0.944 14.950 hybrid contribution -1.058 0.874 0.015 1.372 sum -0.706 -14.042 0.959 14.092 Atomic orbital electron populations 1.69679 1.06940 1.29355 1.50283 1.26069 0.96528 1.02510 0.96168 0.84899 0.77923 0.76701 0.78638 1.19716 1.19581 1.19539 1.19698 0.92801 0.83861 1.49961 0.90035 1.41918 1.09288 1.04733 1.65015 1.20553 0.88173 0.85716 0.82502 1.90498 1.15471 1.87812 1.56390 1.21492 0.94039 0.88727 1.02559 1.59820 1.21132 0.98445 1.47847 1.22257 0.97150 0.93135 0.88516 1.23372 0.82182 0.73382 0.86565 1.90680 1.23375 1.41734 1.87416 1.84707 1.54672 1.72624 1.19375 1.23110 1.00365 0.94619 0.96813 1.22861 0.95565 1.02452 0.95580 1.23663 0.98765 1.02269 0.94896 0.91279 0.77126 0.89517 0.90921 0.81523 0.71933 0.87769 0.88897 0.89070 0.88112 0.90610 0.88131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.96 13.05 21.66 0.28 -49.68 16 2 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 3 Si 0.99 42.81 29.55 68.60 2.03 44.84 16 4 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 6 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 7 C -0.33 -18.96 9.68 84.04 0.81 -18.15 16 8 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 9 N -0.57 -29.57 5.29 -306.98 -1.62 -31.20 16 10 C 0.44 21.17 7.83 87.66 0.69 21.86 16 11 O -0.62 -33.84 15.89 -3.07 -0.05 -33.89 16 12 C 0.06 2.26 5.80 85.56 0.50 2.76 16 13 N -0.64 -19.90 5.82 -475.25 -2.77 -22.67 16 14 C 0.08 2.07 1.11 3.31 0.00 2.07 16 15 C 0.50 13.89 6.50 71.24 0.46 14.35 16 16 O -0.54 -16.56 16.67 21.95 0.37 -16.19 16 17 O -0.50 -13.14 13.27 -51.35 -0.68 -13.83 16 18 C -0.11 -2.07 7.35 31.18 0.23 -1.84 16 19 C -0.13 -2.03 7.75 31.18 0.24 -1.79 16 20 C -0.16 -3.27 7.03 31.12 0.22 -3.06 16 21 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 22 H 0.40 19.55 7.90 -92.71 -0.73 18.82 16 23 H 0.09 3.02 7.25 -2.39 -0.02 3.00 16 24 H 0.07 2.24 6.84 -2.39 -0.02 2.22 16 25 H 0.36 10.92 7.79 -89.69 -0.70 10.22 16 26 H 0.42 6.96 9.10 -74.06 -0.67 6.28 16 27 H 0.10 1.70 8.09 -2.38 -0.02 1.68 16 28 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.09 1.42 7.73 -2.39 -0.02 1.41 16 30 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.08 1.63 6.79 -2.38 -0.02 1.61 16 32 H 0.10 2.14 7.34 -2.38 -0.02 2.13 16 Total: -1.00 -70.38 279.99 0.26 -70.12 By element: Atomic # 1 Polarization: 37.43 SS G_CDS: -0.92 Total: 36.51 kcal Atomic # 6 Polarization: 12.36 SS G_CDS: 3.62 Total: 15.98 kcal Atomic # 7 Polarization: -99.43 SS G_CDS: -4.11 Total: -103.54 kcal Atomic # 8 Polarization: -63.54 SS G_CDS: -0.36 Total: -63.91 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -70.38 0.26 -70.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088049576.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.633 kcal (2) G-P(sol) polarization free energy of solvation -70.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds