Wall clock time and date at job start Mon Mar 30 2020 03:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31014 * 1 3 3 Si 1.86802 * 120.00062 * 2 1 4 4 H 1.48498 * 109.47434 * 240.00122 * 3 2 1 5 5 H 1.48502 * 109.47040 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47201 * 119.99859 * 3 2 1 7 7 C 1.39589 * 119.99992 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99677 * 180.02562 * 7 2 1 9 9 N 1.36116 * 120.00149 * 359.97438 * 7 2 1 10 10 C 1.34772 * 119.99900 * 179.97438 * 9 7 2 11 11 O 1.21499 * 120.00162 * 0.02562 * 10 9 7 12 12 C 1.48835 * 119.99836 * 180.02562 * 10 9 7 13 13 O 1.21442 * 119.99904 * 359.97438 * 12 10 9 14 14 N 1.34773 * 120.00219 * 180.02562 * 12 10 9 15 15 C 1.46493 * 120.00383 * 179.97438 * 14 12 10 16 16 C 1.53006 * 109.47570 * 179.97438 * 15 14 12 17 17 C 1.53778 * 113.61543 * 185.00314 * 16 15 14 18 18 C 1.53780 * 87.07576 * 220.01830 * 17 16 15 19 19 O 1.42903 * 113.61428 * 139.98514 * 18 17 16 20 20 C 1.53776 * 87.17872 * 25.39099 * 18 17 16 21 21 H 0.96996 * 119.99780 * 359.97438 * 1 2 3 22 22 H 0.97001 * 120.00095 * 0.02562 * 9 7 2 23 23 H 0.97001 * 119.99622 * 359.97438 * 14 12 10 24 24 H 1.08998 * 109.46875 * 59.99875 * 15 14 12 25 25 H 1.09003 * 109.47535 * 299.99825 * 15 14 12 26 26 H 1.09004 * 112.84350 * 316.19907 * 16 15 14 27 27 H 1.09004 * 113.61269 * 105.47250 * 17 16 15 28 28 H 1.09002 * 113.61517 * 334.56337 * 17 16 15 29 29 H 1.09004 * 113.61517 * 270.79752 * 18 17 16 30 30 H 0.96700 * 114.00311 * 181.52832 * 19 18 17 31 31 H 1.08999 * 113.61283 * 89.15127 * 20 18 17 32 32 H 1.08998 * 113.61479 * 220.06276 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2442 1.6177 0.0000 4 1 3.0979 1.6965 -1.2125 5 1 1.2792 2.7465 0.0006 6 1 3.0979 1.6964 1.2125 7 6 2.0081 -1.2089 -0.0005 8 1 3.0881 -1.2088 -0.0001 9 7 1.3275 -2.3877 -0.0005 10 6 2.0014 -3.5548 -0.0016 11 8 3.2164 -3.5548 -0.0021 12 6 1.2573 -4.8438 -0.0022 13 8 0.0429 -4.8438 -0.0012 14 7 1.9311 -6.0110 -0.0027 15 6 1.1987 -7.2797 -0.0027 16 6 2.1929 -8.4427 -0.0040 17 6 1.5262 -9.8229 -0.1270 18 6 2.5526 -10.3231 0.9032 19 8 2.0047 -11.2274 1.8646 20 6 2.6435 -8.8721 1.4042 21 1 -0.4849 0.8400 0.0004 22 1 0.3575 -2.3877 -0.0005 23 1 2.9011 -6.0109 -0.0031 24 1 0.5717 -7.3372 -0.8924 25 1 0.5724 -7.3377 0.8875 26 1 3.0185 -8.2929 -0.6998 27 1 1.6395 -10.2763 -1.1117 28 1 0.4982 -9.8451 0.2348 29 1 3.4769 -10.6894 0.4563 30 1 2.6399 -11.5273 2.5292 31 1 1.9214 -8.6338 2.1851 32 1 3.6573 -8.5590 1.6536 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091525353.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:03 Heat of formation + Delta-G solvation = -135.804998 kcal Electronic energy + Delta-G solvation = -16808.403167 eV Core-core repulsion = 13768.315294 eV Total energy + Delta-G solvation = -3040.087872 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.36782 -40.29236 -39.05222 -36.73442 -36.22462 -34.91171 -33.43951 -29.40347 -27.62019 -26.67763 -24.76478 -23.01924 -21.40272 -20.54374 -20.19565 -18.96610 -18.18835 -17.64940 -16.85926 -16.76916 -16.28453 -16.14322 -15.72837 -15.33173 -15.05195 -14.55756 -14.35329 -13.66868 -13.47835 -13.39849 -12.95772 -12.66155 -12.58822 -12.46640 -12.20098 -12.11741 -11.82446 -11.65676 -11.25700 -10.71430 -10.28690 -10.23887 -10.19219 -8.66206 -6.11472 0.59727 1.41196 1.49519 1.54281 1.82340 2.29544 2.37037 3.15109 3.23446 3.33121 3.56835 3.64308 3.84013 3.99629 4.04273 4.25854 4.37704 4.64295 4.80529 4.83838 4.85817 5.04035 5.16083 5.24543 5.30377 5.47667 5.67374 6.15827 6.38931 6.81081 6.94191 7.01802 7.27389 7.79163 8.49456 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.066917 B = 0.003930 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.327074 B = 7122.080964 C = 7339.842360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C -0.005 4.005 3 Si 1.011 2.989 4 H -0.263 1.263 5 H -0.267 1.267 6 H -0.263 1.263 7 C -0.347 4.347 8 H 0.100 0.900 9 N -0.511 5.511 10 C 0.389 3.611 11 O -0.616 6.616 12 C 0.516 3.484 13 O -0.569 6.569 14 N -0.690 5.690 15 C 0.129 3.871 16 C -0.116 4.116 17 C -0.120 4.120 18 C 0.082 3.918 19 O -0.581 6.581 20 C -0.167 4.167 21 H 0.289 0.711 22 H 0.400 0.600 23 H 0.417 0.583 24 H 0.069 0.931 25 H 0.061 0.939 26 H 0.117 0.883 27 H 0.093 0.907 28 H 0.082 0.918 29 H 0.106 0.894 30 H 0.395 0.605 31 H 0.076 0.924 32 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.147 -16.615 0.953 17.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.209 4.209 3 Si 0.832 3.168 4 H -0.188 1.188 5 H -0.191 1.191 6 H -0.188 1.188 7 C -0.477 4.477 8 H 0.118 0.882 9 N -0.145 5.145 10 C 0.174 3.826 11 O -0.506 6.506 12 C 0.299 3.701 13 O -0.449 6.449 14 N -0.343 5.343 15 C 0.007 3.993 16 C -0.135 4.135 17 C -0.158 4.158 18 C 0.024 3.976 19 O -0.390 6.390 20 C -0.205 4.205 21 H 0.099 0.901 22 H 0.235 0.765 23 H 0.254 0.746 24 H 0.087 0.913 25 H 0.080 0.920 26 H 0.135 0.865 27 H 0.111 0.889 28 H 0.100 0.900 29 H 0.124 0.876 30 H 0.245 0.755 31 H 0.095 0.905 32 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.356 -16.418 0.607 16.997 hybrid contribution 0.432 0.792 0.383 0.980 sum 4.788 -15.626 0.990 16.373 Atomic orbital electron populations 1.69548 1.07881 1.30917 1.45055 1.26568 0.96505 1.03544 0.94313 0.84736 0.77729 0.74666 0.79687 1.18766 1.19146 1.18803 1.19971 0.93749 0.83078 1.50906 0.88208 1.41659 1.10236 1.04833 1.57722 1.19615 0.87884 0.85235 0.89879 1.90537 1.13728 1.87287 1.59069 1.20109 0.87002 0.86085 0.76898 1.90682 1.14716 1.88374 1.51134 1.45620 1.11536 1.04386 1.72765 1.21528 0.94794 0.80920 1.02084 1.22603 0.98843 0.92758 0.99307 1.23047 0.99438 0.93424 0.99850 1.23372 0.97194 0.87138 0.89945 1.86482 1.42781 1.65298 1.44396 1.23817 1.02636 0.97656 0.96397 0.90069 0.76513 0.74593 0.91321 0.92030 0.86467 0.88877 0.89986 0.87613 0.75519 0.90522 0.90014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.49 13.03 21.77 0.28 -48.20 16 2 C -0.01 -0.26 5.51 85.14 0.47 0.21 16 3 Si 1.01 40.72 29.56 68.60 2.03 42.75 16 4 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 5 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 6 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 7 C -0.35 -19.63 9.67 84.35 0.82 -18.82 16 8 H 0.10 5.75 7.15 -2.91 -0.02 5.73 16 9 N -0.51 -28.31 5.25 -308.88 -1.62 -29.93 16 10 C 0.39 20.09 7.82 87.08 0.68 20.77 16 11 O -0.62 -33.42 16.03 -3.71 -0.06 -33.48 16 12 C 0.52 22.78 7.87 87.08 0.69 23.47 16 13 O -0.57 -27.43 16.47 -3.53 -0.06 -27.48 16 14 N -0.69 -22.96 5.55 -465.01 -2.58 -25.54 16 15 C 0.13 3.39 5.51 86.38 0.48 3.87 16 16 C -0.12 -2.09 3.75 -10.21 -0.04 -2.13 16 17 C -0.12 -1.92 7.48 31.12 0.23 -1.68 16 18 C 0.08 1.18 5.21 31.12 0.16 1.34 16 19 O -0.58 -9.45 13.67 -148.98 -2.04 -11.48 16 20 C -0.17 -2.84 7.48 31.18 0.23 -2.61 16 21 H 0.29 14.33 8.30 -92.71 -0.77 13.56 16 22 H 0.40 22.49 7.35 -92.71 -0.68 21.81 16 23 H 0.42 12.74 7.93 -92.71 -0.74 12.00 16 24 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.06 1.74 7.85 -2.39 -0.02 1.72 16 26 H 0.12 1.78 8.14 -2.38 -0.02 1.76 16 27 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.08 1.53 8.10 -2.39 -0.02 1.51 16 29 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.39 2.97 9.12 -74.06 -0.68 2.29 16 31 H 0.08 1.56 7.90 -2.39 -0.02 1.54 16 32 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -69.16 285.58 -1.24 -70.40 By element: Atomic # 1 Polarization: 39.47 SS G_CDS: -0.92 Total: 38.55 kcal Atomic # 6 Polarization: 20.70 SS G_CDS: 3.72 Total: 24.42 kcal Atomic # 7 Polarization: -99.76 SS G_CDS: -3.92 Total: -103.67 kcal Atomic # 8 Polarization: -70.29 SS G_CDS: -2.15 Total: -72.45 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 2.03 Total: 42.75 kcal Total: -69.16 -1.24 -70.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091525353.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.405 kcal (2) G-P(sol) polarization free energy of solvation -69.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds