Wall clock time and date at job start Mon Mar 30 2020 03:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31014 * 1 3 3 Si 1.86802 * 120.00062 * 2 1 4 4 H 1.48498 * 109.47434 * 240.00122 * 3 2 1 5 5 H 1.48502 * 109.47040 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47201 * 119.99859 * 3 2 1 7 7 C 1.39589 * 119.99992 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99677 * 180.02562 * 7 2 1 9 9 N 1.36116 * 120.00149 * 359.97438 * 7 2 1 10 10 C 1.34772 * 119.99900 * 179.97438 * 9 7 2 11 11 O 1.21499 * 120.00162 * 0.02562 * 10 9 7 12 12 C 1.48835 * 119.99836 * 180.02562 * 10 9 7 13 13 O 1.21442 * 119.99904 * 359.97438 * 12 10 9 14 14 N 1.34773 * 120.00219 * 180.02562 * 12 10 9 15 15 C 1.46493 * 120.00383 * 179.97438 * 14 12 10 16 16 C 1.53006 * 109.47570 * 179.97438 * 15 14 12 17 17 C 1.53778 * 113.61543 * 185.00314 * 16 15 14 18 18 C 1.53780 * 87.07576 * 220.01830 * 17 16 15 19 19 O 1.42903 * 113.61428 * 139.98514 * 18 17 16 20 20 C 1.53776 * 87.17872 * 25.39099 * 18 17 16 21 21 H 0.96996 * 119.99780 * 359.97438 * 1 2 3 22 22 H 0.97001 * 120.00095 * 0.02562 * 9 7 2 23 23 H 0.97001 * 119.99622 * 359.97438 * 14 12 10 24 24 H 1.08998 * 109.46875 * 59.99875 * 15 14 12 25 25 H 1.09003 * 109.47535 * 299.99825 * 15 14 12 26 26 H 1.09004 * 112.84350 * 316.19907 * 16 15 14 27 27 H 1.09004 * 113.61269 * 105.47250 * 17 16 15 28 28 H 1.09002 * 113.61517 * 334.56337 * 17 16 15 29 29 H 1.09004 * 113.61517 * 270.79752 * 18 17 16 30 30 H 0.96700 * 114.00311 * 181.52832 * 19 18 17 31 31 H 1.08999 * 113.61283 * 89.15127 * 20 18 17 32 32 H 1.08998 * 113.61479 * 220.06276 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2442 1.6177 0.0000 4 1 3.0979 1.6965 -1.2125 5 1 1.2792 2.7465 0.0006 6 1 3.0979 1.6964 1.2125 7 6 2.0081 -1.2089 -0.0005 8 1 3.0881 -1.2088 -0.0001 9 7 1.3275 -2.3877 -0.0005 10 6 2.0014 -3.5548 -0.0016 11 8 3.2164 -3.5548 -0.0021 12 6 1.2573 -4.8438 -0.0022 13 8 0.0429 -4.8438 -0.0012 14 7 1.9311 -6.0110 -0.0027 15 6 1.1987 -7.2797 -0.0027 16 6 2.1929 -8.4427 -0.0040 17 6 1.5262 -9.8229 -0.1270 18 6 2.5526 -10.3231 0.9032 19 8 2.0047 -11.2274 1.8646 20 6 2.6435 -8.8721 1.4042 21 1 -0.4849 0.8400 0.0004 22 1 0.3575 -2.3877 -0.0005 23 1 2.9011 -6.0109 -0.0031 24 1 0.5717 -7.3372 -0.8924 25 1 0.5724 -7.3377 0.8875 26 1 3.0185 -8.2929 -0.6998 27 1 1.6395 -10.2763 -1.1117 28 1 0.4982 -9.8451 0.2348 29 1 3.4769 -10.6894 0.4563 30 1 2.6399 -11.5273 2.5292 31 1 1.9214 -8.6338 2.1851 32 1 3.6573 -8.5590 1.6536 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091525353.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:03 Heat of formation + Delta-G solvation = -108.497736 kcal Electronic energy + Delta-G solvation = -16807.219035 eV Core-core repulsion = 13768.315294 eV Total energy + Delta-G solvation = -3038.903741 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.90690 -39.11220 -37.17501 -35.64551 -34.42487 -33.48594 -31.39122 -28.10815 -25.96565 -25.69632 -23.25624 -21.78493 -20.07180 -19.16266 -18.33920 -17.78498 -16.84827 -15.99461 -15.56535 -15.12525 -15.03540 -14.63720 -14.11709 -13.94323 -13.73719 -12.93987 -12.71098 -12.65057 -12.15936 -11.81229 -11.73645 -11.62813 -11.17913 -11.01071 -10.57961 -10.50139 -10.43891 -10.34089 -10.00923 -9.70779 -8.72182 -8.26747 -8.22431 -6.66842 -3.99332 2.46287 3.15544 3.17561 3.18457 3.40354 3.96106 4.06668 4.27613 4.34357 4.37865 4.59607 4.65549 5.05163 5.12974 5.18928 5.23358 5.53644 5.55371 5.66046 5.72471 5.87342 5.96703 6.06901 6.21768 6.79490 7.30922 7.39043 7.69452 7.88509 8.33326 8.63508 8.96285 9.32112 9.85411 10.47993 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.066917 B = 0.003930 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.327074 B = 7122.080964 C = 7339.842360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.031 3.969 3 Si 0.940 3.060 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.269 1.269 7 C -0.307 4.307 8 H 0.112 0.888 9 N -0.499 5.499 10 C 0.394 3.606 11 O -0.599 6.599 12 C 0.512 3.488 13 O -0.547 6.547 14 N -0.714 5.714 15 C 0.133 3.867 16 C -0.123 4.123 17 C -0.118 4.118 18 C 0.074 3.926 19 O -0.562 6.562 20 C -0.165 4.165 21 H 0.281 0.719 22 H 0.405 0.595 23 H 0.409 0.591 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.101 0.899 27 H 0.076 0.924 28 H 0.094 0.906 29 H 0.081 0.919 30 H 0.377 0.623 31 H 0.092 0.908 32 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.108 -15.917 1.126 16.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.176 4.176 3 Si 0.765 3.235 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.438 4.438 8 H 0.130 0.870 9 N -0.133 5.133 10 C 0.178 3.822 11 O -0.488 6.488 12 C 0.296 3.704 13 O -0.424 6.424 14 N -0.368 5.368 15 C 0.009 3.991 16 C -0.141 4.141 17 C -0.156 4.156 18 C 0.016 3.984 19 O -0.367 6.367 20 C -0.203 4.203 21 H 0.091 0.909 22 H 0.240 0.760 23 H 0.245 0.755 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.119 0.881 27 H 0.095 0.905 28 H 0.112 0.888 29 H 0.099 0.901 30 H 0.224 0.776 31 H 0.111 0.889 32 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.296 -15.669 0.769 16.030 hybrid contribution 0.764 0.703 0.307 1.083 sum 4.060 -14.965 1.076 15.543 Atomic orbital electron populations 1.69478 1.06524 1.29472 1.45218 1.25592 0.95630 1.00477 0.95883 0.85773 0.78866 0.79307 0.79504 1.19370 1.20590 1.19380 1.19839 0.93959 0.81917 1.48060 0.87025 1.41558 1.10499 1.04228 1.56995 1.18967 0.87813 0.84246 0.91180 1.90571 1.12904 1.86655 1.58652 1.20689 0.87499 0.85942 0.76221 1.90690 1.14088 1.88146 1.49518 1.45649 1.11080 1.04637 1.75451 1.21264 0.93912 0.81545 1.02391 1.22608 0.99221 0.94016 0.98288 1.23035 0.99862 0.94151 0.98586 1.23365 0.96739 0.87892 0.90452 1.86529 1.41296 1.65276 1.43592 1.23817 1.02640 0.96493 0.97303 0.90850 0.75983 0.75507 0.91359 0.91364 0.88109 0.90523 0.88769 0.90078 0.77602 0.88921 0.90926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.40 13.03 55.53 0.72 -22.67 16 2 C 0.03 0.81 5.51 -17.40 -0.10 0.72 16 3 Si 0.94 20.11 29.56 -169.99 -5.02 15.08 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 7 C -0.31 -8.51 9.67 -15.15 -0.15 -8.66 16 8 H 0.11 3.14 7.15 -52.48 -0.38 2.77 16 9 N -0.50 -13.46 5.25 -11.59 -0.06 -13.52 16 10 C 0.39 10.00 7.82 -11.88 -0.09 9.91 16 11 O -0.60 -16.09 16.03 5.37 0.09 -16.00 16 12 C 0.51 11.26 7.87 -11.88 -0.09 11.16 16 13 O -0.55 -13.05 16.47 5.42 0.09 -12.96 16 14 N -0.71 -12.18 5.55 -60.93 -0.34 -12.51 16 15 C 0.13 1.81 5.51 -4.04 -0.02 1.79 16 16 C -0.12 -1.23 3.75 -89.71 -0.34 -1.57 16 17 C -0.12 -1.08 7.48 -25.92 -0.19 -1.27 16 18 C 0.07 0.63 5.21 -25.92 -0.13 0.50 16 19 O -0.56 -5.16 13.67 -35.23 -0.48 -5.64 16 20 C -0.16 -1.56 7.48 -25.83 -0.19 -1.75 16 21 H 0.28 7.02 8.30 -40.82 -0.34 6.68 16 22 H 0.40 11.02 7.35 -40.82 -0.30 10.72 16 23 H 0.41 6.52 7.93 -40.82 -0.32 6.20 16 24 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.07 0.98 7.85 -51.93 -0.41 0.57 16 26 H 0.10 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.09 0.94 8.10 -51.93 -0.42 0.51 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.38 1.84 9.12 45.56 0.42 2.25 16 31 H 0.09 0.99 7.90 -51.93 -0.41 0.58 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 285.58 15.07 4.30 4.30 Total: -1.00 -32.16 285.58 -5.08 -37.24 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: -3.07 Total: 15.86 kcal Atomic # 6 Polarization: 12.14 SS G_CDS: -1.31 Total: 10.83 kcal Atomic # 7 Polarization: -49.04 SS G_CDS: 0.32 Total: -48.71 kcal Atomic # 8 Polarization: -34.30 SS G_CDS: -0.31 Total: -34.61 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -32.16 -5.08 -37.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091525353.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.254 kcal (2) G-P(sol) polarization free energy of solvation -32.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds