Wall clock time and date at job start Mon Mar 30 2020 03:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31018 * 1 3 3 Si 1.86798 * 119.99889 * 2 1 4 4 H 1.48505 * 109.47357 * 239.99988 * 3 2 1 5 5 H 1.48500 * 109.47342 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47291 * 120.00401 * 3 2 1 7 7 C 1.39583 * 119.99984 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99958 * 179.97438 * 7 2 1 9 9 N 1.36123 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.34773 * 119.99651 * 180.02562 * 9 7 2 11 11 O 1.21498 * 120.00451 * 359.97438 * 10 9 7 12 12 C 1.48832 * 119.99309 * 179.97438 * 10 9 7 13 13 O 1.21439 * 120.00728 * 359.97438 * 12 10 9 14 14 N 1.34779 * 119.99631 * 179.97438 * 12 10 9 15 15 C 1.46502 * 120.00276 * 179.97438 * 14 12 10 16 16 C 1.52998 * 109.47410 * 185.01177 * 15 14 12 17 17 C 1.52997 * 115.54752 * 65.20141 * 16 15 14 18 18 O 1.42901 * 109.47194 * 65.13930 * 17 16 15 19 19 C 1.53005 * 117.49697 * 210.87000 * 16 15 14 20 20 C 1.52999 * 117.49679 * 279.52713 * 16 15 14 21 21 H 0.97001 * 119.99957 * 359.97438 * 1 2 3 22 22 H 0.96996 * 119.99488 * 359.97438 * 9 7 2 23 23 H 0.97000 * 120.00671 * 0.02562 * 14 12 10 24 24 H 1.09003 * 109.46717 * 65.00782 * 15 14 12 25 25 H 1.09002 * 109.47013 * 305.01707 * 15 14 12 26 26 H 1.08998 * 109.47144 * 305.13429 * 17 16 15 27 27 H 1.09000 * 109.47116 * 185.13588 * 17 16 15 28 28 H 0.96702 * 113.99436 * 179.97438 * 18 17 16 29 29 H 1.09007 * 117.49579 * 215.00537 * 19 16 15 30 30 H 1.08996 * 117.49651 * 0.02562 * 19 16 15 31 31 H 1.08992 * 117.50149 * 359.97438 * 20 16 15 32 32 H 1.09001 * 117.49224 * 144.97681 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2441 1.6177 0.0000 4 1 3.0979 1.6965 -1.2125 5 1 1.2792 2.7465 0.0006 6 1 3.0980 1.6964 1.2124 7 6 2.0081 -1.2088 -0.0005 8 1 3.0881 -1.2088 -0.0010 9 7 1.3275 -2.3877 -0.0005 10 6 2.0014 -3.5548 -0.0005 11 8 3.2164 -3.5548 -0.0010 12 6 1.2572 -4.8437 0.0000 13 8 0.0428 -4.8438 0.0010 14 7 1.9311 -6.0109 -0.0005 15 6 1.1987 -7.2797 0.0006 16 6 2.1883 -8.4398 0.1258 17 6 2.9611 -8.5085 1.4444 18 8 2.0520 -8.7654 2.5166 19 6 1.8129 -9.7638 -0.5430 20 6 2.9154 -8.8881 -1.1436 21 1 -0.4850 0.8401 0.0004 22 1 0.3575 -2.3876 0.0002 23 1 2.9011 -6.0110 -0.0009 24 1 0.6399 -7.3774 -0.9302 25 1 0.5073 -7.2993 0.8431 26 1 3.4688 -7.5597 1.6178 27 1 3.6976 -9.3104 1.3926 28 1 2.4739 -8.8223 3.3848 29 1 2.1166 -10.6838 -0.0434 30 1 0.8611 -9.8081 -1.0723 31 1 2.6884 -8.3568 -2.0678 32 1 3.9446 -9.2316 -1.0392 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122447816.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:40 Heat of formation + Delta-G solvation = -128.371158 kcal Electronic energy + Delta-G solvation = -17097.999857 eV Core-core repulsion = 14058.234340 eV Total energy + Delta-G solvation = -3039.765517 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.36752 -39.81619 -38.89168 -36.81055 -36.40150 -35.07607 -33.44032 -29.14210 -27.84680 -27.13379 -24.33389 -23.29140 -21.26237 -20.59437 -20.16705 -18.71631 -18.25473 -17.64774 -16.97717 -16.75160 -16.59133 -15.89119 -15.78306 -15.55254 -14.80602 -14.66115 -14.45816 -13.86730 -13.67090 -13.59254 -12.95751 -12.59849 -12.40510 -12.38488 -12.13721 -12.11576 -11.65863 -11.41340 -11.17204 -10.79053 -10.29123 -10.23981 -10.21050 -8.66168 -6.11544 0.58816 1.41106 1.49627 1.54214 1.77024 2.28270 2.36415 2.70039 3.14949 3.29732 3.39884 3.61343 3.73793 3.94058 4.02222 4.21101 4.50630 4.55167 4.71717 4.79408 4.81514 5.01091 5.03357 5.23717 5.24451 5.27902 5.66978 6.14934 6.38036 6.80126 6.89884 7.00489 7.26669 7.78538 8.49502 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.046999 B = 0.004590 C = 0.004532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.612026 B = 6098.760825 C = 6177.228625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C -0.005 4.005 3 Si 1.012 2.988 4 H -0.263 1.263 5 H -0.267 1.267 6 H -0.263 1.263 7 C -0.347 4.347 8 H 0.100 0.900 9 N -0.510 5.510 10 C 0.390 3.610 11 O -0.616 6.616 12 C 0.516 3.484 13 O -0.570 6.570 14 N -0.687 5.687 15 C 0.162 3.838 16 C -0.166 4.166 17 C 0.113 3.887 18 O -0.589 6.589 19 C -0.142 4.142 20 C -0.152 4.152 21 H 0.289 0.711 22 H 0.400 0.600 23 H 0.415 0.585 24 H 0.067 0.933 25 H 0.060 0.940 26 H 0.043 0.957 27 H 0.076 0.924 28 H 0.396 0.604 29 H 0.115 0.885 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.533 -15.824 0.690 16.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.209 4.209 3 Si 0.832 3.168 4 H -0.188 1.188 5 H -0.191 1.191 6 H -0.188 1.188 7 C -0.476 4.476 8 H 0.118 0.882 9 N -0.144 5.144 10 C 0.175 3.825 11 O -0.506 6.506 12 C 0.299 3.701 13 O -0.449 6.449 14 N -0.340 5.340 15 C 0.039 3.961 16 C -0.166 4.166 17 C 0.035 3.965 18 O -0.397 6.397 19 C -0.179 4.179 20 C -0.188 4.188 21 H 0.099 0.901 22 H 0.235 0.765 23 H 0.252 0.748 24 H 0.085 0.915 25 H 0.079 0.921 26 H 0.062 0.938 27 H 0.094 0.906 28 H 0.246 0.754 29 H 0.133 0.867 30 H 0.119 0.881 31 H 0.117 0.883 32 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 4.847 -15.707 0.207 16.439 hybrid contribution 0.328 0.855 0.515 1.051 sum 5.175 -14.851 0.722 15.744 Atomic orbital electron populations 1.69553 1.07902 1.30930 1.44992 1.26572 0.96496 1.03543 0.94272 0.84729 0.77721 0.74632 0.79683 1.18762 1.19120 1.18804 1.19972 0.93746 0.83027 1.50895 0.88189 1.41663 1.10241 1.04829 1.57667 1.19548 0.87852 0.85135 0.89975 1.90533 1.13680 1.87253 1.59117 1.20136 0.87014 0.86033 0.76889 1.90678 1.14733 1.88354 1.51162 1.45564 1.11403 1.04261 1.72735 1.20837 0.93536 0.80147 1.01592 1.21542 1.03357 0.96833 0.94916 1.21627 0.90227 0.99983 0.84641 1.86450 1.38691 1.95141 1.19454 1.23077 1.00236 0.92935 1.01701 1.23193 0.98793 1.02280 0.94583 0.90058 0.76521 0.74806 0.91470 0.92145 0.93833 0.90603 0.75427 0.86681 0.88144 0.88303 0.86237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.65 13.03 21.76 0.28 -48.37 16 2 C 0.00 -0.24 5.51 85.14 0.47 0.23 16 3 Si 1.01 40.82 29.56 68.60 2.03 42.85 16 4 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 5 H -0.27 -10.09 7.11 99.48 0.71 -9.39 16 6 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 7 C -0.35 -19.68 9.67 84.35 0.82 -18.87 16 8 H 0.10 5.78 7.15 -2.91 -0.02 5.76 16 9 N -0.51 -28.56 5.25 -308.88 -1.62 -30.18 16 10 C 0.39 20.44 7.81 87.08 0.68 21.12 16 11 O -0.62 -33.77 16.03 -3.71 -0.06 -33.83 16 12 C 0.52 23.50 7.87 87.08 0.69 24.19 16 13 O -0.57 -28.24 16.46 -3.53 -0.06 -28.30 16 14 N -0.69 -24.29 5.40 -464.99 -2.51 -26.80 16 15 C 0.16 4.77 5.46 86.38 0.47 5.24 16 16 C -0.17 -3.52 1.80 -52.18 -0.09 -3.61 16 17 C 0.11 2.18 6.80 71.98 0.49 2.67 16 18 O -0.59 -12.59 13.57 -148.98 -2.02 -14.61 16 19 C -0.14 -2.30 9.94 30.62 0.30 -2.00 16 20 C -0.15 -2.46 9.94 30.62 0.30 -2.15 16 21 H 0.29 14.38 8.30 -92.71 -0.77 13.61 16 22 H 0.40 22.72 7.35 -92.71 -0.68 22.04 16 23 H 0.42 13.65 7.60 -92.71 -0.70 12.95 16 24 H 0.07 1.95 8.09 -2.39 -0.02 1.94 16 25 H 0.06 2.03 8.10 -2.39 -0.02 2.01 16 26 H 0.04 0.92 7.74 -2.39 -0.02 0.90 16 27 H 0.08 1.03 8.09 -2.39 -0.02 1.01 16 28 H 0.40 4.88 9.12 -74.06 -0.68 4.21 16 29 H 0.11 1.51 8.14 -2.38 -0.02 1.49 16 30 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -69.71 289.55 -0.72 -70.42 By element: Atomic # 1 Polarization: 42.88 SS G_CDS: -0.89 Total: 42.00 kcal Atomic # 6 Polarization: 22.70 SS G_CDS: 4.13 Total: 26.82 kcal Atomic # 7 Polarization: -101.50 SS G_CDS: -3.85 Total: -105.35 kcal Atomic # 8 Polarization: -74.60 SS G_CDS: -2.14 Total: -76.74 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 2.03 Total: 42.85 kcal Total: -69.71 -0.72 -70.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122447816.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.947 kcal (2) G-P(sol) polarization free energy of solvation -69.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds